BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00015786
         (3005 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   274   4e-75
emb|CDP17738.1| unnamed protein product [Coffea canephora]            267   1e-72
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   269   5e-72
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   263   1e-68
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   263   1e-68
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          251   1e-66
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711...   250   6e-65
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     246   2e-63
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-...   244   7e-63
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc...   244   9e-63
emb|CAJ86192.1| H0306F03.15 [Oryza sativa]                            242   1e-62
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc...   243   1e-62
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc...   243   2e-62
emb|CAJ86151.1| H0413E07.4 [Oryza sativa]                             242   3e-62
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ...   241   7e-62
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]                        241   9e-62
gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subc...   239   1e-61
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group...   240   1e-61
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            239   4e-61
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   239   5e-61

>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  274 bits (701), Expect = 4e-75
 Identities = 187/511 (36%), Positives = 278/511 (54%), Gaps = 37/511 (7%)
 Frame = -1

Query: 2990 KKESQRSQANVAR-QDDNDSDFSLSI-LSGAGDSDESGWILDSGATCHICSTKKYFTSFV 2817
            KKE     ANVA  + D +SD SL + LS +   DE  WILDSG T H+C  + +F  F 
Sbjct: 188  KKEKVPQDANVAECKSDVESDISLIVSLSASSYPDE--WILDSGCTYHMCPIRDWFFEFQ 245

Query: 2816 EWHDEVS-MGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLK 2640
            E    V  MGN++    +G G++ ++ HDG  R L DVRY+P  + N+IS+G L S GL 
Sbjct: 246  ELDGGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLV 305

Query: 2639 VITEKDSLRVMKGSMIIMIDIQVRNLYYLEGSAVT----QARELSVEDHHT-RLWHWRLD 2475
            V      L+   G+++++  +   NLYY +GS V      A   S +D    +LWH RL 
Sbjct: 306  VTMRDGILKATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLG 365

Query: 2474 HATMNSLLGLSRRECIKGA-ICRHDICEHCAWDKG--VKFGTFIHQPVGLLDVVHMHIQG 2304
            HA   SL  L+++  +KG   C+ + CEHC   K   VKFGT IH   G+LD VH  + G
Sbjct: 366  HAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWG 425

Query: 2303 PSKVTSVEGNNYCL-----FC**THQIYVGSYYKAQISSQGVFIKWKKVVELQTGRRIRK 2139
            P+K  S+ G +Y +     F   + +++V +  K +     +F+KWK  VE  TGR+I+ 
Sbjct: 426  PAKTPSIGGRHYFVTFVDDF---SRRVWVFTM-KNKNDVLEIFLKWKAEVENHTGRKIKV 481

Query: 2138 L---HDGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSR 1968
            L   + G    +P   +C   GI R ++ +  KT Q + V+E M   L+ KV  M+S++ 
Sbjct: 482  LQTDNGGEYKSDPFLNVCQDCGIVRHFTVR--KTPQQNGVSERMNKTLVEKVCCMLSNAE 539

Query: 1967 ADKDLLTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPAHEKT---- 1800
              ++   E +TYA +++NRLPS+AI+GK P EVWSGK A+DY SL VFG  A+       
Sbjct: 540  LGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYDSLHVFGSIAYYHVIESK 599

Query: 1799 ---GSKEFLFVGIK-GVLGYKFWDPKSRNITLSRCIVFDEASLWKQSSLAQEES--GQTG 1638
                +K+ LF+G   GV GY+ W  + +   +SR + FDE+ + K+ +    +S   Q  
Sbjct: 600  LDPRAKKALFMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVMLKKVNPEGTDSTPQQVE 659

Query: 1637 MISQQVEFD--------ITPRESDITPQESD 1569
             + +QVEF+         T  +S +  +ESD
Sbjct: 660  CVRKQVEFEPTVVIPTRNTTSDSPMAEEESD 690


>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  267 bits (682), Expect = 1e-72
 Identities = 179/508 (35%), Positives = 282/508 (55%), Gaps = 37/508 (7%)
 Frame = -1

Query: 2996 ELKKESQRSQ-ANVAR-QDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTS 2823
            +LKK+ +  Q  NVA  + D +SDFSL++       DE  WILDS  T H+   +++F  
Sbjct: 271  KLKKKGKAPQDVNVAECKSDAESDFSLAVSRLTSHPDE--WILDSTCTYHMTPMREWFFE 328

Query: 2822 FVEWHDE-VSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGG 2646
            F E     V MGN++    +G G++ ++ HDG  R L DVRY+P  + ++IS+G L S G
Sbjct: 329  FEELDGGFVYMGNDNPCKTVGIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKG 388

Query: 2645 LKVITEKDSLRVMKGSMIIMIDIQVRNLYYLEGS------AVTQARELSVEDHHTRLWHW 2484
            L+V      L+V  G+++++  ++  NLYY +GS      AV  +     +   T+LWH 
Sbjct: 389  LEVRMRDGILKVTSGALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHM 448

Query: 2483 RLDHATMNSLLGLSRRECIKGA-ICRHDICEHCAWDKG--VKFGTFIHQPVGLLDVVHMH 2313
            RL  A   SL  L+++  +KG  +C+ + CEHC  +K   VKFGT IH   G+LD VH  
Sbjct: 449  RLGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSD 508

Query: 2312 IQGPSKVTSVEGNNYCL-----FC**THQIYVGSYYKAQISSQGVFIKWKKVVELQTGRR 2148
            + GP+K  S+ G  Y +     F   + +++V +  K++     +F+KWK  VE QTGR+
Sbjct: 509  VWGPAKTPSLGGRYYFVTFIDDF---SRRVWVFTM-KSKDEMLKIFLKWKARVENQTGRK 564

Query: 2147 IRKL---HDGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMS 1977
            I+ L   + G    +P +++C + GI R +  +  K  Q + V+E M   L+ KV+ M+S
Sbjct: 565  IKILRTDNGGEYKSDPFQKICQECGIVRHFIVR--KIPQQNGVSEHMNKTLVEKVRCMLS 622

Query: 1976 SSRADKDLLTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPAHEKTG 1797
            ++   +    E +TYA +++NRLPS+AI GK P EVWSGK A+DY SLR+F   A+    
Sbjct: 623  NAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTAYYHVN 682

