BLASTX nr result
ID: Ophiopogon25_contig00015558
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00015558
(372 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Tritic... 86 3e-17
emb|CAA29002.1| unnamed protein product, partial (chloroplast) [... 55 2e-07
gb|ADK66930.1| PetD, partial (chloroplast) [Paeonia delavayi] >g... 53 6e-07
gb|ATX63227.1| PetD, partial (chloroplast) [Excoecaria agallocha... 53 6e-07
gb|KXG32556.1| hypothetical protein SORBI_3003G168600, partial [... 55 8e-07
ref|YP_009422090.1| cytochrome b6/f complex subunit IV (chloropl... 55 1e-06
gb|AHV90355.1| cytochrome b6/f complex subunit IV (chloroplast) ... 55 1e-06
ref|YP_009020168.1| cytochrome b6/f complex subunit IV (chloropl... 55 1e-06
ref|YP_009155570.1| cytochrome b6/f complex subunit IV (chloropl... 55 1e-06
gb|PNT08263.1| hypothetical protein POPTR_013G136800v3 [Populus ... 54 1e-06
ref|YP_009256269.1| cytochrome b6/f complex subunit IV (chloropl... 55 1e-06
gb|AKF00669.1| cytochrome b6/f complex subunit IV (chloroplast) ... 55 1e-06
gb|AKF00530.1| cytochrome b6/f complex subunit IV (chloroplast) ... 55 1e-06
gb|AKF00273.1| cytochrome b6/f complex subunit IV (chloroplast) ... 55 1e-06
ref|YP_009433342.1| cytochrome b6/f complex subunit IV (chloropl... 55 1e-06
emb|CAA32268.1| petD, partial (chloroplast) [Hordeum vulgare sub... 53 2e-06
ref|YP_009446294.1| cytochrome b6/f complex subunit IV (chloropl... 54 2e-06
gb|ATV97318.1| photosystem II 10kDa phosphoprotein (chloroplast)... 54 2e-06
gb|ATV97227.1| photosystem II 10kDa phosphoprotein (chloroplast)... 54 2e-06
gb|ATV97136.1| photosystem II 10kDa phosphoprotein (chloroplast)... 54 2e-06
>gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Triticum urartu]
Length = 430
Score = 86.3 bits (212), Expect = 3e-17
Identities = 50/105 (47%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Frame = -2
Query: 338 EFLRIHPPKEPDMIIFHHPARARIKGMTEXXXXXXXXXXXXXXIE*LYLNDSI*---EKI 168
E RIHPPKEPDM I+HHPARAR+K + NDS+ +
Sbjct: 335 ELFRIHPPKEPDMRIYHHPARARVKEIRPRKILNRIKVY----------NDSMTLGKKSF 384
Query: 167 YQILFP--NLQLFIAKNAVLTGKCSISK*AYKFDHNQVLFGLSHI 39
+ FP +LQL I N +L GKCSISK AYKFDH+Q+L GLSH+
Sbjct: 385 IRFSFPKLHLQLLIENNPILMGKCSISKWAYKFDHDQLLCGLSHV 429
>emb|CAA29002.1| unnamed protein product, partial (chloroplast) [Zea mays]
Length = 82
Score = 55.1 bits (131), Expect = 2e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILKNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKNSPIPITKKPDLN 24
>gb|ADK66930.1| PetD, partial (chloroplast) [Paeonia delavayi]
gb|ADK66932.1| PetD, partial (chloroplast) [Paeonia ludlowii]
gb|ADK66934.1| PetD, partial (chloroplast) [Paeonia yananensis]
gb|ADK66936.1| PetD, partial (chloroplast) [Paeonia jishanensis]
gb|ADK66938.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|ADK66940.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|ADK66942.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|ADK66944.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|ADK66946.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50864.1| PetD, partial (chloroplast) [Paeonia delavayi]
gb|AEO50866.1| PetD, partial (chloroplast) [Paeonia ludlowii]
gb|AEO50867.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50869.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50871.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50873.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50875.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50877.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50879.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50881.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50883.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50885.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50887.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50889.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50891.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50893.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50895.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50897.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50899.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50901.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50903.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50905.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50907.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50909.1| PetD, partial (chloroplast) [Paeonia rockii]
gb|AEO50911.1| PetD, partial (chloroplast) [Paeonia rockii]
Length = 64
Score = 53.1 bits (126), Expect = 6e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWI KNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWIYKNSPIPITKKPDLN 24
>gb|ATX63227.1| PetD, partial (chloroplast) [Excoecaria agallocha]
gb|ATX63228.1| PetD, partial (chloroplast) [Excoecaria agallocha]
gb|ATX63230.1| PetD, partial (chloroplast) [Excoecaria agallocha]
Length = 66
Score = 53.1 bits (126), Expect = 6e-07
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWI KNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWIYKNSPIPITKKPDLN 24
>gb|KXG32556.1| hypothetical protein SORBI_3003G168600, partial [Sorghum bicolor]
