BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00015812
         (3916 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   171   3e-65
emb|CDP17738.1| unnamed protein product [Coffea canephora]            166   4e-65
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   147   1e-62
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo...   154   1e-55
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   155   1e-55
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   155   1e-55
gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygro...   157   9e-55
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   141   7e-54
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   158   1e-53
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   158   1e-52
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo...   142   2e-52
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   147   3e-52
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     140   1e-51
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo...   141   1e-51
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group...   153   2e-51
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          132   3e-50
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]        140   5e-50
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   135   6e-50
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            135   6e-50
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   144   1e-49

>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  171 bits (433), Expect(2) = 3e-65
 Identities = 108/344 (31%), Positives = 184/344 (53%), Gaps = 10/344 (2%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEE--SLNASNGEAFIVRGRGSERQGQENQS*SKSRDRP 351
            G+  +    V +AL + ELR++++  + + ++ EA ++RGR  + Q +E +  SKS+ R 
Sbjct: 106  GKENVSLDAVCSALYSHELRKQDKMRTKSTTSEEALVIRGR-QQSQTKERRGMSKSKGRV 164

Query: 352  GKFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXX 531
                + +++C+ C ++G+ + +C + +   KK+  P  AN+ + + +             
Sbjct: 165  ----VAKDECAFCHEKGHWKKDCPKLQ---KKEKVPQDANVAECKSDVESDISLIVSLSA 217

Query: 532  XXXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYDV-FMRNDSTSQVHGTGTIHIRTHD 708
                     W+ DS  T H+CP++++F    E    V +M ND+  +  G G+I +R HD
Sbjct: 218  SSYPDE---WILDSGCTYHMCPIRDWFFEFQELDGGVVYMGNDNPCKTVGIGSIKLRNHD 274

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYY- 885
            G  R L++VRY+P L+ N+IS+G L  +GL VT+    L+ T G+ +++KGV   NLYY 
Sbjct: 275  GSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGILKATLGALVMLKGVMKNNLYYY 334

Query: 886  ---LVCSTMTEARKPLVED-DHTRLWHWRLGYATMDSLLRLSRRECIE-CATCRQDICEH 1050
                V  T+  A     +D +  +LWH RLG+A   SL  L+++  ++    C+ + CEH
Sbjct: 335  QGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSLQILTKQGLLKGTKACKLEFCEH 394

Query: 1051 FAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEGNTLF 1179
                K + VKF T IH    +LD VH  + GP+K  S+ G   F
Sbjct: 395  CVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSIGGRHYF 438



 Score =  110 bits (274), Expect(2) = 3e-65
 Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1184 FVDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCL 1354
            FVD+ SR + V  MK++N    +F+KWK  VE  TGR++  L +    E   DPF  +C 
Sbjct: 441  FVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGGEYKSDPFLNVCQ 500

Query: 1355 EQGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNR 1534
            + GI R ++ +  K  Q + V+E + + L +KV  M+S++        EA+TYA ++ NR
Sbjct: 501  DCGIVRHFTVR--KTPQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEAVTYAQHLVNR 558

Query: 1535 LPSAAIKGKIPLEISSSKATSDYGSLRVFGCPAHEKT-------GSKEFVFIRIK-GVLG 1690
            LPS+AI GK PLE+ S K  +DY SL VFG  A+           +K+ +F+    GV G
Sbjct: 559  LPSSAIDGKTPLEVWSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKALFMGFSPGVKG 618

Query: 1691 YKLW 1702
            Y+LW
Sbjct: 619  YRLW 622


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  166 bits (421), Expect(2) = 4e-65
 Identities = 109/346 (31%), Positives = 180/346 (52%), Gaps = 12/346 (3%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEESLN--ASNGEAFIVRGRG-SERQGQENQS*SKSRDR 348
            G+  +    V +AL + ELR++++     A+  EA + RGR  S+ +G+   S S SR  
Sbjct: 193  GKENVSLDAVCSALYSRELRKQDKKKKKVAAADEALVARGRQQSQSKGRRGWSKSISR-- 250

Query: 349  PGKFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXX 528
                 + +++C+ C+++G+ + +C +    KKK   P   N+ + + +            
Sbjct: 251  -----VAKDECAFCREKGHWKKDCPK---LKKKGKAPQDVNVAECKSDAESDFSLAVSRL 302

Query: 529  XXXXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYD-VFMRNDSTSQVHGTGTIHIRTH 705
                      W+ DS  T H+ PM+E+F    E     V+M ND+  +  G G+I +R H
Sbjct: 303  TSHPDE----WILDSTCTYHMTPMREWFFEFEELDGGFVYMGNDNPCKTVGIGSIKLRNH 358

Query: 706  DGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYY 885
            DG  R L++VRY+P L+ ++IS+G L  +GL+V +    L+VT G+ +++KGV+  NLYY
Sbjct: 359  DGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVRKNNLYY 418

Query: 886  LVCST------MTEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-CATCRQDIC 1044
               ST      +  +     + + T+LWH RLG A   SL  L+++  ++    C+ + C
Sbjct: 419  YQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKSLQNLAKQGLLKGTKVCKLEFC 478

Query: 1045 EHFAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEGNTLF 1179
            EH   +K + VKF T IH    +LD VH  + GP+K  SL G   F
Sbjct: 479  EHCVLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPSLGGRYYF 524



 Score =  114 bits (285), Expect(2) = 4e-65
 Identities = 71/184 (38%), Positives = 108/184 (58%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1184 FVDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCL 1354
            F+D+ SR + V  MK +++  ++F+KWK  VE QTGR++  L +    E   DPF ++C 
Sbjct: 527  FIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGGEYKSDPFQKICQ 586

Query: 1355 EQGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNR 1534
            E GI R +  +  K  Q + V+E + + L +KV  M+S++G       EA+TYA ++ NR
Sbjct: 587  ECGIVRHFIVR--KIPQQNGVSEHMNKTLVEKVRCMLSNAGLGRKFWAEAVTYAQHLVNR 644

Query: 1535 LPSAAIKGKIPLEISSSKATSDYGSLRVFGCPAHEKTG-------SKEFVFIRIK-GVLG 1690
            LPS+AI GK PLE+ S K  +DY SLR+F   A+           +K+ +F+    GV G
Sbjct: 645  LPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTAYYHVNESKLDPRAKKALFMGFSAGVKG 704

Query: 1691 YKLW 1702
            Y+LW
Sbjct: 705  YRLW 708


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  147 bits (372), Expect(3) = 1e-62
 Identities = 92/291 (31%), Positives = 147/291 (50%), Gaps = 8/291 (2%)
 Frame = +1

Query: 322  QS*SKSRDRPGKFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXX 501
            Q+  K +    K K+G+++C+ C+++G+ + +C + +   + K+    +N+ +   +   
Sbjct: 1    QAKGKKKRSKSKAKVGKDECAFCREKGHWKKDCPKLKNKGQSKTVA-DSNVAEYVDDSDC 59

Query: 502  XXXXXXXXXXXXXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYDV-FMRNDSTSQVHG 678
                               W+ DS  + H+CP +E+F    E    V +  ND     HG
Sbjct: 60   SLAVSGSTSSSSA------WLLDSGCSNHMCPNREWFYDFRELEEGVVYTANDVPLTTHG 113