Query: 1796 -------SKEFLFVGIK-GVLGYKFWDPKSRNITLSRCIVFDEASLWKQSSLAQEESGQT 1641
                   +K+ LF+G   GV GY+ W  +++   +SR + FDE+ +  + +    + G +
Sbjct: 683  ESKLDPRAKKALFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVMLNKIT----QDGTS 738

Query: 1640 GMISQ------QVEFD---ITPRESDIT 1584
            G   Q      QVEF+   ++P  S I+
Sbjct: 739  GTPQQVECTPKQVEFEQIVVSPANSTIS 766


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  269 bits (688), Expect = 5e-72
 Identities = 172/503 (34%), Positives = 271/503 (53%), Gaps = 27/503 (5%)
 Frame = -1

Query: 2996 ELKKESQR---SQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFT 2826
            +LK + Q    + +NVA   D DSD SL++      S  S W+LDSG + H+C  +++F 
Sbjct: 35   KLKNKGQSKTVADSNVAEYVD-DSDCSLAV--SGSTSSSSAWLLDSGCSNHMCPNREWFY 91

Query: 2825 SFVEWHDEVSM-GNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSG 2649
             F E  + V    N+      G G++ ++  DG +R L DVR++P    N+IS+G L   
Sbjct: 92   DFRELEEGVVYTANDVPLTTHGIGSIRLKNRDGAIRTLKDVRFVPSLSRNLISVGALEEK 151

Query: 2648 GLKVITEKDSLRVMKGSMIIMIDIQVRN-LYYLEGSAVTQARELSVEDHH----TRLWHW 2484
            G  V  E   ++++ G++++M  ++  N LYY +G+ +     ++  D       +LWH 
Sbjct: 152  GFTVHAEGGVMKIISGALVVMKGVRKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHM 211

Query: 2483 RLDHATMNSLLGLSRRECIKGA-ICRHDICEHCAWDKG--VKFGTFIHQPVGLLDVVHMH 2313
            RL HA   SL  L ++  +K    C+ D CEHC   K   VKFGT IH   G+LD VH  
Sbjct: 212  RLGHAGERSLNLLMKQGLLKNIQACKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSD 271

Query: 2312 IQGPSKVTSVEGNNYCLFC**THQIYVGSY-YKAQISSQGVFIKWKKVVELQTGRRIRKL 2136
            + GPSK  S+ GN+Y +         +  Y  K +    G+F+KWKK +E QTGR+I+  
Sbjct: 272  VWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHF 331

Query: 2135 ---HDGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRA 1965
               + G  + +P ++ C + GI R ++ +   T Q + V E M   L+ KV+ M+S++  
Sbjct: 332  RTDNGGEYTSDPFKKACEESGIVRHFTVKH--TPQQNGVAERMNRTLLEKVRCMLSNAGL 389

Query: 1964 DKDLLTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPA--HEKTG-- 1797
             K    E + YA ++INRLPS+AI GK P E W GK A+DY SL VFGC A  H K    
Sbjct: 390  GKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYDSLHVFGCTAYYHVKESKL 449

Query: 1796 ---SKEFLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQSSLAQEESGQTGMIS 1629
               +K+ +F+GI  GV GY+ W  +++   +SR + FDE+++  + +  Q+++G    + 
Sbjct: 450  DPRAKKAIFMGIASGVKGYRLWCLETKKTIISRDVTFDESTMLGKVTTEQKKNGTPKQVE 509

Query: 1628 QQVEFDITPRESDITP---QESD 1569
             + +      + + TP   +ESD
Sbjct: 510  FERKIVFPANDEEKTPMVDEESD 532


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  263 bits (671), Expect = 1e-68
 Identities = 184/526 (34%), Positives = 270/526 (51%), Gaps = 35/526 (6%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESG-WILDSGATCHICSTKKYFTSFVE 2814
            K ESQ  Q + A   D DS     I+    DS   G WILD+GAT HI ++K  F+++ +
Sbjct: 772  KSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFHISTSKDAFSTYEK 831

Query: 2813 WHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVI 2634
                V MGN+    V+G GTV I+M DG+VR L DVR+IP  + N+IS+ TL   G +  
Sbjct: 832  HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYS 891

Query: 2633 TEKDSLRVMKGSMIIMIDIQVRNLYYLEGSAVTQARELSVED----HHTRLWHWRLDHAT 2466
             E   L+V  G++ ++     R LY+L+GS+VT    +S  D      T+LWH RL H +
Sbjct: 892  AEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMS 951

Query: 2465 MNSLLGLSRRECIKGAIC-RHDICEHCAWDK--GVKFGTFIHQPVGLLDVVHMHIQGPSK 2295
               L  LS+R  + G    + + CEHC + K   VKF T IH+  G +D  H  + GPS 
Sbjct: 952  ERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSP 1011

Query: 2294 VTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLHDGMPS 2118
              S  G  Y L     +   V  Y+ K++      F ++K ++E QTG++I++       
Sbjct: 1012 TISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGL 1071

Query: 2117 E---NPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLLT 1947
            E       E C  +GI R  + +R  T Q + V E M   L+ + + M S++   ++   
Sbjct: 1072 EFCSGEFNEFCKNEGIVRHRTVRR--TPQQNGVAERMNRTLLERARCMRSNAGLGEEFWA 1129

Query: 1946 EILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPAHE-------KTGSKE 1788
            E +  ACY++NR PS AIE K P EVWSG  A DY  LRVFGCPA+        K  +K+
Sbjct: 1130 EAVNTACYLVNRSPSTAIELKTPEEVWSGSPA-DYSGLRVFGCPAYAHVNEGKLKPRAKK 1188

Query: 1787 FLFVGI-KGVLGYKFW--DPKSRNITLSRCIVFDEASLWKQ--SSLAQEESGQTG--MIS 1629
             +F+G  +GV GY+ W  DP S    +SR + FDE+S+ +   +S  +EES + G   + 
Sbjct: 1189 CIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKEESDRMGDHGVE 1248

Query: 1628 QQVEFDI---------TPRESDITPQESDXXXXXXXXXXXTQQGRT 1518
            +QVE  +         + ++  +  Q+SD              GRT
Sbjct: 1249 KQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQEKPYSIATGRT 1294


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  263 bits (671), Expect = 1e-68
 Identities = 184/526 (34%), Positives = 270/526 (51%), Gaps = 35/526 (6%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESG-WILDSGATCHICSTKKYFTSFVE 2814
            K ESQ  Q + A   D DS     I+    DS   G WILD+GAT HI ++K  F+++ +
Sbjct: 751  KSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGGRWILDTGATFHISTSKDAFSTYEK 810

