BLASTX nr result

ID: Ophiopogon25_contig00023561 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00023561
         (782 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONK74792.1| uncharacterized protein A4U43_C03F10190 [Asparagu...    66   2e-08
ref|XP_020258376.1| rRNA biogenesis protein RRP5 [Asparagus offi...    66   2e-08

>gb|ONK74792.1| uncharacterized protein A4U43_C03F10190 [Asparagus officinalis]
          Length = 930

 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 52/128 (40%), Positives = 55/128 (42%)
 Frame = +1

Query: 397 MVAHGEKTKRKSLNLNPNKSLAPKSXXXXXXXXXXXXXXXXXXYINPLPTSLLVQDDDPE 576
           M AHGEK K+KS   NPN  LAPKS                    + L TSLLVQDDDPE
Sbjct: 1   MAAHGEK-KKKSQKQNPNH-LAPKSQKPFKRSKKEKIPKEPAS-TDSLSTSLLVQDDDPE 57

Query: 577 FPRGGGSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSANERDDELGSL 756
           FPRGGGS L                                        A   DDELGSL
Sbjct: 58  FPRGGGSVL-SRKEEAEARAEAEAEFEKEKKEFRKGKDRRKKKNERKKPAKGADDELGSL 116

Query: 757 FGDGVTGR 780
           FG+GVTGR
Sbjct: 117 FGEGVTGR 124


>ref|XP_020258376.1| rRNA biogenesis protein RRP5 [Asparagus officinalis]
          Length = 1915

 Score = 65.9 bits (159), Expect = 2e-08
 Identities = 52/128 (40%), Positives = 55/128 (42%)
 Frame = +1

Query: 397 MVAHGEKTKRKSLNLNPNKSLAPKSXXXXXXXXXXXXXXXXXXYINPLPTSLLVQDDDPE 576
           M AHGEK K+KS   NPN  LAPKS                    + L TSLLVQDDDPE
Sbjct: 1   MAAHGEK-KKKSQKQNPNH-LAPKSQKPFKRSKKEKIPKEPAS-TDSLSTSLLVQDDDPE 57

Query: 577 FPRGGGSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSANERDDELGSL 756
           FPRGGGS L                                        A   DDELGSL
Sbjct: 58  FPRGGGSVL-SRKEEAEARAEAEAEFEKEKKEFRKGKDRRKKKNERKKPAKGADDELGSL 116

Query: 757 FGDGVTGR 780
           FG+GVTGR
Sbjct: 117 FGEGVTGR 124


Top