Query: 679  TGTIHIRTHDGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMK 858
             G+I ++  DG +R L++VR++P L  N+IS+G L  +G  V  E   +++  G+ +VMK
Sbjct: 114  IGSIRLKNRDGAIRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVMK 173

Query: 859  GVQVRN-LYY----LVCSTMTEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-C 1020
            GV+  N LYY     +  T   A     E +  +LWH RLG+A   SL  L ++  ++  
Sbjct: 174  GVRKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKNI 233

Query: 1021 ATCRQDICEHFAWDKK-GVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEGN 1170
              C+ D CEH    KK  VKF T IH    +LD VH  + GPSK ASL GN
Sbjct: 234  QACKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSDVWGPSKTASLAGN 284



 Score =  117 bits (294), Expect(3) = 1e-62
 Identities = 74/184 (40%), Positives = 106/184 (57%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1184 FVDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCL 1354
            FVD+ SR + V  MK +++   +F+KWK+ +E QTGR++    +    E   DPF + C 
Sbjct: 290  FVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGGEYTSDPFKKACE 349

Query: 1355 EQGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNR 1534
            E GI R ++ +     Q + VAE + R L +KV  M+S++G       EA+ YA ++ NR
Sbjct: 350  ESGIVRHFTVKHTP--QQNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLINR 407

Query: 1535 LPSAAIKGKIPLEISSSKATSDYGSLRVFGCPA--HEKTG-----SKEFVFIRI-KGVLG 1690
            LPS+AI GK PLE    K  +DY SL VFGC A  H K       +K+ +F+ I  GV G
Sbjct: 408  LPSSAIGGKTPLEKWFGKPATDYDSLHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKG 467

Query: 1691 YKLW 1702
            Y+LW
Sbjct: 468  YRLW 471



 Score = 28.1 bits (61), Expect(3) = 1e-62
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 1741 ILSRGVVFDEVSMCKRSSSVQEENGQTKMI 1830
            I+SR V FDE +M  + ++ Q++NG  K +
Sbjct: 479  IISRDVTFDESTMLGKVTTEQKKNGTPKQV 508


>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 690

 Score =  154 bits (390), Expect(2) = 1e-55
 Identities = 110/338 (32%), Positives = 172/338 (50%), Gaps = 11/338 (3%)
 Frame = +1

Query: 187  TLGYSEVTAALVNFELRRKEESLNASNGEAFIVRGRGSERQGQENQ-S*SKSRDRPGKFK 363
            TL + +V + L++ E +   +  +   GE   VRGR  E+    N+ S SKSR R     
Sbjct: 171  TLSFEDVKSNLLSKE-KFDLDIHSEDKGEGLSVRGRTQEKGSTSNKKSRSKSRGRKSN-- 227

Query: 364  IGRNQCSLCKKRGNCRHEC---AEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXX 534
                 C  CKK G+   +C    +++E ++K   P +A  ++ + +              
Sbjct: 228  ---KTCRYCKKFGHDISDCFILKKKQERQEKGKNPAEAANVETDSDGDVMISVSSDKRSK 284

Query: 535  XXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYD--VFMRNDSTSQVHGTGTIHIRTHD 708
                    W+ DS  T H+CP K+ FT L E V    V M ND+  ++ G GTI I+THD
Sbjct: 285  TE------WILDSGCTFHMCPYKDLFTTL-EPVDSGVVLMGNDTQCKIAGIGTIQIKTHD 337

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYYL 888
            G ++ L NVR+IP L+ N+IS+GTL   G K + E   L+V++G+ +++K  ++ +LY L
Sbjct: 338  GTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYIL 397

Query: 889  VCSTMT---EARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECI-ECATCRQDICEHFA 1056
              S +T        + + D T+LWH RLG+ +   +  LS++  +      + + CEH  
Sbjct: 398  QGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCV 457

Query: 1057 WDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
            + K K V FST  H+    LD +H  + GPSKV S  G
Sbjct: 458  FGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGG 495



 Score = 94.7 bits (234), Expect(2) = 1e-55
 Identities = 59/155 (38%), Positives = 87/155 (56%), Gaps = 5/155 (3%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*EL---HSREPSEDPF*ELCLE 1357
            +D+ SR + V  ++H+N+    F KWK LVE QTG++V +L   +  E  E  F E C  
Sbjct: 503  IDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCAN 562

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGA--DAAL*TEALTYACYITN 1531
             GI R  +  G    Q + VAE + R + ++   M+S++G      L  EA + ACY+ N
Sbjct: 563  HGIARHKTIPGKP--QQNGVAERLNRTILERARCMLSNAGLWHQRELWVEAASTACYLIN 620

Query: 1532 RLPSAAIKGKIPLEISSSKATSDYGSLRVFGCPAH 1636
            R P +++  KIP EI S     DY +LR+FGCPA+
Sbjct: 621  RSPHSSLNFKIPEEIWSGNPI-DYSNLRIFGCPAY 654


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  155 bits (393), Expect(2) = 1e-55
 Identities = 109/340 (32%), Positives = 172/340 (50%), Gaps = 10/340 (2%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEESLNASN--GEAFIVRGRGSERQGQENQS*SKSRDRP 351
            GR  L   EV  AL + ELR+K       N  GE  + RGR   + G  ++S  +S+ + 
Sbjct: 669  GRDDLTLEEVKNALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRSQSKK 728

Query: 352  GKFKIGRNQCSLCKKRGNCRHECAEREE-TKKKKSQPMQANIMQREGNXXXXXXXXXXXX 528
                  R QC  CKK G+ + +C +R+E ++ ++ Q  +AN+   + +            
Sbjct: 729  ------RIQCYYCKKYGHMKVDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVSDS 782

Query: 529  XXXXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYDVFMRNDSTSQVHGTGTIHIRTHD 708
                      W+ D+ AT H+   K+ F+   +    V M ND   QV G GT+ I+  D
Sbjct: 783  YAGGR-----WILDTGATFHISTSKDAFSTYEKHSGSVLMGNDHACQVMGIGTVRIKMFD 837

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYYL 888
            G+VR L +VR+IP ++ N+IS+ TL  +G + + E   L+V  G+  V++G   R LY+L
Sbjct: 838  GIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFL 897

Query: 889  VCSTMT----EARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECI--ECATCRQDICEH 1050
              S++T     +    ++ D T+LWH RLG+ +   L  LS+R  +  +C T + + CEH
Sbjct: 898  DGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQC-TGKLNFCEH 956

Query: 1051 FAWDKK-GVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
              + K+  VKFST IH+    +D  H  + GPS   S  G
Sbjct: 957  CVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGG 996



 Score = 93.2 bits (230), Expect(2) = 1e-55
 Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1184 FVDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCL 1354
            F+D++SR + V  +K + +    F ++K L+E QTG+++    +    E     F E C 
Sbjct: 1003 FIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFNEFCK 1062

Query: 1355 EQGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNR 1534
             +GI R  + +     Q + VAE + R L ++   M S++G       EA+  ACY+ NR
Sbjct: 1063 NEGIVRHRTVRRTP--QQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNR 1120