Query: 2813 WHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVI 2634
                V MGN+    V+G GTV I+M DG+VR L DVR+IP  + N+IS+ TL   G +  
Sbjct: 811  HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYS 870

Query: 2633 TEKDSLRVMKGSMIIMIDIQVRNLYYLEGSAVTQARELSVED----HHTRLWHWRLDHAT 2466
             E   L+V  G++ ++     R LY+L+GS+VT    +S  D      T+LWH RL H +
Sbjct: 871  AEGGVLKVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMS 930

Query: 2465 MNSLLGLSRRECIKGAIC-RHDICEHCAWDK--GVKFGTFIHQPVGLLDVVHMHIQGPSK 2295
               L  LS+R  + G    + + CEHC + K   VKF T IH+  G +D  H  + GPS 
Sbjct: 931  ERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSP 990

Query: 2294 VTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLHDGMPS 2118
              S  G  Y L     +   V  Y+ K++      F ++K ++E QTG++I++       
Sbjct: 991  TISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNGL 1050

Query: 2117 E---NPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLLT 1947
            E       E C  +GI R  + +R  T Q + V E M   L+ + + M S++   ++   
Sbjct: 1051 EFCSGEFNEFCKNEGIVRHRTVRR--TPQQNGVAERMNRTLLERARCMRSNAGLGEEFWA 1108

Query: 1946 EILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPAHE-------KTGSKE 1788
            E +  ACY++NR PS AIE K P EVWSG  A DY  LRVFGCPA+        K  +K+
Sbjct: 1109 EAVNTACYLVNRSPSTAIELKTPEEVWSGSPA-DYSGLRVFGCPAYAHVNEGKLKPRAKK 1167

Query: 1787 FLFVGI-KGVLGYKFW--DPKSRNITLSRCIVFDEASLWKQ--SSLAQEESGQTG--MIS 1629
             +F+G  +GV GY+ W  DP S    +SR + FDE+S+ +   +S  +EES + G   + 
Sbjct: 1168 CIFLGYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKEESDRMGDHGVE 1227

Query: 1628 QQVEFDI---------TPRESDITPQESDXXXXXXXXXXXTQQGRT 1518
            +QVE  +         + ++  +  Q+SD              GRT
Sbjct: 1228 KQVECQVDAPIPTEGTSVQDDQVEVQDSDEDESPQEKPYSIATGRT 1273


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  251 bits (642), Expect = 1e-66
 Identities = 167/493 (33%), Positives = 259/493 (52%), Gaps = 28/493 (5%)
 Frame = -1

Query: 2987 KESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSFVEWH 2808
            K+   + AN+   DD+ S+  +  +S +  +D   WILDSG + H+   +++FT+F    
Sbjct: 176  KQGSSTSANLVHTDDSCSEGDILCVSSSKCTD--AWILDSGCSYHMTPNREWFTTFRSGS 233

Query: 2807 -DEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVIT 2631
               V +G++    + G G + I M DG VR L +VRYIP  R N+IS+GTL   G    +
Sbjct: 234  FGFVYLGDDKACAITGIGQIKIAMDDGGVRTLTNVRYIPELRKNLISLGTLQENGYSYRS 293

Query: 2630 EKDS--LRVMKGSMIIM-IDIQVRNLYYLEGSAVT-QARELSVEDHHTRLWHWRLDHATM 2463
            ++D   L+V KG++ +M +     N+Y L G+ V      +  ++  T+LWH RL H + 
Sbjct: 294  DRDRDILKVSKGALTVMRVKRTAGNIYKLLGNTVVGDVASVESDNDATKLWHLRLGHLSE 353

Query: 2462 NSLLGLSRRECIKGAI-CRHDICEHCAWDKG--VKFGTFIHQPVGLLDVVHMHIQGPSKV 2292
              ++ L +R  +KG   C+ D+C++C   K   V+F    H+  G+LD VH  + GP++ 
Sbjct: 354  RGMMELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRFKPMKHKTEGILDYVHSDVWGPTRE 413

Query: 2291 TSVEGNNYCLFC**THQIYVGSYYKAQISSQGVFIK---WKKVVELQTGRRIRKLHDGMP 2121
             S+ G+ Y +         +  Y+  Q S   VF K   WK  VE QTGR+I+ L     
Sbjct: 414  ASMGGSRYFVTFTDDFSRKLWVYFMKQKSE--VFSKFKLWKAEVENQTGRKIKYLRSDNG 471

Query: 2120 SE---NPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLL 1950
            +E   +   + C + GI+R +S +  KT Q + V E M   L  + + +   +   K   
Sbjct: 472  TEYTNSQFEKFCEQHGIQRHFSVR--KTPQQNGVAERMNMSLTERARCLQLKAGLSKGFW 529

Query: 1949 TEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPAHEKTG--------- 1797
             E +  ACY+INR P A++EGK+  EVW+GK   D  +LR+FGCP               
Sbjct: 530  AETINMACYLINRSPRASLEGKVAEEVWTGKPI-DLDNLRIFGCPTFVHISSEDRSKLDP 588

Query: 1796 -SKEFLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS---SLAQEESGQTGMI 1632
             SK+ +FVG  KGV G+K WDP S+ + LSR +VFDE  + KQS    + +   G +G  
Sbjct: 589  KSKKCIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFMLKQSRETEVTESAGGSSGKE 648

Query: 1631 SQQVEFDITPRES 1593
              QVE + TP ++
Sbjct: 649  VIQVELEPTPNKN 661


>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
 gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
          Length = 1307

 Score =  250 bits (639), Expect = 6e-65
 Identities = 161/496 (32%), Positives = 267/496 (53%), Gaps = 22/496 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVA-RQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSFVE 2814
            KK+S++   + A  ++D +S+  +++++         W+LDSGA+ HIC  +++FT++ +
Sbjct: 242  KKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSGASYHICPRREWFTTYEQ 301

Query: 2813 WHD-EVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
                 +SM N S   V+GTG++ I+ HDG    L +VR++P    N+IS+  L S G   
Sbjct: 302  VDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISLSLLDSKGFSW 361

