BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00022943
         (609 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD93802.1| RNA polymerase beta chain, partial (chloroplast) ...   355   e-115
gb|AEX94833.1| RNA polymerase beta' subunit (chloroplast) [Ophio...   355   e-111
gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sanse...   355   e-111
gb|AEX94832.1| RNA polymerase beta' subunit (chloroplast) [Lirio...   355   e-111
gb|AEX94830.1| RNA polymerase beta' subunit (chloroplast) [Dasyl...   355   e-111
gb|AEX94829.1| RNA polymerase beta' subunit (chloroplast) [Beauc...   355   e-111
ref|YP_009432293.1| RNA polymerase beta' subunit (chloroplast) [...   353   e-110
gb|ABD93797.1| RNA polymerase beta chain, partial (chloroplast) ...   342   e-110
gb|AEX94813.1| RNA polymerase beta' subunit (chloroplast) [Scado...   351   e-109
gb|AEX94811.1| RNA polymerase beta' subunit (chloroplast) [Crinu...   351   e-109
ref|YP_009431208.1| RNA polymerase beta' subunit (chloroplast) [...   350   e-109
gb|ABD93844.1| RNA polymerase beta chain, partial (chloroplast) ...   338   e-109
gb|AEX94834.1| RNA polymerase beta' subunit (chloroplast) [Ruscu...   349   e-109
ref|YP_009180098.1| RNA polymerase beta' subunit (chloroplast) [...   348   e-108
ref|YP_009183189.1| RNA polymerase beta' subunit (chloroplast) [...   348   e-108
gb|AEX94836.1| RNA polymerase beta' subunit (chloroplast) [Maian...   347   e-108
ref|YP_009334480.1| RNA polymerase beta subunit (chloroplast) [A...   347   e-108
gb|ABD93778.1| RNA polymerase beta chain, partial (chloroplast) ...   337   e-108
ref|YP_009335323.1| RNA polymerase beta subunit (chloroplast) [N...   345   e-107
ref|YP_009431294.1| RNA polymerase beta' subunit (chloroplast) [...   345   e-107

>gb|ABD93802.1| RNA polymerase beta chain, partial (chloroplast) [Beaucarnea
           recurvata]
          Length = 830

 Score =  355 bits (912), Expect = e-115
 Identities = 181/196 (92%), Positives = 181/196 (92%)
 Frame = +2

Query: 2   EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
           EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 173 EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 232

Query: 182 GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
           GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 233 GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTGKKNSKESKTKSKNWIYV 292

Query: 362 QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
           QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 293 QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 352

Query: 542 GIYHTSIQLVRTCLVL 589
           GIYHTSIQLVRTCLVL
Sbjct: 353 GIYHTSIQLVRTCLVL 368


>gb|AEX94833.1| RNA polymerase beta' subunit (chloroplast) [Ophiopogon japonicus]
          Length = 1381

 Score =  355 bits (912), Expect = e-111
 Identities = 181/196 (92%), Positives = 181/196 (92%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 644  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 703

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 704  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNPKESKTKSKNWIYV 763

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 764  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 823

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 824  GIYHTSIQLVRTCLVL 839


>gb|AEX94835.1| RNA polymerase beta' subunit (chloroplast) [Sansevieria trifasciata]
          Length = 1384

 Score =  355 bits (912), Expect = e-111
 Identities = 181/196 (92%), Positives = 181/196 (92%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 645  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 704

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 705  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYV 764

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 765  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 824

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 825  GIYHTSIQLVRTCLVL 840


>gb|AEX94832.1| RNA polymerase beta' subunit (chloroplast) [Liriope spicata]
          Length = 1385

 Score =  355 bits (912), Expect = e-111
 Identities = 181/196 (92%), Positives = 181/196 (92%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 648  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 707

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 708  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYV 767

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 768  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 827

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 828  GIYHTSIQLVRTCLVL 843


>gb|AEX94830.1| RNA polymerase beta' subunit (chloroplast) [Dasylirion wheeleri]
          Length = 1385

 Score =  355 bits (912), Expect = e-111
 Identities = 181/196 (92%), Positives = 181/196 (92%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 648  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 707

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 708  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYV 767

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 768  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 827

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 828  GIYHTSIQLVRTCLVL 843


>gb|AEX94829.1| RNA polymerase beta' subunit (chloroplast) [Beaucarnea hookeri]
          Length = 1385

 Score =  355 bits (912), Expect = e-111
 Identities = 181/196 (92%), Positives = 181/196 (92%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 648  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 707

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 708  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYV 767

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 768  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 827

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 828  GIYHTSIQLVRTCLVL 843


>ref|YP_009432293.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum stenophyllum]
 gb|ATB18548.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum stenophyllum]
          Length = 1381

 Score =  353 bits (906), Expect = e-110
 Identities = 180/196 (91%), Positives = 180/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKE SPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 644  EYRGAKELSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 703

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 704  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNWIYV 763

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 764  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 823