Query: 1535 LPSAAIKGKIPLEISSSKATSDYGSLRVFGCPAHE-------KTGSKEFVFIRI-KGVLG 1690
             PS AI+ K P E+ S  + +DY  LRVFGCPA+        K  +K+ +F+   +GV G
Sbjct: 1121 SPSTAIELKTPEEVWSG-SPADYSGLRVFGCPAYAHVNEGKLKPRAKKCIFLGYGQGVKG 1179

Query: 1691 YKLW 1702
            Y+LW
Sbjct: 1180 YRLW 1183


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  155 bits (393), Expect(2) = 1e-55
 Identities = 109/340 (32%), Positives = 172/340 (50%), Gaps = 10/340 (2%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEESLNASN--GEAFIVRGRGSERQGQENQS*SKSRDRP 351
            GR  L   EV  AL + ELR+K       N  GE  + RGR   + G  ++S  +S+ + 
Sbjct: 690  GRDDLTLEEVKNALSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRSQSKK 749

Query: 352  GKFKIGRNQCSLCKKRGNCRHECAEREE-TKKKKSQPMQANIMQREGNXXXXXXXXXXXX 528
                  R QC  CKK G+ + +C +R+E ++ ++ Q  +AN+   + +            
Sbjct: 750  ------RIQCYYCKKYGHMKVDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVSDS 803

Query: 529  XXXXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYDVFMRNDSTSQVHGTGTIHIRTHD 708
                      W+ D+ AT H+   K+ F+   +    V M ND   QV G GT+ I+  D
Sbjct: 804  YAGGR-----WILDTGATFHISTSKDAFSTYEKHSGSVLMGNDHACQVMGIGTVRIKMFD 858

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYYL 888
            G+VR L +VR+IP ++ N+IS+ TL  +G + + E   L+V  G+  V++G   R LY+L
Sbjct: 859  GIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFL 918

Query: 889  VCSTMT----EARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECI--ECATCRQDICEH 1050
              S++T     +    ++ D T+LWH RLG+ +   L  LS+R  +  +C T + + CEH
Sbjct: 919  DGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSVLSKRGLLSGQC-TGKLNFCEH 977

Query: 1051 FAWDKK-GVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
              + K+  VKFST IH+    +D  H  + GPS   S  G
Sbjct: 978  CVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGG 1017



 Score = 93.2 bits (230), Expect(2) = 1e-55
 Identities = 63/184 (34%), Positives = 99/184 (53%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1184 FVDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCL 1354
            F+D++SR + V  +K + +    F ++K L+E QTG+++    +    E     F E C 
Sbjct: 1024 FIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGLEFCSGEFNEFCK 1083

Query: 1355 EQGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNR 1534
             +GI R  + +     Q + VAE + R L ++   M S++G       EA+  ACY+ NR
Sbjct: 1084 NEGIVRHRTVRRTP--QQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVNTACYLVNR 1141

Query: 1535 LPSAAIKGKIPLEISSSKATSDYGSLRVFGCPAHE-------KTGSKEFVFIRI-KGVLG 1690
             PS AI+ K P E+ S  + +DY  LRVFGCPA+        K  +K+ +F+   +GV G
Sbjct: 1142 SPSTAIELKTPEEVWSG-SPADYSGLRVFGCPAYAHVNEGKLKPRAKKCIFLGYGQGVKG 1200

Query: 1691 YKLW 1702
            Y+LW
Sbjct: 1201 YRLW 1204


>gb|KZV56298.1| hypothetical protein F511_00295 [Dorcoceras hygrometricum]
          Length = 1309

 Score =  157 bits (398), Expect(2) = 9e-55
 Identities = 110/345 (31%), Positives = 167/345 (48%), Gaps = 15/345 (4%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEESLNASNGEAFIVRGRGSERQGQENQS*---SKSRDR 348
            G+ TL  +EV +AL + EL +K E+   S GE   VRGR  +R+ +  +     S+SR R
Sbjct: 165  GKETLTMAEVKSALNSKELHKKNETKMESTGEGLNVRGRTYKRESRNEKGGKHRSQSRTR 224

Query: 349  PGKFKIGRNQCSLCKKRGNCRHECAERE-ETKKKKSQPMQANIMQREGNXXXXXXXXXXX 525
                  G+ +C +C K G+ + +C +R     +++  P  A ++                
Sbjct: 225  ------GKLKCFVCHKEGHFKKDCPDRRARNPERRKDPGDAAVVS-------DGYESAEV 271

Query: 526  XXXXXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYD-VFMRNDSTSQVHGTGTIHIRT 702
                       WV DS  + H+CP+K +F  LVE     V + N+   +V G G++ ++ 
Sbjct: 272  LVVSRTNKQDCWVMDSGCSFHMCPIKSWFQNLVEEESGHVLLGNNRECKVMGIGSVLLKM 331

Query: 703  HDGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLY 882
            HDG VR +  VRY+P LR N++SIG L  +G  V IE  +++V +GS  VM+G Q   LY
Sbjct: 332  HDGCVRTITEVRYVPDLRRNLLSIGMLDSKGFNVKIEGGTMKVIKGSLTVMRGSQDNGLY 391

Query: 883  YLVCSTMTEARKPLVED-DHTRLWHWRLGYATMDSLLRLSRRECIE---------CATCR 1032
             L  ST+T +    V   +  RLWH RLG+ +   L+ LS++  +          C  C 
Sbjct: 392  ILEASTVTGSSNAAVGGANKARLWHLRLGHVSEKGLVELSKQNLLGRDKVDDLSFCDECV 451

Query: 1033 QDICEHFAWDKKGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
               C         V+F     Q   +LD VH  + GPS+VAS  G
Sbjct: 452  LGKCSR-------VRFKRSSTQSKGILDYVHSDLWGPSRVASRGG 489



 Score = 88.6 bits (218), Expect(2) = 9e-55
 Identities = 60/193 (31%), Positives = 100/193 (51%), Gaps = 14/193 (7%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*EL---HSREPSEDPF*ELCLE 1357
            +D++SR + V  +K +++A + F  WK +VE QTG+++ +L   +  E     F + C +
Sbjct: 497  IDDYSRKLWVVTLKSKDEAFKAFKDWKMMVETQTGKKIKKLRTDNGLEYCSTEFKDFCKQ 556

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R Y+       Q + +AE + R + ++V  M++ SG       EA+  A Y+ NR 
Sbjct: 557  EGIVRHYTVPNTP--QQNGLAERMNRTILERVRCMLADSGLPRMFWAEAVVTASYLINRC 614

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCPAHE-------KTGSKEFVFIRI-KGVLGY 1693
            PS A++ K P E+ +     D+ +LR FGC A         +  +K+ V +   + V GY
Sbjct: 615  PSTALEFKTPQEVWTGH-RPDFSNLRAFGCTAFAHIRQDKLQPRAKKCVLLGYPENVKGY 673

Query: 1694 KLW---DSTSRCL 1723
            KLW       RCL
Sbjct: 674  KLWCIETGEERCL 686


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  141 bits (355), Expect(2) = 7e-54
 Identities = 106/344 (30%), Positives = 169/344 (49%), Gaps = 10/344 (2%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEE--SLNASNGEAFIVRGRGSERQGQENQS*SKSRDRP 351
            G+ T+   EV +AL + ELR K    S +      F    +G +  G++N+  SK   +P
Sbjct: 163  GKDTVSLEEVRSALHSRELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGA-KP 221