Query: 2636 ITEKDSLRVMKGSMIIMIDIQVRNLYYLEGSAVTQARELSVEDHH----TRLWHWRLDHA 2469
              +   LRV KGS +I+  +    LY+L+GS VT +  ++  + H    T+LWH RL H 
Sbjct: 362  SGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDMTKLWHIRLGHM 421

Query: 2468 TMNSLLGLSRRECIKG-AICRHDICEHCAWDK--GVKFGTFIHQPVGLLDVVHMHIQGPS 2298
                +  LS+ + + G  +   + CEHC + K    KF   IH+  G LD +H    GP 
Sbjct: 422  GERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTLDYIHSDCWGPC 481

Query: 2297 KVTSVEGNNYCLFC**THQIYVGSY-YKAQISSQGVFIKWKKVVELQTGRRIRKLHDGMP 2121
            +V S+ G  + +     +      Y  K +  +   F +WK ++E QTG++I++L     
Sbjct: 482  RVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTGKKIKRLRTDNG 541

Query: 2120 SE---NPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLL 1950
             E   +   + C  +GI R  + +   T Q + V E M   L+ + + M+S++  D+   
Sbjct: 542  LEFCWSEFDQFCKDEGIARHRTVR--NTPQQNGVAERMNQTLLERARCMLSNAGLDRRFW 599

Query: 1949 TEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPA--HEKTG-----SK 1791
             E ++ ACY+INR P   I+ K P E+WSGK A+DY +L+ FGC A  H   G     +K
Sbjct: 600  AEAVSTACYLINRGPHTGIQCKTPMEMWSGK-AADYSNLKAFGCTAYYHVSEGKLEPRAK 658

Query: 1790 EFLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQSSLAQEESGQTGMISQQVEF 1614
            + +FVG   GV G++ W P  + + +SR +VFDE+ L + + +    + +TG + +QVEF
Sbjct: 659  KGVFVGYGDGVKGFRIWSPAEKRVIMSRNVVFDESPLLR-TIVKPTTTSETGSLDKQVEF 717

Query: 1613 DITPRESDI-TPQESD 1569
             +   ESD+  P+E D
Sbjct: 718  QVIQNESDLKEPEEED 733


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  246 bits (627), Expect = 2e-63
 Identities = 171/493 (34%), Positives = 258/493 (52%), Gaps = 26/493 (5%)
 Frame = -1

Query: 2987 KESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSFVEWH 2808
            K+ +  +A V   + +D++  ++    A  SD+  WILD+  T H+C  + +F ++    
Sbjct: 176  KKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQ--WILDTACTYHMCPNRDWFATYEAVQ 233

Query: 2807 D-EVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVIT 2631
               V MG+++   V G GTV I+M DG +R L DVR+IP  + ++IS+ TL   G K   
Sbjct: 234  GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSG 293

Query: 2630 EKDSLRVMKGSMIIM-IDIQVRNLYYLEGSAV-----TQARELSVEDHHTRLWHWRLDHA 2469
                L+V KGS+++M  DI+  NLY+L G+ +       +  LS  D  T LWH RL H 
Sbjct: 294  GDGILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHM 352

Query: 2468 TMNSLLGLSRRECIKG-AICRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGPS 2298
            +   L  LS+R  + G +I +   CEHC +   K VKF T  H   G+LD VH  + GP+
Sbjct: 353  SEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 412

Query: 2297 KVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLH--DG 2127
            + TS  G  Y +     +   V  Y+ K +  +  VF +WK +VE QT R+++ L   +G
Sbjct: 413  RKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 472

Query: 2126 MPSENPV-RELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLL 1950
            M   + + +  C  +GI R Y+     T Q + V E M   +I K + M+S++   K   
Sbjct: 473  MELCSKIFKSYCKSEGIVRHYTVPH--TPQQNGVAERMNRTIISKARCMLSNASLPKQFW 530

Query: 1949 TEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE---- 1788
             E ++ ACY+INR PS AI+ K P EVWSG  A +Y  LRVFGC   AH   G  E    
Sbjct: 531  AEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRVI 589

Query: 1787 -FLFVG-IKGVLGYKFWDPKSRNITLSRCIVFDEASLWKQSSLAQEESGQTGMISQQVEF 1614
              +F+G + GV GYK W P+++ + +SR +VF E+ +                +S QVE 
Sbjct: 590  KCIFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEH 649

Query: 1613 DIT----PRESDI 1587
             I+    P + D+
Sbjct: 650  LISSGHAPEKEDV 662


>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1373

 Score =  244 bits (623), Expect = 7e-63
 Identities = 162/463 (34%), Positives = 241/463 (52%), Gaps = 23/463 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            KK+ + S A+ A  DD+  D  +         DE  WILDS  + HIC+ + +F+S+  V
Sbjct: 256  KKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE--WILDSACSFHICTKRNWFSSYKPV 313

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MG+++   ++G G+V I+  DGM R L +VRYIPG   N+IS+ TL + G K 
Sbjct: 314  QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKY 373

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLEGSAVTQARELSV-----EDHHTRLWHWRLD 2475
                  L+V KGS++ +  D+    LY L G  +T +   +      E   T LWH RL 
Sbjct: 374  SGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLTGSDSAAAAITNDEPSKTNLWHMRLG 433

Query: 2474 HATMNSLLGLSRRECIKGAI-CRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQG 2304
            H +   +  L +R  +KG    +   CEHC +   K V+F T +H   G LD VH  + G
Sbjct: 434  HMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWG 493

Query: 2303 PSKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKL--- 2136
            PSK  S+ G  Y L     +   V  Y+ K +  +   F  WK ++E QT R+++ L   
Sbjct: 494  PSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTD 553

Query: 2135 HDGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKD 1956
            + G    +   + C ++GI R ++     T Q + V E M   +I + + M+S +R +K 
Sbjct: 554  NGGEFCSHAFNDYCRQEGIVRHHTIPH--TPQQNGVAERMNRTIISRARCMLSHARMNKR 611

Query: 1955 LLTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE-- 1788
               E  + ACY+INR PS  +  K P EVWSG T +DY  L+VFGC   AH   G  E  
Sbjct: 612  FWAEAASTACYLINRSPSIPLNKKTPIEVWSG-TPADYSQLKVFGCTAYAHVDNGKLEPR 670

Query: 1787 ---FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
                LF+G   GV GYK W+P++    +SR +VF+E+ ++  S
Sbjct: 671  AVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNS 713