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 824  GIYHTSIQLVRTCLVL 839


>gb|ABD93797.1| RNA polymerase beta chain, partial (chloroplast) [Lomandra obliqua]
          Length = 862

 Score =  342 bits (878), Expect = e-110
 Identities = 174/196 (88%), Positives = 176/196 (89%)
 Frame = +2

Query: 2   EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
           EYRG KEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGV+TQLALNTNTRS VG
Sbjct: 200 EYRGTKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVNTQLALNTNTRSLVG 259

Query: 182 GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
           GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGIL+PPG               WIYV
Sbjct: 260 GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILVPPGTEKKNSKKSKTKLKNWIYV 319

Query: 362 QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
           QRITP KKKYFVLVRPVVTYEIADGINL KLF QDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 320 QRITPTKKKYFVLVRPVVTYEIADGINLTKLFSQDLLQEKENVQLRVVNYILYGNGKSIR 379

Query: 542 GIYHTSIQLVRTCLVL 589
           GIYHTSIQLVRTCLVL
Sbjct: 380 GIYHTSIQLVRTCLVL 395


>gb|AEX94813.1| RNA polymerase beta' subunit (chloroplast) [Scadoxus cinnabarinus]
          Length = 1373

 Score =  351 bits (901), Expect = e-109
 Identities = 178/196 (90%), Positives = 180/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 642  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 701

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 702  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTKNKNSKESTKKLKNWIYV 761

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITP KKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENV+L+VVNYILYGNGKSIR
Sbjct: 762  QRITPTKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVELKVVNYILYGNGKSIR 821

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 822  GIYHTSIQLVRTCLVL 837


>gb|AEX94811.1| RNA polymerase beta' subunit (chloroplast) [Crinum asiaticum]
          Length = 1387

 Score =  351 bits (901), Expect = e-109
 Identities = 178/196 (90%), Positives = 180/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 646  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 705

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 706  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKKKWKNWIYV 765

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITP KKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEK+NV+LRVVNYILYGNGKSIR
Sbjct: 766  QRITPTKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKDNVELRVVNYILYGNGKSIR 825

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 826  GIYHTSIQLVRTCLVL 841


>ref|YP_009431208.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum bicolor]
 gb|ASW26644.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum bicolor]
          Length = 1381

 Score =  350 bits (899), Expect = e-109
 Identities = 180/196 (91%), Positives = 180/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 644  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 703

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG                IYV
Sbjct: 704  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYV 763

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 764  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 823

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 824  GIYHTSIQLVRTCLVL 839


>gb|ABD93844.1| RNA polymerase beta chain, partial (chloroplast) [Agave attenuata]
          Length = 761

 Score =  338 bits (867), Expect = e-109
 Identities = 176/196 (89%), Positives = 177/196 (90%)
 Frame = +2

Query: 2   EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
           EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 107 EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 166

Query: 182 GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
           GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG                IYV
Sbjct: 167 GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKTNSKESKKLKNG-IYV 225

Query: 362 QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
           QRITP KKKYFVLVRPVVTYEIADGINL KLFPQDLLQEK+NVQLRVVNYILYGNGKSIR
Sbjct: 226 QRITPTKKKYFVLVRPVVTYEIADGINLEKLFPQDLLQEKDNVQLRVVNYILYGNGKSIR 285

Query: 542 GIYHTSIQLVRTCLVL 589
           GI HTSIQLVRTCLVL
Sbjct: 286 GISHTSIQLVRTCLVL 301


>gb|AEX94834.1| RNA polymerase beta' subunit (chloroplast) [Ruscus aculeatus]
          Length = 1387

 Score =  349 bits (896), Expect = e-109
 Identities = 179/196 (91%), Positives = 180/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 648  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 707

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKS+ELKIFSGDIHFPGETDKISRHSGILIPPG                IYV
Sbjct: 708  GLVRVERKKKSMELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYV 767

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 768  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 827

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 828  GIYHTSIQLVRTCLVL 843


>ref|YP_009180098.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum cyrtonema]
 gb|ALL96465.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum cyrtonema]
          Length = 1359

 Score =  348 bits (893), Expect = e-108
 Identities = 179/196 (91%), Positives = 179/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKE SPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 642  EYRGAKELSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 701

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG                IYV
Sbjct: 702  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYV 761

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 762  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 821

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 822  GIYHTSIQLVRTCLVL 837


>ref|YP_009183189.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum
            verticillatum]
 ref|YP_009236350.1| DNA-directed RNA polymerase beta'' chain (chloroplast) [Polygonatum
            sibiricum]
 gb|ALM87707.1| RNA polymerase beta' subunit (chloroplast) [Polygonatum
            verticillatum]
 gb|AMF84063.1| DNA-directed RNA polymerase beta'' chain (chloroplast) [Polygonatum
            sibiricum]
          Length = 1382

 Score =  348 bits (893), Expect = e-108
 Identities = 179/196 (91%), Positives = 179/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKE SPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 645  EYRGAKELSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 704