Query: 352  GKFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXX 531
                   + C+ CK++G+ + +C ++++  +K+S  + A + + + N             
Sbjct: 222  D------DVCNYCKEKGHWKFDCPKKKKQSEKQS--VSAAVAEEDTNSEEDIALVADEHT 273

Query: 532  XXXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVY--DVFMRNDSTSQVHGTGTIHIRTH 705
                     WV DS A+ H+CP +E+FT   E+V    + M N S  +V GTG+I IRTH
Sbjct: 274  HHSDV----WVLDSGASYHICPRREWFT-TYEQVDGGSISMANSSVCKVVGTGSIKIRTH 328

Query: 706  DGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYY 885
            DG    L  VR++P +  N+IS+  L  +G   + +   LRV +GS +++KGV    LY+
Sbjct: 329  DGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYF 388

Query: 886  LVCSTMT----EARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIECATCRQ-DICEH 1050
            L  ST+T     A     + D T+LWH RLG+     +  LS+ + +     +  + CEH
Sbjct: 389  LQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEH 448

Query: 1051 FAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEGNTLF 1179
              + K    KF   IH+    LD +H    GP +V SL G   F
Sbjct: 449  CVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPCRVESLGGCRFF 492



 Score =  102 bits (253), Expect(2) = 7e-54
 Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 14/195 (7%)
 Frame = +2

Query: 1175 CFFFV---DEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DP 1336
            C FFV   D++SR   V +MKH+++A + F +WK L+E QTG+++  L +    E     
Sbjct: 489  CRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNGLEFCWSE 548

Query: 1337 F*ELCLEQGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYA 1516
            F + C ++GI R  + +     Q + VAE + + L ++   M+S++G D     EA++ A
Sbjct: 549  FDQFCKDEGIARHRTVRNTP--QQNGVAERMNQTLLERARCMLSNAGLDRRFWAEAVSTA 606

Query: 1517 CYITNRLPSAAIKGKIPLEISSSKATSDYGSLRVFGCPA--HEKTG-----SKEFVFIRI 1675
            CY+ NR P   I+ K P+E+ S KA +DY +L+ FGC A  H   G     +K+ VF+  
Sbjct: 607  CYLINRGPHTGIQCKTPMEMWSGKA-ADYSNLKAFGCTAYYHVSEGKLEPRAKKGVFVGY 665

Query: 1676 -KGVLGYKLWDSTSR 1717
              GV G+++W    +
Sbjct: 666  GDGVKGFRIWSPAEK 680


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1326

 Score =  158 bits (400), Expect(2) = 1e-53
 Identities = 107/340 (31%), Positives = 170/340 (50%), Gaps = 11/340 (3%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRK--EESLNASNGEAFIVRGRGSERQGQENQS*SKSRDRPG 354
            R  L  +EV  AL N E  +   +   ++S GEA  VRGR  +R   ++    KS+ R  
Sbjct: 168  RDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSSDRDKSQSRGR 227

Query: 355  KFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXX 534
                G+  C  CKK+ +   EC + +  +K+KS    + +   E +              
Sbjct: 228  SKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVA 287

Query: 535  XXXXXXXXWVSDSEATCHLCPMKEFFTGL--VERVYDVFMRNDSTSQVHGTGTIHIRTHD 708
                    W+ D+  + H+C  +++F+    V+    V M +D+  ++ G G++ I+THD
Sbjct: 288  SHDE----WILDTACSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHD 343

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKG-VQVRNLYY 885
            GM R L++VR+IPG+  N+IS+ TL  EG K +     ++V++GS + M G +   NLY 
Sbjct: 344  GMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDMNSANLYV 403

Query: 886  LVCSTM----TEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-CATCRQDICEH 1050
            L  ST+    T A     E   T LWH RLG+ +   +  L +R  ++ C   +   CEH
Sbjct: 404  LRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGKMKFCEH 463

Query: 1051 FAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
              + K K VKF+T +H+   +LD VH  + GPS+ A L G
Sbjct: 464  CVFGKHKRVKFNTSVHRTKGILDYVHTDLWGPSRKAYLGG 503



 Score = 84.0 bits (206), Expect(2) = 1e-53
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            +D++SR +    +KH++     F +WK  +E QT + V  L +    E   D F + C +
Sbjct: 511  IDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDNGGEFCSDAFDDYCRK 570

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R ++       Q + VAE + R +  K   M+S++  +     EA   ACY+ NR 
Sbjct: 571  EGIVRHHTIPYTP--QQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRS 628

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIRI------KGVLGY 1693
            PS  +  K P+E+ S    +DY  LRVFGC   AH   G  E   I+        GV  Y
Sbjct: 629  PSIPLNKKTPIEVWSG-MPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKRY 687

Query: 1694 KLWD 1705
            KLW+
Sbjct: 688  KLWN 691


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score =  158 bits (399), Expect(2) = 1e-52
 Identities = 107/340 (31%), Positives = 169/340 (49%), Gaps = 11/340 (3%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRK--EESLNASNGEAFIVRGRGSERQGQENQS*SKSRDRPG 354
            R  L  +EV  AL N E  +   +   ++S GEA  VRGR  +R   ++    KS+ R  
Sbjct: 168  RDELTLAEVYEALQNREKMKGMVQSYASSSKGEALQVRGRSEQRTYNDSNDHDKSQSRGR 227

Query: 355  KFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXX 534
                G+  C  CKK+ +   EC + +  +K+KS    + +   E +              
Sbjct: 228  SKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVA 287

Query: 535  XXXXXXXXWVSDSEATCHLCPMKEFFTGL--VERVYDVFMRNDSTSQVHGTGTIHIRTHD 708
                    W+ D+  + H+C  +++F+    V+    V M +D+  ++ G G++ I+THD
Sbjct: 288  SHDE----WILDTACSFHICINRDWFSSYKSVQNEDVVRMGDDNPREIVGIGSVQIKTHD 343

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKG-VQVRNLYY 885
            GM R L++VR+IPG+  N+IS+ TL  EG K +     ++V++GS + M G +   NLY 
Sbjct: 344  GMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYV 403

Query: 886  LVCSTM----TEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-CATCRQDICEH 1050
            L  ST+    T A     E   T LWH RLG+ +   +  L +R  ++ C       CEH
Sbjct: 404  LRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEH 463

Query: 1051 FAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
              + K K VKF+T +H+   +LD VH  + GPS+  SL G
Sbjct: 464  CVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 503



 Score = 81.3 bits (199), Expect(2) = 1e-52
 Identities = 61/184 (33%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            +D++SR      +KH++     F + K ++E QT + V  L +    E   D F + C +
Sbjct: 511  IDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDNGGEFCSDAFDDYCRK 570

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R ++       Q + VAE + R +  K   M+S++  +     EA   ACY+ NR 
Sbjct: 571  EGIVRHHTIPYTP--QQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRS 628

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIRI------KGVLGY 1693
            PS  +  K P+EI S    +DY  LRVFGC   AH   G  E   I+        GV GY
Sbjct: 629  PSIPLNKKTPIEIWSG-MPADYSQLRVFGCTAYAHVDNGKLEPRAIKCLFLGYGSGVKGY 687