>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  244 bits (622), Expect = 9e-63
 Identities = 163/463 (35%), Positives = 241/463 (52%), Gaps = 23/463 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            KK+ + S A+ A  DD+  D  +         DE  WILDS  + HIC+ + +F+S+  V
Sbjct: 256  KKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE--WILDSACSFHICTKRNWFSSYKPV 313

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MG+++   ++G G+V I+  DGM R L +VRYIPG   N+IS+ TL + G K 
Sbjct: 314  QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKY 373

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLEGSAVT-----QARELSVEDHHTRLWHWRLD 2475
                  L+V KGS++ +  D+    LY L G  +T      A   + E   T LWH RL 
Sbjct: 374  SGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLG 433

Query: 2474 HATMNSLLGLSRRECIKGAI-CRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQG 2304
            H +   +  L +R  +KG    +   CEHC +   K V+F T +H   G LD VH  + G
Sbjct: 434  HMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWG 493

Query: 2303 PSKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKL--- 2136
            PSK  S+ G  Y L     +   V  Y+ K +  +   F  WK ++E QT R+++ L   
Sbjct: 494  PSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTD 553

Query: 2135 HDGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKD 1956
            + G    +   + C ++GI R ++     T Q + V E M   +I + + M+S +R +K 
Sbjct: 554  NGGEFCSHAFNDYCRQEGIVRHHTIPH--TPQQNGVAERMNRTIISRARCMLSHARMNKR 611

Query: 1955 LLTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE-- 1788
               E  + ACY+INR PS  +  K P EVWSG T +DY  L+VFGC   AH   G  E  
Sbjct: 612  FWAEAASTACYLINRSPSIPLNKKTPIEVWSG-TPADYSQLKVFGCTAYAHVDNGKLEPR 670

Query: 1787 ---FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
                LF+G   GV GYK W+P++    +SR +VF+E+ ++  S
Sbjct: 671  AVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNS 713


>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
          Length = 1037

 Score =  242 bits (617), Expect = 1e-62
 Identities = 168/480 (35%), Positives = 255/480 (53%), Gaps = 24/480 (5%)
 Frame = -1

Query: 2987 KESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF-VEW 2811
            K+    +A V   + +D++  ++    A  SD+  WILD+  T H+C  + +F ++ V  
Sbjct: 84   KKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQ--WILDTACTYHMCPNRDWFATYEVVQ 141

Query: 2810 HDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVIT 2631
               V MG+++   V G GTV I+M DG +R L DVR+IP  + ++IS+ TL   G K   
Sbjct: 142  GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSG 201

Query: 2630 EKDSLRVMKGSMIIM-IDIQVRNLYYLEGSAV-----TQARELSVEDHHTRLWHWRLDHA 2469
                L+V KGS+++M  DI+  NLY+L+G+ +     T +  LS  D  T LWH RL H 
Sbjct: 202  GDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSD-ATNLWHMRLGHM 260

Query: 2468 TMNSLLGLSRRECIKG-AICRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGPS 2298
            +   L  LS R  + G +I +   CEHC +   K VKF T  H   G+LD VH  + GP+
Sbjct: 261  SEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 320

Query: 2297 KVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLH--DG 2127
            + TS  G  Y +     +   V  Y+ K +  +  VF +WK +VE QT R+++ L   +G
Sbjct: 321  RKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNG 380

Query: 2126 MPSENPV-RELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLL 1950
            M   + + +  C  +GI R Y+     T Q + V E M   +I K + M+S++   K   
Sbjct: 381  MEFCSKIFKSYCKSEGIMRHYTVPH--TPQQNGVAERMNRTIISKARCMLSNAGLPKQFW 438

Query: 1949 TEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE---- 1788
             E ++ ACY+INR P  AI+ K P +VWSG  A +Y  L+VFGC   AH   G  E    
Sbjct: 439  AEAVSTACYLINRSPGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTI 497

Query: 1787 -FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLW--KQSSLAQEESGQTGMISQQV 1620
              +F+G   GV GYK W P+++ + +SR +VF E+ +   K S+    ES +   +  Q+
Sbjct: 498  KCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASVQIQI 557


>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1278

 Score =  243 bits (620), Expect = 1e-62
 Identities = 160/462 (34%), Positives = 244/462 (52%), Gaps = 22/462 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            K++S    + V    ++DS   L + +G   S +  WILD+  + HI   + +F+S+  V
Sbjct: 257  KRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDE-WILDTACSFHIYINRDWFSSYKSV 315

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MGN++   ++G G+V I+ HDG+ R L DVR+IPG   N+IS+ TL + G K 
Sbjct: 316  QNGDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKY 375

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLEGS----AVTQARELSVEDHHTRLWHWRLDH 2472
                  ++V KGS++ MI D+   NLY L GS    +VT A     E + T LWH RL H
Sbjct: 376  SGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMRLGH 435

Query: 2471 ATMNSLLGLSRRECIKGAICRH-DICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGP 2301
             +   +  L +R  + G    +   CE C +   K VKF T +H+  G+LD VH  + GP
Sbjct: 436  MSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDYVHADLWGP 495

Query: 2300 SKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLHDGM 2124
            S+  S+ G  Y L     +   V  Y+ K +  +   F +WK ++E QT + ++ L    
Sbjct: 496  SRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKVLRTDN 555

Query: 2123 PSE---NPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDL 1953
              E   +   + C K+GI R ++     T Q + V E M   +I K + M+S++R +K  
Sbjct: 556  AGEFCSDAFDDYCRKEGIVRHHTI--PYTPQQNGVAERMNRTIISKARCMLSNARMNKRF 613

Query: 1952 LTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCPAHEKTGSKEF---- 1785
              E    ACY+INR PS  +  K P E+WSG  A DY  LRVFGC A+    +++     
Sbjct: 614  WAEAANTACYLINRSPSIPLNKKTPIEIWSGMPA-DYSQLRVFGCTAYAHVDNEKLEPRA 672

Query: 1784 ---LFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
               LF+G   GV GYK W+P++    +SR +VF+E+ ++  S
Sbjct: 673  IKCLFLGYGLGVKGYKLWNPETNKTFMSRSVVFNESVMFNDS 714


>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1333

 Score =  243 bits (619), Expect = 2e-62
 Identities = 163/463 (35%), Positives = 240/463 (51%), Gaps = 23/463 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            KK+ + S A+ A  DD+  D  +         DE  WILDS  + HIC+ + +F+S+  V
Sbjct: 256  KKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDE--WILDSACSFHICTKRNWFSSYKPV 313