Length = 157
Score = 55.1 bits (131), Expect = 8e-07
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILKNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKNSPIPITKKPDLN 24
>ref|YP_009422090.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus x
giganteus]
emb|CRY90587.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus x
giganteus]
Length = 172
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILKNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKNSPIPITKKPDLN 24
>gb|AHV90355.1| cytochrome b6/f complex subunit IV (chloroplast) [Setaria italica]
Length = 174
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILKNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKNSPIPITKKPDLN 24
>ref|YP_009020168.1| cytochrome b6/f complex subunit IV (chloroplast) [Sorghum
timorense]
ref|YP_009072272.1| cytochrome b6/f complex subunit IV (chloroplast) [Echinochloa
oryzicola]
ref|YP_009242897.1| PetD (chloroplast) [Echinochloa frumentacea]
ref|YP_009251844.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
decumbens]
ref|YP_009251927.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
brizantha]
ref|YP_009252010.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
ruziziensis]
ref|YP_009252093.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
humidicola]
ref|YP_009332384.1| PetD (chloroplast) [Echinochloa colona]
ref|YP_009363943.1| cytochrome b6/f complex subunit IV (chloroplast) [Arundo plinii]
ref|YP_009371007.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum
spontaneum]
ref|YP_009389601.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum
officinarum]
ref|YP_009421772.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
floridulus]
ref|YP_009421878.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
junceus]
ref|YP_009421984.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
transmorrisonensis]
ref|YP_009466185.1| cytochrome b6/f complex subunit IV (chloroplast) [Arundo donax]
gb|AHL16855.1| cytochrome b6/f complex subunit IV (chloroplast) [Sorghum
timorense]
gb|AHL29580.1| cytochrome b6/f complex subunit IV (chloroplast) [Echinochloa
crus-galli var. crus-galli]
gb|AHL29666.1| cytochrome b6/f complex subunit IV (chloroplast) [Echinochloa
oryzicola]
gb|ALF40739.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
decumbens]
gb|ALF40821.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
brizantha]
gb|ALF40905.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
ruziziensis]
gb|ALF40988.1| cytochrome b6/f complex subunit IV (chloroplast) [Urochloa
humidicola]
gb|AMQ99149.1| PetD (chloroplast) [Echinochloa frumentacea]
gb|ANO44402.1| cytochrome b6-f complex subunit IV (chloroplast) [Echinochloa
crus-galli]
gb|ANQ92642.1| cytochrome b6-f complex subunit IV (chloroplast) [Echinochloa
colona]
gb|AOZ71481.1| cytochrome b6/f complex subunit IV (chloroplast) [Arundo donax]
gb|AOZ71578.1| cytochrome b6/f complex subunit IV (chloroplast) [Arundo plinii]
gb|APC62487.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum
spontaneum]
gb|API68072.1| PetD (chloroplast) [Echinochloa colona]
gb|API68159.1| PetD (chloroplast) [Echinochloa colona]
emb|CRK62342.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum
spontaneum]
emb|CRK62570.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum
officinarum]
emb|CRK62461.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum hybrid
cultivar]
emb|CRY90696.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
floridulus]
emb|CRY89062.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
junceus]
emb|CRY89171.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sacchariflorus]
emb|CRY89280.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sacchariflorus]
emb|CRY89389.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sacchariflorus]
emb|CRY89498.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. condensatus]
emb|CRY89607.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. sinensis]
emb|CRY89716.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. sinensis]
emb|CRY89825.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. sinensis]
emb|CRY89934.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis var. purpurascens]
emb|CRY90043.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. sinensis]
emb|CRY90152.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. sinensis]
emb|CRY90261.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. sinensis]
emb|CRY90370.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
sinensis subsp. sinensis]
emb|CRY90478.1| cytochrome b6/f complex subunit IV (chloroplast) [Miscanthus
transmorrisonensis]
emb|CUS18914.1| cytochrome b6/f complex subunit IV (plastid) [Miscanthus sinensis
subsp. sinensis]
emb|CUS19180.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum hybrid
cultivar]
emb|CUS19073.1| cytochrome b6/f complex subunit IV (chloroplast) [Saccharum
spontaneum]
Length = 174
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILKNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKNSPIPITKKPDLN 24
>ref|YP_009155570.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza barthii]