Query: 1694 KLWD 1705
            KLW+
Sbjct: 688  KLWN 691


>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 609

 Score =  142 bits (358), Expect(2) = 2e-52
 Identities = 97/342 (28%), Positives = 160/342 (46%), Gaps = 8/342 (2%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEESLNAS-NGEAFIVRGRGSERQGQENQS*SKSRDRPG 354
            G+  +   EV ++L + EL  K  + +   NG   +        + ++ Q   K++  P 
Sbjct: 101  GKECITMEEVKSSLHSRELWFKASANSEGVNGAGLLAFNSTKNGKKKKEQGKKKTKVNP- 159

Query: 355  KFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXX 534
                 R+ C+ CK+ G+ + +C ++   K       + +  + E                
Sbjct: 160  -----RDICNYCKEPGHWKKDCPKKRNQKSVAVAAQEDSSFENE---------LVLSIVD 205

Query: 535  XXXXXXXXWVSDSEATCHLCPMKEFFTGLVERVY-DVFMRNDSTSQVHGTGTIHIRTHDG 711
                    WV DS  + H+CP + +F    ++   DVFM ND   +  G GTI I+ HDG
Sbjct: 206  NHQHSAEQWVLDSGCSYHMCPNRSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDG 265

Query: 712  MVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYYLV 891
            ++R L  VR++P L+ N+IS+G L  +G K  +E   + +++GS +V++G++  NLY L 
Sbjct: 266  VIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQ 325

Query: 892  CSTMTEARKPLVEDDH----TRLWHWRLGYATMDSLLRLSRRECIECATCRQ-DICEHFA 1056
             ST   +    V D H    T LWH RLG+ +   ++ L +++ +   T ++   CEH  
Sbjct: 326  GSTNLISESVSVADKHTPDLTHLWHMRLGHMSERGMMVLRKQKLLGDHTVKELKFCEHCV 385

Query: 1057 WDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEGNTLF 1179
              K   +KF    H     LD VH    GPS+V SL G   F
Sbjct: 386  VGKHHRIKFPKAQHTTKSTLDYVHSDCWGPSRVPSLGGGRYF 427



 Score = 95.9 bits (237), Expect(2) = 2e-52
 Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 3/150 (2%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            +D++S    + IMKH+NQA + F +WK LVE QTG+R+  L +    E     F + C +
Sbjct: 431  IDDYSGMTWIFIMKHKNQAFKYFKEWKILVENQTGKRIKRLRTDNGLEFCSAEFNDYCKK 490

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R Y+ +     Q + VAE + R L +K  Y++S++G   +   EA+  ACY+ N  
Sbjct: 491  EGIVRQYTVRNTP--QQNGVAERMNRTLLEKRRYLLSNAGLTKSFWAEAVNTACYLVNGS 548

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGC 1627
            PS  I  K P E+ S+K  ++Y  LR+FGC
Sbjct: 549  PSTIIGCKTPTEVWSTK-PANYSILRIFGC 577


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  147 bits (372), Expect(2) = 3e-52
 Identities = 103/340 (30%), Positives = 168/340 (49%), Gaps = 11/340 (3%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRK--EESLNASNGEAFIVRGRGSERQGQENQS*SKSRDRPG 354
            R  L  +EV  AL N E  +   +   ++S GEA  V+GR  +R   ++    KS+ R  
Sbjct: 168  RDELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVKGRSEQRTYNDSNDRDKSKSRGR 227

Query: 355  KFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXX 534
                G+  C  CKK+ +   EC + +  +K+KS    + +   + +              
Sbjct: 228  SKSRGKKFCKYCKKKIHFIKECWKLQNKEKRKSDGKASVVTSAKNSDSGDCLVVFAGCVA 287

Query: 535  XXXXXXXXWVSDSEATCHLCPMKEFFTGL--VERVYDVFMRNDSTSQVHGTGTIHIRTHD 708
                    W+ D+  + H+   +++F+    V+    V M ND+  ++ G G++ I+THD
Sbjct: 288  SHDE----WILDTACSFHIYINRDWFSSYKSVQNGDVVRMGNDNPREIVGIGSVQIKTHD 343

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKG-VQVRNLYY 885
            G+ R L++VR+IPG+  N+IS+ TL  EG K +     ++V++GS + M G +   NLY 
Sbjct: 344  GITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYV 403

Query: 886  LVCSTM----TEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-CATCRQDICEH 1050
            L  ST+    T A     E + T LWH RLG+ +   +  L +R  ++ C       CE 
Sbjct: 404  LRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCER 463

Query: 1051 FAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
              + K K VKF+T +H+   +LD VH  + GPS+  SL G
Sbjct: 464  CVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 503



 Score = 90.1 bits (222), Expect(2) = 3e-52
 Identities = 60/184 (32%), Positives = 93/184 (50%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            +D++SR +    +KH++     F +WK ++E QT + V  L +    E   D F + C +
Sbjct: 511  IDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDNAGEFCSDAFDDYCRK 570

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R ++       Q + VAE + R +  K   M+S++  +     EA   ACY+ NR 
Sbjct: 571  EGIVRHHTIPYTP--QQNGVAERMNRTIISKARCMLSNARMNKRFWAEAANTACYLINRS 628

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCPAHEKTGSKEFVFIRIK--------GVLGY 1693
            PS  +  K P+EI S    +DY  LRVFGC A+    +++     IK        GV GY
Sbjct: 629  PSIPLNKKTPIEIWSG-MPADYSQLRVFGCTAYAHVDNEKLEPRAIKCLFLGYGLGVKGY 687

Query: 1694 KLWD 1705
            KLW+
Sbjct: 688  KLWN 691


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  140 bits (353), Expect(2) = 1e-51
 Identities = 108/351 (30%), Positives = 166/351 (47%), Gaps = 22/351 (6%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRKEESLNASNGEA--FIVRGRGSERQGQENQS*SKSRDRPG 354
            R TL   EV  AL   E  +K      SN +A   +VRGR      QE  + +KSRD+  
Sbjct: 75   RDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQ-----QEKNTNNKSRDKSS 129

Query: 355  KFKIGRNQ-------CSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXX 513
                GR++       C  CK+ G+   EC + ++  K+  + +     + EG        
Sbjct: 130  SIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKGKKEEEGKAAVVTDE 189

Query: 514  XXXXXXXXXXXXXXX----WVSDSEATCHLCPMKEFFTGLVERVYD--VFMRNDSTSQVH 675
                               W+ D+  T H+CP +++F    E V    V M +D+  +V 
Sbjct: 190  KSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFA-TYEAVQGGTVLMGDDTPCEVA 248

Query: 676  GTGTIHIRTHDGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVM 855
            G GT+ I+  DG +R L +VR+IP L+ ++IS+ TL  +G K +     L+VT+GS +VM
Sbjct: 249  GIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVM 308

Query: 856  KG-VQVRNLYYL----VCSTMTEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIEC 1020
            K  ++  NLY+L    +   +      L   D T LWH RLG+ +   L  LS+R  ++ 
Sbjct: 309  KADIKYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDG 368