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MG+++   ++G G+V I+  DGM R L +VRYIPG   N+IS+ TL + G K 
Sbjct: 314  QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKY 373

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLEGSAVT-----QARELSVEDHHTRLWHWRLD 2475
                  L+V KGS++ +  D+    LY L G  +T      A   + E   T LWH RL 
Sbjct: 374  SGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLTGSDSAAAAVTNDEPSKTNLWHMRLG 433

Query: 2474 HATMNSLLGLSRRECIKGAI-CRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQG 2304
            H +   +  L +R  +KG    +   CEHC +   K V+F T +H   G LD VH  + G
Sbjct: 434  HMSHLGMTELMKRNLLKGCTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWG 493

Query: 2303 PSKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKL--- 2136
            PSK  S+ G  Y L     +   V  Y+ K +  +   F  WK ++E QT R+++ L   
Sbjct: 494  PSKKPSLGGARYMLTVIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLRTD 553

Query: 2135 HDGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKD 1956
            + G    +   + C ++GI R ++     T Q + V E M   +I + + M+S +R +K 
Sbjct: 554  NGGEFCSHAFNDYCRQEGIVRHHTIPH--TPQQNGVAERMNRTIISRARCMLSHARMNKR 611

Query: 1955 LLTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE-- 1788
               E  + ACY+INR PS  +  K P EVWSG  A DY  L+VFGC   AH   G  E  
Sbjct: 612  FWAEAASTACYLINRSPSIPLNKKTPIEVWSGMPA-DYSQLKVFGCTAYAHVDNGKLEPR 670

Query: 1787 ---FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
                LF+G   GV GYK W+P++    +SR +VF+E+ ++  S
Sbjct: 671  AVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNS 713


>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
          Length = 1205

 Score =  242 bits (617), Expect = 3e-62
 Identities = 168/480 (35%), Positives = 255/480 (53%), Gaps = 24/480 (5%)
 Frame = -1

Query: 2987 KESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF-VEW 2811
            K+    +A V   + +D++  ++    A  SD+  WILD+  T H+C  + +F ++ V  
Sbjct: 252  KKEDEGKAAVVTDEKSDAELLVAYAGCAQTSDQ--WILDTACTYHMCPNRDWFATYEVVQ 309

Query: 2810 HDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVIT 2631
               V MG+++   V G GTV I+M DG +R L DVR+IP  + ++IS+ TL   G K   
Sbjct: 310  GGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSG 369

Query: 2630 EKDSLRVMKGSMIIM-IDIQVRNLYYLEGSAV-----TQARELSVEDHHTRLWHWRLDHA 2469
                L+V KGS+++M  DI+  NLY+L+G+ +     T +  LS  D  T LWH RL H 
Sbjct: 370  GDGILKVTKGSLVVMKADIKSANLYHLQGTTILGNVATVSDSLSNSD-ATNLWHMRLGHM 428

Query: 2468 TMNSLLGLSRRECIKG-AICRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGPS 2298
            +   L  LS R  + G +I +   CEHC +   K VKF T  H   G+LD VH  + GP+
Sbjct: 429  SEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 488

Query: 2297 KVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLH--DG 2127
            + TS  G  Y +     +   V  Y+ K +  +  VF +WK +VE QT R+++ L   +G
Sbjct: 489  RKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKILRTDNG 548

Query: 2126 MPSENPV-RELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLL 1950
            M   + + +  C  +GI R Y+     T Q + V E M   +I K + M+S++   K   
Sbjct: 549  MEFCSKIFKSYCKSEGIMRHYTVPH--TPQQNGVAERMNRTIISKARCMLSNAGLPKQFW 606

Query: 1949 TEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE---- 1788
             E ++ ACY+INR P  AI+ K P +VWSG  A +Y  L+VFGC   AH   G  E    
Sbjct: 607  AEAVSTACYLINRSPGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTAYAHVDNGKLEPRTI 665

Query: 1787 -FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLW--KQSSLAQEESGQTGMISQQV 1620
              +F+G   GV GYK W P+++ + +SR +VF E+ +   K S+    ES +   +  Q+
Sbjct: 666  KCIFLGYPSGVKGYKLWCPETKKVVISRYVVFHESVMLHDKPSTNIPVESQEKASVQIQI 725


>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1326

 Score =  241 bits (615), Expect = 7e-62
 Identities = 162/462 (35%), Positives = 243/462 (52%), Gaps = 22/462 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            K++S    + V   +++DS   L + +G   S +  WILD+  + HIC  + +F+S+  V
Sbjct: 257  KRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDE-WILDTACSFHICINRDWFSSYKSV 315

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MG+++   ++G G+V I+ HDGM R L DVR+IPG   N+IS+ TL + G K 
Sbjct: 316  QNGDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKY 375

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLEGS----AVTQARELSVEDHHTRLWHWRLDH 2472
             +    ++V KGS++ MI D+   NLY L GS    +VT A     E   T LWH RL H
Sbjct: 376  SSSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMRLGH 435

Query: 2471 ATMNSLLGLSRRECIKGAI-CRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGP 2301
             +   +  L +R  + G    +   CEHC +   K VKF T +H+  G+LD VH  + GP
Sbjct: 436  MSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHTDLWGP 495

Query: 2300 SKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKL---H 2133
            S+   + G  Y L     +   V  Y+ K +  +   F +WK  +E QT + ++ L   +
Sbjct: 496  SRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKVLRTDN 555

Query: 2132 DGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDL 1953
             G    +   + C K+GI R ++     T Q + V E M   +I K + M+S++R +K  
Sbjct: 556  GGEFCSDAFDDYCRKEGIVRHHTI--PYTPQQNGVAERMNRTIISKARCMLSNARMNKRF 613

Query: 1952 LTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE--- 1788
              E    ACY+INR PS  +  K P EVWSG  A DY  LRVFGC   AH   G  E   
Sbjct: 614  WAEAANTACYLINRSPSIPLNKKTPIEVWSGMPA-DYSQLRVFGCTAYAHVDNGKLEPRA 672

Query: 1787 --FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
               LF+G   GV  YK W+P++    + R +VF+++ ++  S
Sbjct: 673  IKCLFLGYGSGVKRYKLWNPETNKTFMRRSVVFNKSVMFNDS 714