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG                IYV
Sbjct: 705  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYV 764

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 765  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 824

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 825  GIYHTSIQLVRTCLVL 840


>gb|AEX94836.1| RNA polymerase beta' subunit (chloroplast) [Maianthemum stellatum]
          Length = 1385

 Score =  347 bits (891), Expect = e-108
 Identities = 179/196 (91%), Positives = 179/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 648  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 707

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG                IYV
Sbjct: 708  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKKKSKNGIYV 767

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLF QDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 768  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFSQDLLQEKENVQLRVVNYILYGNGKSIR 827

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHTSIQLVRTCLVL
Sbjct: 828  GIYHTSIQLVRTCLVL 843


>ref|YP_009334480.1| RNA polymerase beta subunit (chloroplast) [Anemarrhena asphodeloides]
 gb|AEX94801.1| RNA polymerase beta' subunit (chloroplast) [Anemarrhena
            asphodeloides]
 gb|APO11290.1| RNA polymerase beta subunit (chloroplast) [Anemarrhena asphodeloides]
          Length = 1384

 Score =  347 bits (890), Expect = e-108
 Identities = 178/196 (90%), Positives = 180/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 646  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 705

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 706  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG-TEKKNSKESKKLKNWIYV 764

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITP KKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIR
Sbjct: 765  QRITPTKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIR 824

Query: 542  GIYHTSIQLVRTCLVL 589
            GIYHT+IQLVRTCLVL
Sbjct: 825  GIYHTNIQLVRTCLVL 840


>gb|ABD93778.1| RNA polymerase beta chain, partial (chloroplast) [Asparagus
           officinalis]
          Length = 860

 Score =  337 bits (865), Expect = e-108
 Identities = 174/198 (87%), Positives = 178/198 (89%), Gaps = 2/198 (1%)
 Frame = +2

Query: 2   EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
           EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSS IMVRNNSIIGVDTQLALNTNT+SRVG
Sbjct: 194 EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSFIMVRNNSIIGVDTQLALNTNTKSRVG 253

Query: 182 GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG--XXXXXXXXXXXXXXXWI 355
           GLVRVERKKKSIELKIFSGDIHFPG+TDKISR SGILIPPG                 WI
Sbjct: 254 GLVRVERKKKSIELKIFSGDIHFPGKTDKISRPSGILIPPGTEKGKKNFKGSKKKLKNWI 313

Query: 356 YVQRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKS 535
           YVQRITP KKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKS
Sbjct: 314 YVQRITPTKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKS 373

Query: 536 IRGIYHTSIQLVRTCLVL 589
           IRGIYHT+IQLVRTCLVL
Sbjct: 374 IRGIYHTNIQLVRTCLVL 391


>ref|YP_009335323.1| RNA polymerase beta subunit (chloroplast) [Nolina atopocarpa]
 gb|AEZ49490.1| RNA polymerase beta'' subunit, partial (plastid) [Nolina atopocarpa]
 gb|APO12381.1| RNA polymerase beta subunit (chloroplast) [Nolina atopocarpa]
          Length = 1385

 Score =  345 bits (885), Expect = e-107
 Identities = 178/196 (90%), Positives = 178/196 (90%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKE SPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG
Sbjct: 648  EYRGAKELSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 707

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG                IYV
Sbjct: 708  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGTEKKNSKESKTKSKNGIYV 767

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR
Sbjct: 768  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 827

Query: 542  GIYHTSIQLVRTCLVL 589
             IYHTSIQLVRTCLVL
Sbjct: 828  EIYHTSIQLVRTCLVL 843


>ref|YP_009431294.1| RNA polymerase beta' subunit (chloroplast) [Agapanthus coddii]
 gb|ASW26730.1| RNA polymerase beta' subunit (chloroplast) [Agapanthus coddii]
          Length = 1366

 Score =  345 bits (884), Expect = e-107
 Identities = 177/196 (90%), Positives = 179/196 (91%)
 Frame = +2

Query: 2    EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGVDTQLALNTNTRSRVG 181
            EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIG+DTQLALNTNTRSRVG
Sbjct: 642  EYRGAKEFSPKYQMKVDRFFFIPEEVHILPGSSSIMVRNNSIIGIDTQLALNTNTRSRVG 701

Query: 182  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPGXXXXXXXXXXXXXXXWIYV 361
            GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG               WIYV
Sbjct: 702  GLVRVERKKKSIELKIFSGDIHFPGETDKISRHSGILIPPG-AEKKNYKESKKLKNWIYV 760

Query: 362  QRITPIKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKENVQLRVVNYILYGNGKSIR 541
            QRITP KKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEK+NVQLRVVNYILYGNGKSIR
Sbjct: 761  QRITPTKKKYFVLVRPVVTYEIADGINLAKLFPQDLLQEKDNVQLRVVNYILYGNGKSIR 820

Query: 542  GIYHTSIQLVRTCLVL 589
             IYHTSIQLVRTCLVL
Sbjct: 821  RIYHTSIQLVRTCLVL 836