BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00014434
         (1022 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010916569.2| PREDICTED: RNA polymerase II transcription f...   254   2e-77
ref|XP_008802071.1| PREDICTED: RNA polymerase II transcription f...   251   3e-76
ref|XP_008802068.1| PREDICTED: RNA polymerase II transcription f...   251   4e-76
ref|XP_009409177.1| PREDICTED: RNA polymerase II transcription f...   233   2e-71
ref|XP_008802070.1| PREDICTED: RNA polymerase II transcription f...   236   1e-70
emb|CBI19033.3| unnamed protein product, partial [Vitis vinifera]     230   2e-70
ref|XP_020678107.1| RNA polymerase II transcription factor B sub...   230   3e-70
ref|XP_002284465.2| PREDICTED: RNA polymerase II transcription f...   230   3e-70
ref|XP_020578476.1| RNA polymerase II transcription factor B sub...   226   8e-69
gb|OVA02025.1| TFIIH subunit Tfb4/p34 [Macleaya cordata]              224   2e-68
gb|PKA49129.1| hypothetical protein AXF42_Ash010814 [Apostasia s...   219   2e-66
ref|XP_018683985.1| PREDICTED: RNA polymerase II transcription f...   219   7e-66
gb|PNT37223.1| hypothetical protein POPTR_005G176600v3 [Populus ...   217   2e-65
ref|XP_015885697.1| PREDICTED: RNA polymerase II transcription f...   217   3e-65
ref|XP_010999372.1| PREDICTED: general transcription factor IIH ...   217   4e-65
ref|XP_010999370.1| PREDICTED: general transcription factor IIH ...   217   4e-65
ref|XP_002307429.2| basal transcription factor complex subunit-r...   217   4e-65
gb|EOY16262.1| Basal transcription factor complex subunit-relate...   215   8e-65
ref|XP_020678108.1| RNA polymerase II transcription factor B sub...   216   8e-65
ref|XP_021859258.1| RNA polymerase II transcription factor B sub...   216   1e-64

>ref|XP_010916569.2| PREDICTED: RNA polymerase II transcription factor B subunit 4
           [Elaeis guineensis]
          Length = 486

 Score =  254 bits (649), Expect = 2e-77
 Identities = 141/227 (62%), Positives = 154/227 (67%), Gaps = 9/227 (3%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGG---------AATISFAKFLNHVIPFXXXXXX 503
           M  APSK               NPFFW G         AAT+ FAKFLNHVIPF      
Sbjct: 1   MNSAPSKLYTDDVSLVVVLLDANPFFWAGGGGTSPHHPAATLPFAKFLNHVIPFLNSVLL 60

Query: 502 XXXXXQIVVIATGVNSCGYIYDSEGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKE 323
                Q+V+IATGVNSCGYIYDS GG  GS  G +  VCSEIL+K+EEFV  D +++ K 
Sbjct: 61  LNQLNQVVLIATGVNSCGYIYDSAGG--GSHGGNVPAVCSEILRKVEEFVAKD-RRLGKG 117

Query: 322 KDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIF 143
            DRVV               LCYIQRVFRSGALHPQPRILCL GSPDGPEQYVAVMN+IF
Sbjct: 118 PDRVVAGGVSSLLSGSLSLALCYIQRVFRSGALHPQPRILCLQGSPDGPEQYVAVMNAIF 177

Query: 142 SAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           SAQRSMV IDSCV+G QHSAFLQQASYITGGVYLK Q LDGL++YLA
Sbjct: 178 SAQRSMVPIDSCVIGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLA 224


>ref|XP_008802071.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X3 [Phoenix dactylifera]
 ref|XP_008802073.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X3 [Phoenix dactylifera]
          Length = 459

 Score =  251 bits (640), Expect = 3e-76
 Identities = 142/230 (61%), Positives = 155/230 (67%), Gaps = 12/230 (5%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW-----GG-------AATISFAKFLNHVIPFXXX 512
           M  APSK               NPFFW     GG       AAT+ FAKFLNHVIPF   
Sbjct: 1   MNSAPSKLYSDDVSLVVVLLDTNPFFWAAGAGGGNTSPHHPAATLPFAKFLNHVIPFLNS 60

Query: 511 XXXXXXXXQIVVIATGVNSCGYIYDSEGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKV 332
                   Q+V+IATGVNSCGYIYDS GG  GS  G +  VCSEIL++LEEFV  D +++
Sbjct: 61  VLLLNQLNQVVLIATGVNSCGYIYDSAGG--GSHGGNVPAVCSEILRRLEEFVAKD-RRL 117

Query: 331 VKEKDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMN 152
            K  DRVV               LCYIQRVFRSGALHPQPRILCL  SPDGPEQYVAVMN
Sbjct: 118 GKGPDRVVVGGVSSLLSGSLSLALCYIQRVFRSGALHPQPRILCLQASPDGPEQYVAVMN 177

Query: 151 SIFSAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           +IFSAQRSMV IDSCV+G QHSAFLQQASYITGGVYLK QQLDGL++YLA
Sbjct: 178 AIFSAQRSMVPIDSCVIGVQHSAFLQQASYITGGVYLKPQQLDGLFQYLA 227


>ref|XP_008802068.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X1 [Phoenix dactylifera]
 ref|XP_008802069.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X1 [Phoenix dactylifera]
          Length = 475