>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
          Length = 1335

 Score =  241 bits (614), Expect = 9e-62
 Identities = 163/463 (35%), Positives = 240/463 (51%), Gaps = 23/463 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            KK+ + S A+ A  DD+  D  +         DE  WILDS  + HIC+ + +F+S+  V
Sbjct: 258  KKDGKVSVASAAVSDDDSGDCLVVFAGCVAGHDE--WILDSACSFHICTKRNWFSSYKPV 315

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MG+++   ++G G+V I+  DGM R L +VRYIPG   N+IS+ TL + G K 
Sbjct: 316  QKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGMSRNLISLSTLDAEGYKY 375

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLE-----GSAVTQARELSVEDHHTRLWHWRLD 2475
                  L+V KGS++ +  D+    LY L      GS    A   + E   T LWH RL 
Sbjct: 376  SGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLPGSDSAAAAVTNDEPSKTNLWHMRLG 435

Query: 2474 HATMNSLLGLSRRECIKG-AICRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQG 2304
            H +   +  L +R  +KG    +   CEHC +   K V+F T +H   G LD VH  + G
Sbjct: 436  HMSHLGMTELMKRNLLKGYTSSKIKFCEHCIFGKHKRVQFNTSVHTTKGTLDYVHADLWG 495

Query: 2303 PSKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKL--- 2136
            PSK  S+ G  Y L     +   V  Y+ K +  +   F  WK ++E QT R+++ L   
Sbjct: 496  PSKKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFTAFKNWKVMIERQTERKVKLLCTD 555

Query: 2135 HDGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKD 1956
            + G    +   + C ++GI R ++     T Q + V E M   +I + + M+S +R +K 
Sbjct: 556  NGGEFCSHAFNDYCRQEGIVRHHTIPH--TPQQNGVAERMNRTIISRARCMLSHARMNKR 613

Query: 1955 LLTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE-- 1788
               E  + ACY+INR PS  +  K P EVWSG T +DY  L+VFGC   AH   G  E  
Sbjct: 614  FWAEAASTACYLINRSPSIPLNKKTPIEVWSG-TPADYSQLKVFGCTAYAHVDNGKLEPR 672

Query: 1787 ---FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
                LF+G   GV GYK W+P++    +SR +VF+E+ ++  S
Sbjct: 673  AVKCLFLGYGSGVKGYKLWNPETGKTFMSRSVVFNESVMFTNS 715


>gb|ABA96718.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1131

 Score =  239 bits (611), Expect = 1e-61
 Identities = 163/459 (35%), Positives = 238/459 (51%), Gaps = 19/459 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            K++S    + V   +++DS   L + +G   S +  WILD+  + HIC  + +F+S+  V
Sbjct: 207  KRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDE-WILDTACSFHICINRDWFSSYKSV 265

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MG+++   ++G G+V I+ HDGM R L DVRYIPG   N+IS+ TL + G K 
Sbjct: 266  QNGDVVRMGDDNPHEIVGIGSVQIKTHDGMTRTLKDVRYIPGMARNLISLSTLDAEGYKY 325

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLEGS----AVTQARELSVEDHHTRLWHWRLDH 2472
                  ++V KGS++ MI D+   NLY L GS    +VT A     E   T LWH RL H
Sbjct: 326  SGLGGVVKVSKGSLVYMISDMNSANLYVLRGSTLHGSVTAAAVSKDEPSKTNLWHMRLGH 385

Query: 2471 ATMNSLLGLSRRECIKGAICRH-DICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGP 2301
             +   +  L +R  + G    +   CEHC +   K VKF T +H+  G+LD VH  + GP
Sbjct: 386  MSELGMAELMKRNLLDGYTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGP 445

Query: 2300 SKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLHDGM 2124
            S+  S+ G  Y L     +   V  Y+ K +  +   F +WK ++E QT +         
Sbjct: 446  SRKPSLGGARYMLTIIDDYSTKVWPYFLKHKDDTFATFKEWKVMIERQTEKE-------- 497

Query: 2123 PSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLLTE 1944
                       K+GI R ++     T Q + V E M   +I K + M+S++R +K    E
Sbjct: 498  -----------KEGIVRHHTI--PYTPQQNGVAERMNRTIISKARCMLSNARMNKRFWAE 544

Query: 1943 ILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE-----F 1785
                ACY+IN+ PS  +  K P EVWSG  A DY  LRVFGC   AH   G  E      
Sbjct: 545  AANTACYLINKSPSIPLNKKTPIEVWSGMPA-DYSQLRVFGCTAYAHVDNGKLEPRAIKC 603

Query: 1784 LFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
            LF+G   GV GYK W+P++    +SR +VF+E+ ++  S
Sbjct: 604  LFLGYGSGVKGYKLWNPETNKTFMSRSVVFNESVMFNDS 642


>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
            Group]
 gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1322

 Score =  240 bits (613), Expect = 1e-61
 Identities = 162/462 (35%), Positives = 243/462 (52%), Gaps = 22/462 (4%)
 Frame = -1

Query: 2990 KKESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSF--V 2817
            K++S    + V   +++DS   L + +G   S +  WILD+  + HIC  + +F+S+  V
Sbjct: 257  KRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDE-WILDTACSFHICINRDWFSSYKSV 315

Query: 2816 EWHDEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKV 2637
            +  D V MG+++   ++G G+V I+ HDGM R L DVR+IPG   N+IS+ TL + G K 
Sbjct: 316  QNEDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKY 375

Query: 2636 ITEKDSLRVMKGSMIIMI-DIQVRNLYYLEGS----AVTQARELSVEDHHTRLWHWRLDH 2472
                  ++V KGS++ MI D+   NLY L GS    +VT A     E   T LWH RL H
Sbjct: 376  SGSGGVVKVSKGSLVYMIGDMNSANLYVLRGSTLHGSVTAAAVTKDEPSKTNLWHMRLGH 435

Query: 2471 ATMNSLLGLSRRECIKGAICRH-DICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGP 2301
             +   +  L +R  + G    +   CEHC +   K VKF T +H+  G+LD VH  + GP
Sbjct: 436  MSELGMAELMKRNLLDGCTQGNMKFCEHCVFGKHKRVKFNTSVHRTKGILDYVHADLWGP 495

Query: 2300 SKVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKL---H 2133
            S+  S+ G  Y L     +      Y+ K +  +   F + K ++E QT + ++ L   +
Sbjct: 496  SRKPSLGGARYMLTIIDDYSRKEWPYFLKHKDDTFAAFKERKVMIERQTEKEVKVLCTDN 555