Query: 1021 ATC-RQDICEHFAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
             +  +   CEH  + K K VKF+T  H    +LD VH  + GP++  S  G
Sbjct: 369  QSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 419



 Score = 95.5 bits (236), Expect(2) = 1e-51
 Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            VD++SR +    +KH+ QA  VF +WK +VE QT R+V  L +    E     F   C  
Sbjct: 427  VDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMELCSKIFKSYCKS 486

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R Y+       Q + VAE + R +  K   M+S++        EA++ ACY+ NR 
Sbjct: 487  EGIVRHYTVPHTP--QQNGVAERMNRTIISKARCMLSNASLPKQFWAEAVSTACYLINRS 544

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIR------IKGVLGY 1693
            PS AI  K P+E+ S  + ++Y  LRVFGC   AH   G  E   I+      + GV GY
Sbjct: 545  PSYAIDKKTPIEVWSG-SPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIFLGYLSGVKGY 603

Query: 1694 KLW 1702
            KLW
Sbjct: 604  KLW 606


>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 448

 Score =  141 bits (355), Expect(2) = 1e-51
 Identities = 87/274 (31%), Positives = 136/274 (49%), Gaps = 7/274 (2%)
 Frame = +1

Query: 379  CSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXXXXXXXXXX 558
            C+ CK+ G+ +++C      KKK  +P    + +   +                      
Sbjct: 1    CNYCKEPGHWKNDCP-----KKKNQKPTAVTVQESTSSSDNELVLSIVDNHQQSADQ--- 52

Query: 559  WVSDSEATCHLCPMKEFFTGLVERVYD-VFMRNDSTSQVHGTGTIHIRTHDGMVRKLQNV 735
            WV DS  + H+CP + +F    ER+   VFM ND   +  G GTI +R HDG++R L  V
Sbjct: 53   WVLDSGCSYHMCPNRSWFLTYEERLGGRVFMGNDMPCKTVGIGTIQLRMHDGVIRTLTEV 112

Query: 736  RYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKGVQVRNLYYLVCSTMTEAR 915
            R++P L+ N+IS+G L  +G K  ++   + +  GS +VM+G +  NLY L  ST + + 
Sbjct: 113  RHVPDLKKNLISVGVLDSKGFKCNVKNGVMEIKRGSTVVMRGFKKGNLYMLQGSTSSISE 172

Query: 916  KPLVED----DHTRLWHWRLGYATMDSLLRLSRRECIECATCRQ-DICEHFAWDKK-GVK 1077
               V +    D T LWH RLG+ +   ++ LSR++ +   T ++   CEH  + K+  +K
Sbjct: 173  SVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELRFCEHCVFGKQHRIK 232

Query: 1078 FSTFIHQPVRLLDVVHMHIQGPSKVASLEGNTLF 1179
            F    H     LD +H    GPS+V SL G   F
Sbjct: 233  FPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYF 266



 Score = 94.7 bits (234), Expect(2) = 1e-51
 Identities = 63/182 (34%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            +D++SR   + I KH+NQA + F +WK L+E Q  +RV  L +    E     F + C  
Sbjct: 270  IDDYSRMTWIFITKHKNQAFKCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFNDFCKA 329

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R Y+ +     Q + VAE + + L ++   ++S++G   +   EA++  CY+ NR 
Sbjct: 330  EGIARQYTVRNTP--QQNGVAERMNKTLLERARCLLSNAGLSRSFWAEAISTTCYLINRS 387

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCPA--HEKTG-----SKEFVFIRI-KGVLGY 1693
            PS  I  K P+E+ S+K  ++Y  LRVFGC A  H   G     SK+ +F+    GV GY
Sbjct: 388  PSTVIDCKTPIEVWSNK-PANYSLLRVFGCNAYYHVNEGKLEPRSKKGLFMGYGDGVKGY 446

Query: 1694 KL 1699
            ++
Sbjct: 447  RI 448


>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1175

 Score =  153 bits (386), Expect(2) = 2e-51
 Identities = 104/340 (30%), Positives = 169/340 (49%), Gaps = 11/340 (3%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRK--EESLNASNGEAFIVRGRGSERQGQENQS*SKSRDRPG 354
            RS L  +EV  AL N E  +   +   ++S GEA  VRGR  +R   ++    K++ R  
Sbjct: 63   RSELTLAEVYEALQNREKMKGMVQSDASSSKGEALQVRGRSEQRTYNDSNDRDKNQSRGR 122

Query: 355  KFKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXX 534
                G+  C  CKK+ +   EC + +  +K+KS    + +   + +              
Sbjct: 123  SKSRGKKFCKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSADNSDSGDCLVVFVVCVS 182

Query: 535  XXXXXXXXWVSDSEATCHLCPMKEFFTGL--VERVYDVFMRNDSTSQVHGTGTIHIRTHD 708
                    W+ D+  + H+C  +++F+    V+    V M +D+  ++ G G++ I+THD
Sbjct: 183  SHDE----WILDTTCSFHICINRDWFSSYKSVQNGDVVRMGDDNPREIVGIGSVQIKTHD 238

Query: 709  GMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKG-VQVRNLYY 885
            GM R L++VR+IP +  N+IS+ TL  EG K +     ++V++GS + M G +   NLY 
Sbjct: 239  GMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDMNSANLYV 298

Query: 886  LVCSTM----TEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-CATCRQDICEH 1050
            L  ST+    T A     E   T +WH RLG+ +   +  L +R  ++ C       CEH
Sbjct: 299  LRGSTLHGYVTAAVVSKDEPSKTNMWHMRLGHMSELGMAELMKRNLLDGCTQGNMKFCEH 358

Query: 1051 FAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
              + K K VKF+T +H+   +LD VH  + GPS+  SL G
Sbjct: 359  CVFGKHKRVKFNTSVHRTKGILDYVHADLWGPSRKPSLGG 398



 Score = 81.6 bits (200), Expect(2) = 2e-51
 Identities = 57/184 (30%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPS---EDPF*ELCLE 1357
            +D++SR +    +KH++     F +WK +++ QT + V  L +        D F + C +
Sbjct: 406  IDDYSRKVWPYFLKHKDDTFAAFKEWKVMIKRQTEKEVKVLRTDNGGGFCSDAFDDYCRK 465

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI   ++       Q + VAE + R +  K   M+S++  +     EA   ACY+ NR 
Sbjct: 466  EGIVMHHTIPYTP--QQNGVAERMNRTIISKARCMLSNARMNKRFWAEAAKTACYLINRS 523

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIRI------KGVLGY 1693
            PS ++  K P+E+ S    ++Y  LRVFGC   AH   G  E   I+        GV GY
Sbjct: 524  PSISLNKKTPIEVWSG-MPANYSQLRVFGCTAYAHVNNGKLEPRAIKCLFLGYGSGVKGY 582

Query: 1694 KLWD 1705
            KLW+
Sbjct: 583  KLWN 586


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  132 bits (332), Expect(3) = 3e-50
 Identities = 92/341 (26%), Positives = 166/341 (48%), Gaps = 7/341 (2%)
 Frame = +1