ref|YP_009155653.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza
glumipatula]
ref|YP_009155736.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza
longistaminata]
ref|YP_009155819.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza
officinalis]
ref|YP_009450708.1| cytochrome b6/f complex subunit IV (chloroplast) [Streptogyna
americana]
gb|AER12849.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza sativa
Indica Group]
gb|AER12936.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza sativa
Indica Group]
gb|AGY48977.1| cytochrome b6-f complex subunit 4 (chloroplast) [Oryza rufipogon]
gb|AJP33641.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza barthii]
gb|AJP33723.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza barthii]
gb|AJP33805.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza barthii]
gb|AJP33887.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza barthii]
gb|AJP33970.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza glaberrima]
gb|AJP34051.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza glaberrima]
gb|AJP34134.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza
glumipatula]
gb|AJP34217.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza
longistaminata]
gb|AJP34300.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza
longistaminata]
gb|AJP34383.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza
officinalis]
gb|ARO91722.1| cytochrome b6/f complex subunit IV (chloroplast) [Streptogyna
americana]
Length = 174
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILKNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKNSPIPITKKPDLN 24
>gb|PNT08263.1| hypothetical protein POPTR_013G136800v3 [Populus trichocarpa]
Length = 106
Score = 53.5 bits (127), Expect = 1e-06
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWI KNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWIFKNSPIPITKKPDLN 24
>ref|YP_009256269.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza minuta]
gb|AMB21009.1| cytochrome b6/f complex subunit IV (chloroplast) [Oryza minuta]
Length = 187
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/24 (100%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILKNSPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKNSPIPITKKPDLN 24
>gb|AKF00669.1| cytochrome b6/f complex subunit IV (chloroplast) [Reinhardtia
simplex]
gb|AKF00954.1| cytochrome b6/f complex subunit IV (chloroplast) [Areca vestiaria]
Length = 189
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 295 IIMSGSFGGWILKNSPIPITKKPDLN 372
+IMSGSFGGWI KNSPIPITKKPDLN
Sbjct: 1 MIMSGSFGGWIYKNSPIPITKKPDLN 26
>gb|AKF00530.1| cytochrome b6/f complex subunit IV (chloroplast) [Roystonea regia]
Length = 189
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 295 IIMSGSFGGWILKNSPIPITKKPDLN 372
+IMSGSFGGWI KNSPIPITKKPDLN
Sbjct: 1 MIMSGSFGGWIYKNSPIPITKKPDLN 26
>gb|AKF00273.1| cytochrome b6/f complex subunit IV (chloroplast) [Podococcus
barteri]
Length = 189
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 295 IIMSGSFGGWILKNSPIPITKKPDLN 372
+IMSGSFGGWI KNSPIPITKKPDLN
Sbjct: 1 MIMSGSFGGWIYKNSPIPITKKPDLN 26
>ref|YP_009433342.1| cytochrome b6/f complex subunit IV (chloroplast) [Zostera marina]
gb|ATD85252.1| cytochrome b6/f complex subunit IV (chloroplast) [Zostera marina]
Length = 176
Score = 54.7 bits (130), Expect = 1e-06
Identities = 24/26 (92%), Positives = 25/26 (96%)
Frame = +1
Query: 295 IIMSGSFGGWILKNSPIPITKKPDLN 372
+IMSGSFGGWI KNSPIPITKKPDLN
Sbjct: 1 MIMSGSFGGWIRKNSPIPITKKPDLN 26
>emb|CAA32268.1| petD, partial (chloroplast) [Hordeum vulgare subsp. vulgare]
Length = 106
Score = 53.1 bits (126), Expect = 2e-06
Identities = 23/24 (95%), Positives = 24/24 (100%)
Frame = +1
Query: 301 MSGSFGGWILKNSPIPITKKPDLN 372
MSGSFGGWILK+SPIPITKKPDLN
Sbjct: 1 MSGSFGGWILKSSPIPITKKPDLN 24
>ref|YP_009446294.1| cytochrome b6/f complex subunit IV (chloroplast) [Symplocos
ovatilobata]
gb|ATY40719.1| cytochrome b6/f complex subunit IV (chloroplast) [Symplocos
ovatilobata]
Length = 177
Score = 54.3 bits (129), Expect = 2e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 298 IMSGSFGGWILKNSPIPITKKPDLN 372
+MSGSFGGWI KNSPIPITKKPDLN
Sbjct: 3 VMSGSFGGWIYKNSPIPITKKPDLN 27
>gb|ATV97318.1| photosystem II 10kDa phosphoprotein (chloroplast) [Eschweilera
integrifolia]
gb|ATV98674.1| photosystem II 10kDa phosphoprotein (chloroplast) [Eschweilera
caudiculata]
Length = 177
Score = 54.3 bits (129), Expect = 2e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 298 IMSGSFGGWILKNSPIPITKKPDLN 372
+MSGSFGGWI KNSPIPITKKPDLN
Sbjct: 3 VMSGSFGGWIYKNSPIPITKKPDLN 27
>gb|ATV97227.1| photosystem II 10kDa phosphoprotein (chloroplast) [Allantoma
lineata]
Length = 177
Score = 54.3 bits (129), Expect = 2e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 298 IMSGSFGGWILKNSPIPITKKPDLN 372
+MSGSFGGWI KNSPIPITKKPDLN
Sbjct: 3 VMSGSFGGWIYKNSPIPITKKPDLN 27
>gb|ATV97136.1| photosystem II 10kDa phosphoprotein (chloroplast) [Eschweilera
alata]
Length = 177
Score = 54.3 bits (129), Expect = 2e-06
Identities = 23/25 (92%), Positives = 24/25 (96%)
Frame = +1
Query: 298 IMSGSFGGWILKNSPIPITKKPDLN 372
+MSGSFGGWI KNSPIPITKKPDLN
Sbjct: 3 VMSGSFGGWIYKNSPIPITKKPDLN 27