Query: 2132 DGMPSENPVRELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDL 1953
             G    +   + C K+GI R ++     T Q + V E M   +I K + M+S++R +K  
Sbjct: 556  GGEFCSDAFDDYCRKEGIVRHHTI--PYTPQQNGVAERMNRTIISKARCMLSNARMNKRF 613

Query: 1952 LTEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE--- 1788
              E    ACY+INR PS  +  K P E+WSG  A DY  LRVFGC   AH   G  E   
Sbjct: 614  WAEAANTACYLINRSPSIPLNKKTPIEIWSGMPA-DYSQLRVFGCTAYAHVDNGKLEPRA 672

Query: 1787 --FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLWKQS 1671
               LF+G   GV GYK W+P++    +SR ++F+E  ++  S
Sbjct: 673  IKCLFLGYGSGVKGYKLWNPETNKTFMSRNVIFNEFVMFNDS 714


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  239 bits (610), Expect = 4e-61
 Identities = 173/501 (34%), Positives = 263/501 (52%), Gaps = 28/501 (5%)
 Frame = -1

Query: 2987 KESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSFVEWH 2808
            K+ +  +A V   + +D++  ++    A  SD+  WIL++    H+C  + +F ++    
Sbjct: 267  KKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQ--WILNTACIYHMCPNRDWFATYEAVQ 324

Query: 2807 -DEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVIT 2631
               V MG+++   V G GTV I+M DG +R L DVR+IP  + ++IS+ TL   G K   
Sbjct: 325  VGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 384

Query: 2630 EKDSLRVMKGSMIIM-IDIQVRNLYYLEGSAV-----TQARELSVEDHHTRLWHWRLDHA 2469
                L+V KGS+++M  DI+  NLY+L G+ +       +  LS  D  T LWH RL H 
Sbjct: 385  GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHM 443

Query: 2468 TMNSLLGLSRRECIKG-AICRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGPS 2298
            T   L  LS+R  + G +I +   CEHC +   K VKF T  H   G+LD VH  + GP+
Sbjct: 444  TEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 503

Query: 2297 KVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLH--DG 2127
            + TS  G  Y +     +   V  Y+ K +  +  VF +WK +VE QT R+++ L   +G
Sbjct: 504  RKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 563

Query: 2126 MPSENPV-RELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLL 1950
            M   + + +  C  +GI R Y+     T Q + V E M   +I K + ++S++   K   
Sbjct: 564  MEFCSKIFKSYCKSEGIVRHYTVPH--TPQQNGVAERMNRTIISKARCLLSNAGLPKQFW 621

Query: 1949 TEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE---- 1788
             E ++ ACY+INR PS AI+ K P EVWSG  A +Y  LRVFGC   AH   G  E    
Sbjct: 622  AEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAI 680

Query: 1787 -FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLW--KQSSLAQEESGQTGMISQQV 1620
              +F+G   GV GYK W P+++ + +SR +VF E+ +   K S+    ES +    S QV
Sbjct: 681  KCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKA--SVQV 738

Query: 1619 EFDIT----PRESDITPQESD 1569
            E  I+    P + D+   + +
Sbjct: 739  EHLISSGHAPEKEDVAINQDE 759


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  239 bits (610), Expect = 5e-61
 Identities = 173/501 (34%), Positives = 263/501 (52%), Gaps = 28/501 (5%)
 Frame = -1

Query: 2987 KESQRSQANVARQDDNDSDFSLSILSGAGDSDESGWILDSGATCHICSTKKYFTSFVEWH 2808
            K+ +  +A V   + +D++  ++    A  SD+  WIL++    H+C  + +F ++    
Sbjct: 474  KKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQ--WILNTACIYHMCPNRDWFATYEAVQ 531

Query: 2807 -DEVSMGNESTSPVLGTGTVHIQMHDGMVRKLFDVRYIPGFRTNIISIGTLTSGGLKVIT 2631
               V MG+++   V G GTV I+M DG +R L DVR+IP  + ++IS+ TL   G K   
Sbjct: 532  VGTVLMGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSG 591

Query: 2630 EKDSLRVMKGSMIIM-IDIQVRNLYYLEGSAV-----TQARELSVEDHHTRLWHWRLDHA 2469
                L+V KGS+++M  DI+  NLY+L G+ +       +  LS  D  T LWH RL H 
Sbjct: 592  GDGILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSD-ATNLWHMRLGHM 650

Query: 2468 TMNSLLGLSRRECIKG-AICRHDICEHCAW--DKGVKFGTFIHQPVGLLDVVHMHIQGPS 2298
            T   L  LS+R  + G +I +   CEHC +   K VKF T  H   G+LD VH  + GP+
Sbjct: 651  TEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPA 710

Query: 2297 KVTSVEGNNYCLFC**THQIYVGSYY-KAQISSQGVFIKWKKVVELQTGRRIRKLH--DG 2127
            + TS  G  Y +     +   V  Y+ K +  +  VF +WK +VE QT R+++ L   +G
Sbjct: 711  RKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG 770

Query: 2126 MPSENPV-RELCLKQGIRRCYSSQRAKTMQLDSVTESMECILIRKVQYMMSSSRADKDLL 1950
            M   + + +  C  +GI R Y+     T Q + V E M   +I K + ++S++   K   
Sbjct: 771  MEFCSKIFKSYCKSEGIVRHYTVPH--TPQQNGVAERMNRTIISKARCLLSNAGLPKQFW 828

Query: 1949 TEILTYACYIINRLPSAAIEGKIPFEVWSGKTASDYGSLRVFGCP--AHEKTGSKE---- 1788
             E ++ ACY+INR PS AI+ K P EVWSG  A +Y  LRVFGC   AH   G  E    
Sbjct: 829  AEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAI 887

Query: 1787 -FLFVGI-KGVLGYKFWDPKSRNITLSRCIVFDEASLW--KQSSLAQEESGQTGMISQQV 1620
              +F+G   GV GYK W P+++ + +SR +VF E+ +   K S+    ES +    S QV
Sbjct: 888  KCIFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKA--SVQV 945

Query: 1619 EFDIT----PRESDITPQESD 1569
            E  I+    P + D+   + +
Sbjct: 946  EHLISSGHAPEKEDVAINQDE 966