Query: 178  GRSTLGYSEVTAALVNFELRRKEESLNASNGEAFIVRGRGSERQGQENQS*SKSRDRPGK 357
            G+ ++  + +T+AL++   RR+      S GE   V+G     + +      K R +   
Sbjct: 95   GKDSITLTSITSALLSHGQRRQNAE-GGSQGEGLYVQGCSDRGRNKGKAGSGKKRSKSKN 153

Query: 358  FKIGRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXXXXXXXX 537
             K   ++C  CK+ G+ + +C   ++     +  +  +    EG+               
Sbjct: 154  RKT--SECYSCKQIGHWKRDCPNIKQGSSTSANLVHTDDSCSEGDILCVSSSKCTDA--- 208

Query: 538  XXXXXXXWVSDSEATCHLCPMKEFFTGLVERVYD-VFMRNDSTSQVHGTGTIHIRTHDGM 714
                   W+ DS  + H+ P +E+FT      +  V++ +D    + G G I I   DG 
Sbjct: 209  -------WILDSGCSYHMTPNREWFTTFRSGSFGFVYLGDDKACAITGIGQIKIAMDDGG 261

Query: 715  VRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNS--LRVTEGSRIVMKGVQVR-NLYY 885
            VR L NVRYIP LR N+IS+GTL   G     +R+   L+V++G+  VM+  +   N+Y 
Sbjct: 262  VRTLTNVRYIPELRKNLISLGTLQENGYSYRSDRDRDILKVSKGALTVMRVKRTAGNIYK 321

Query: 886  LVCSTMT-EARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-CATCRQDICEHFAW 1059
            L+ +T+  +      ++D T+LWH RLG+ +   ++ L +R  ++   +C+ D+C++   
Sbjct: 322  LLGNTVVGDVASVESDNDATKLWHLRLGHLSERGMMELHKRSLLKGVCSCKMDLCKYCVL 381

Query: 1060 DKK-GVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEGNTLF 1179
             K+  V+F    H+   +LD VH  + GP++ AS+ G+  F
Sbjct: 382  GKQCRVRFKPMKHKTEGILDYVHSDVWGPTREASMGGSRYF 422



 Score = 93.2 bits (230), Expect(3) = 3e-50
 Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 14/192 (7%)
 Frame = +2

Query: 1184 FVDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCL 1354
            F D+ SR + V  MK +++    F  WK  VE QTGR++  L S   +E     F + C 
Sbjct: 425  FTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRKIKYLRSDNGTEYTNSQFEKFCE 484

Query: 1355 EQGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNR 1534
            + GI+R +S +  K  Q + VAE +   L ++   +   +G       E +  ACY+ NR
Sbjct: 485  QHGIQRHFSVR--KTPQQNGVAERMNMSLTERARCLQLKAGLSKGFWAETINMACYLINR 542

Query: 1535 LPSAAIKGKIPLEISSSKATSDYGSLRVFGCPAHEKTG----------SKEFVFIRI-KG 1681
             P A+++GK+  E+ + K   D  +LR+FGCP                SK+ +F+   KG
Sbjct: 543  SPRASLEGKVAEEVWTGKPI-DLDNLRIFGCPTFVHISSEDRSKLDPKSKKCIFVGYSKG 601

Query: 1682 VLGYKLWDSTSR 1717
            V G+KLWD  S+
Sbjct: 602  VKGFKLWDPVSK 613



 Score = 26.6 bits (57), Expect(3) = 3e-50
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 1726 MSRCIILSRGVVFDEVSMCKRSSSVQ-EENGQTKMISQWVEIDVSP 1860
            +S+ ++LSR VVFDE  M K+S   +  E+       + +++++ P
Sbjct: 611  VSKKMVLSRDVVFDEQFMLKQSRETEVTESAGGSSGKEVIQVELEP 656


>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
          Length = 1181

 Score =  140 bits (352), Expect(2) = 5e-50
 Identities = 106/348 (30%), Positives = 167/348 (47%), Gaps = 19/348 (5%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRKEESLNASNGEAFIVRGRGSERQGQENQS*SKSRDRPGKF 360
            R TL   EV  AL   E  +K      SN +A  +  RGS+   QE  + +KSRD+    
Sbjct: 166  RDTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGSQ---QEKNTNNKSRDKSSSS 222

Query: 361  KIGRNQ-------CSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXX 519
              GR++       C  CK+ G+   +C + ++  K+  + +     + EG          
Sbjct: 223  YRGRSKSRGRYKSCKYCKRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKS 282

Query: 520  XXXXXXXXXXXXX----WVSDSEATCHLCPMKEFF-TGLVERVYDVFMRNDSTSQVHGTG 684
                             W+ D+  T H+CP +++F T  V +   V M +D+  +V G G
Sbjct: 283  DAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIG 342

Query: 685  TIHIRTHDGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMK-G 861
            T+ I+  DG +R L +VR+IP L+ ++IS+ TL  +G K +     L+VT+GS +VMK  
Sbjct: 343  TVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKAS 402

Query: 862  VQVRNLYYL----VCSTMTEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIE-CAT 1026
            ++  NLY+L    +   +      L   D T LWH RLG+ +   L  LS+R  ++  + 
Sbjct: 403  IKSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSI 462

Query: 1027 CRQDICEHFAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
             +   CEH  + K K VKF+T  H    +LD VH  + GP++  S  G
Sbjct: 463  SKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 510



 Score = 90.5 bits (223), Expect(2) = 5e-50
 Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            VD++SR +    +KH+ QA  VF +WK +VE QT R+V  L +    E     F   C  
Sbjct: 518  VDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKS 577

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R Y+       Q + VAE + R++  K   M+S++G       EA++ ACY+ NR 
Sbjct: 578  EGIVRHYTVPHTP--QQNGVAERMNRIIISKARCMLSNAGLPKQFWAEAVSTACYLINRS 635

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIRI------KGVLGY 1693
            PS A K K P+E+ S  + ++Y  L+VFGC   AH   G  E   I+         V GY
Sbjct: 636  PSYANK-KTPIEVWSG-SPANYSDLKVFGCTAYAHVDNGKLEPRAIKCIFLGYPSSVKGY 693

Query: 1694 KLW 1702
            KLW
Sbjct: 694  KLW 696


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  135 bits (339), Expect(2) = 6e-50
 Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 21/350 (6%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRKEESLNASNGEA--FIVRGRGSERQGQENQS*SKSRDRPG 354
            R TL   EV  AL   E  +K      SN +A   IV GR      QE  + ++SRD+  
Sbjct: 373  RDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQ-----QEKNTKNQSRDKSS 427

Query: 355  KFKIGRNQ-------CSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXX 513
                GR++       C  CK+ G+   EC +  +  K+  + +     + EG        
Sbjct: 428  SSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDE 487

Query: 514  XXXXXXXXXXXXXXX----WVSDSEATCHLCPMKEFF-TGLVERVYDVFMRNDSTSQVHG 678
                               W+ ++    H+CP +++F T    +V  V M +D+  +V G
Sbjct: 488  KSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAG 547

Query: 679  TGTIHIRTHDGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMK 858
             GT+ I+  DG +R L +VR+IP L+ ++IS+ TL  +G K +     L+VT+GS +VMK
Sbjct: 548  IGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 607

Query: 859  G-VQVRNLYYL----VCSTMTEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIECA 1023
              ++  NLY+L    +   +      L   D T LWH RLG+ T   L  LS+R  ++  
Sbjct: 608  ADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQ 667

Query: 1024 TC-RQDICEHFAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
            +  +   CEH  + K K VKF+T  H    +LD VH  + GP++  S  G
Sbjct: 668  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 717



 Score = 95.1 bits (235), Expect(2) = 6e-50
 Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            VD++SR +    +KH+ QA  VF +WK +VE QT R+V  L +    E     F   C  
Sbjct: 725  VDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKS 784

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R Y+       Q + VAE + R +  K   ++S++G       EA++ ACY+ NR 
Sbjct: 785  EGIVRHYTVPHTP--QQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRS 842

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIRI------KGVLGY 1693
            PS AI  K P+E+ S  + ++Y  LRVFGC   AH   G  E   I+        GV GY
Sbjct: 843  PSYAIDKKTPIEVWSG-SPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 901

Query: 1694 KLW 1702
            KLW
Sbjct: 902  KLW 904


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  135 bits (339), Expect(2) = 6e-50
 Identities = 106/350 (30%), Positives = 164/350 (46%), Gaps = 21/350 (6%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRRKEESLNASNGEA--FIVRGRGSERQGQENQS*SKSRDRPG 354
            R TL   EV  AL   E  +K      SN +A   IV GR      QE  + ++SRD+  
Sbjct: 166  RDTLTLKEVYDALHVKEKMKKMVPSEGSNSQAEGLIVWGRQ-----QEKNTKNQSRDKSS 220

Query: 355  KFKIGRNQ-------CSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXX 513
                GR++       C  CK+ G+   EC +  +  K+  + +     + EG        
Sbjct: 221  SSYRGRSKSRGRYKSCKYCKRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDE 280

Query: 514  XXXXXXXXXXXXXXX----WVSDSEATCHLCPMKEFF-TGLVERVYDVFMRNDSTSQVHG 678
                               W+ ++    H+CP +++F T    +V  V M +D+  +V G
Sbjct: 281  KSDAELLVAYAGCAQTSDQWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAG 340

Query: 679  TGTIHIRTHDGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMK 858
             GT+ I+  DG +R L +VR+IP L+ ++IS+ TL  +G K +     L+VT+GS +VMK
Sbjct: 341  IGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMK 400

Query: 859  G-VQVRNLYYL----VCSTMTEARKPLVEDDHTRLWHWRLGYATMDSLLRLSRRECIECA 1023
              ++  NLY+L    +   +      L   D T LWH RLG+ T   L  LS+R  ++  
Sbjct: 401  ADIKSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQ 460

Query: 1024 TC-RQDICEHFAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
            +  +   CEH  + K K VKF+T  H    +LD VH  + GP++  S  G
Sbjct: 461  SIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGG 510



 Score = 95.1 bits (235), Expect(2) = 6e-50
 Identities = 68/183 (37%), Positives = 95/183 (51%), Gaps = 11/183 (6%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            VD++SR +    +KH+ QA  VF +WK +VE QT R+V  L +    E     F   C  
Sbjct: 518  VDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKS 577

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R Y+       Q + VAE + R +  K   ++S++G       EA++ ACY+ NR 
Sbjct: 578  EGIVRHYTVPHTP--QQNGVAERMNRTIISKARCLLSNAGLPKQFWAEAVSTACYLINRS 635

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIRI------KGVLGY 1693
            PS AI  K P+E+ S  + ++Y  LRVFGC   AH   G  E   I+        GV GY
Sbjct: 636  PSYAIDKKTPIEVWSG-SPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIFLGYPSGVKGY 694

Query: 1694 KLW 1702
            KLW
Sbjct: 695  KLW 697


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1373

 Score =  144 bits (363), Expect(2) = 1e-49
 Identities = 107/346 (30%), Positives = 166/346 (47%), Gaps = 17/346 (4%)
 Frame = +1

Query: 181  RSTLGYSEVTAALVNFELRR---KEESLNASNGEAFIVRGRGSERQGQENQS*SKSRDRP 351
            R  L   EV  AL N E  +   + +  ++S GEA  VRGR   R   E     K+ DR 
Sbjct: 164  RDELTLKEVYDALQNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNE-----KNYDRR 218

Query: 352  GKFKI----GRNQCSLCKKRGNCRHECAEREETKKKKSQPMQANIMQREGNXXXXXXXXX 519
            G+ K      +  C  CK + +   EC + +  ++K  +  + ++     +         
Sbjct: 219  GRSKSKPPGNKKFCVYCKLKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLV 278

Query: 520  XXXXXXXXXXXXXWVSDSEATCHLCPMKEFFTGL--VERVYDVFMRNDSTSQVHGTGTIH 693
                         W+ DS  + H+C  + +F+    V++   V M +D+   + G G++ 
Sbjct: 279  VFAGCVAGHDE--WILDSACSFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQ 336

Query: 694  IRTHDGMVRKLQNVRYIPGLRVNIISIGTLTVEGLKVTIERNSLRVTEGSRIVMKG-VQV 870
            I+T DGM R L+NVRYIPG+  N+IS+ TL  EG K +     L+V++GS + +KG V  
Sbjct: 337  IKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNS 396

Query: 871  RNLYYLVCSTMT---EARKPLVEDD--HTRLWHWRLGYATMDSLLRLSRRECIE-CATCR 1032
              LY L   T+T    A   +  D+   T LWH RLG+ +   +  L +R  ++ C + +
Sbjct: 397  AKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLGHMSHLGMTELMKRNLLKGCTSSK 456

Query: 1033 QDICEHFAWDK-KGVKFSTFIHQPVRLLDVVHMHIQGPSKVASLEG 1167
               CEH  + K K V+F+T +H     LD VH  + GPSK  SL G
Sbjct: 457  IKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWGPSKKPSLGG 502



 Score = 85.1 bits (209), Expect(2) = 1e-49
 Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 11/184 (5%)
 Frame = +2

Query: 1187 VDEHSRFM*VAIMKHRNQAKRVFIKWKRLVELQTGRRV*ELHSREPSE---DPF*ELCLE 1357
            +D++SR +    +KH++     F  WK ++E QT R+V  L +    E     F + C +
Sbjct: 510  IDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTDNGGEFCSHAFNDYCRQ 569

Query: 1358 QGIRRCYSSQGAKGIQLDDVAESIGRVLFKKVHYMMSSSGADAAL*TEALTYACYITNRL 1537
            +GI R ++       Q + VAE + R +  +   M+S +  +     EA + ACY+ NR 
Sbjct: 570  EGIVRHHTIPHTP--QQNGVAERMNRTIISRARCMLSHARMNKRFWAEAASTACYLINRS 627

Query: 1538 PSAAIKGKIPLEISSSKATSDYGSLRVFGCP--AHEKTGSKEFVFIRI------KGVLGY 1693
            PS  +  K P+E+ S    +DY  L+VFGC   AH   G  E   ++        GV GY
Sbjct: 628  PSIPLNKKTPIEVWSG-TPADYSQLKVFGCTAYAHVDNGKLEPRAVKCLFLGYGSGVKGY 686

Query: 1694 KLWD 1705
            KLW+
Sbjct: 687  KLWN 690