 Score =  251 bits (640), Expect = 4e-76
 Identities = 142/230 (61%), Positives = 155/230 (67%), Gaps = 12/230 (5%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW-----GG-------AATISFAKFLNHVIPFXXX 512
           M  APSK               NPFFW     GG       AAT+ FAKFLNHVIPF   
Sbjct: 1   MNSAPSKLYSDDVSLVVVLLDTNPFFWAAGAGGGNTSPHHPAATLPFAKFLNHVIPFLNS 60

Query: 511 XXXXXXXXQIVVIATGVNSCGYIYDSEGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKV 332
                   Q+V+IATGVNSCGYIYDS GG  GS  G +  VCSEIL++LEEFV  D +++
Sbjct: 61  VLLLNQLNQVVLIATGVNSCGYIYDSAGG--GSHGGNVPAVCSEILRRLEEFVAKD-RRL 117

Query: 331 VKEKDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMN 152
            K  DRVV               LCYIQRVFRSGALHPQPRILCL  SPDGPEQYVAVMN
Sbjct: 118 GKGPDRVVVGGVSSLLSGSLSLALCYIQRVFRSGALHPQPRILCLQASPDGPEQYVAVMN 177

Query: 151 SIFSAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           +IFSAQRSMV IDSCV+G QHSAFLQQASYITGGVYLK QQLDGL++YLA
Sbjct: 178 AIFSAQRSMVPIDSCVIGVQHSAFLQQASYITGGVYLKPQQLDGLFQYLA 227


>ref|XP_009409177.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X1 [Musa acuminata subsp. malaccensis]
 ref|XP_009409178.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X1 [Musa acuminata subsp. malaccensis]
 ref|XP_018683984.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X1 [Musa acuminata subsp. malaccensis]
          Length = 314

 Score =  233 bits (595), Expect = 2e-71
 Identities = 128/229 (55%), Positives = 146/229 (63%), Gaps = 14/229 (6%)
 Frame = -2

Query: 646 APSKXXXXXXXXXXXXXXVNPFFWGGAA--------------TISFAKFLNHVIPFXXXX 509
           APSK               NPFFW  +A              T+ F+K LNHVIP     
Sbjct: 6   APSKLYSDDVSLIVVLLDANPFFWASSAAAAGDSASSHHPTTTLPFSKLLNHVIPLLNSL 65

Query: 508 XXXXXXXQIVVIATGVNSCGYIYDSEGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVV 329
                  Q+V++ATGVNSCGYIYDS  G  GS  G +  +CSEIL++LEEFV  D  +  
Sbjct: 66  LLLNQLNQVVLVATGVNSCGYIYDSGDGGGGSACGSVPAICSEILRRLEEFVVKDRLQG- 124

Query: 328 KEKDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNS 149
           K  D+VV               LCYIQRVFRS A HPQPRILCL GSPDGPEQYVAVMN+
Sbjct: 125 KSPDKVVATGVSSLLSGSLSLALCYIQRVFRSRARHPQPRILCLQGSPDGPEQYVAVMNA 184

Query: 148 IFSAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           IFSAQRSM+ IDSCV+G QHSAFLQQASYITGGVYLK QQLDGL++YL+
Sbjct: 185 IFSAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQQLDGLFQYLS 233


>ref|XP_008802070.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X2 [Phoenix dactylifera]
          Length = 470

 Score =  236 bits (603), Expect = 1e-70
 Identities = 138/230 (60%), Positives = 151/230 (65%), Gaps = 12/230 (5%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW-----GG-------AATISFAKFLNHVIPFXXX 512
           M  APSK               NPFFW     GG       AAT+ FAKFLNHVIPF   
Sbjct: 1   MNSAPSKLYSDDVSLVVVLLDTNPFFWAAGAGGGNTSPHHPAATLPFAKFLNHVIPFLNS 60

Query: 511 XXXXXXXXQIVVIATGVNSCGYIYDSEGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKV 332
                   Q+V+IATGVNSCGYIYDS GG  GS  G +  VCSEIL++LEEFV  D +++
Sbjct: 61  VLLLNQLNQVVLIATGVNSCGYIYDSAGG--GSHGGNVPAVCSEILRRLEEFVAKD-RRL 117

Query: 331 VKEKDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMN 152
            K  DRVV               LCYIQRVFRSGALHPQPR      SPDGPEQYVAVMN
Sbjct: 118 GKGPDRVVVGGVSSLLSGSLSLALCYIQRVFRSGALHPQPR-----ASPDGPEQYVAVMN 172

Query: 151 SIFSAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           +IFSAQRSMV IDSCV+G QHSAFLQQASYITGGVYLK QQLDGL++YLA
Sbjct: 173 AIFSAQRSMVPIDSCVIGVQHSAFLQQASYITGGVYLKPQQLDGLFQYLA 222


>emb|CBI19033.3| unnamed protein product, partial [Vitis vinifera]
          Length = 297

 Score =  230 bits (587), Expect = 2e-70
 Identities = 125/220 (56%), Positives = 145/220 (65%), Gaps = 2/220 (0%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVV 476
           M P PSK               NPFFW   A++ F+KFL+HV+ F           Q+VV
Sbjct: 1   MAPVPSKLYSDDVSLLVVLLDTNPFFWS-TASLPFSKFLSHVLAFLNSILLINQLNQVVV 59

Query: 475 IATGVNSCGYIYDSEG--GHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKEKDRVVXX 302
           IATG NSC +I+DS     +   E G+M  +CS +LQKLEEFV GD K     K+ +   
Sbjct: 60  IATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKL---SKEVLAAG 116

Query: 301 XXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSMV 122
                        LCYIQRVFR+G LHPQPRILCL GSPDGPEQYVAVMN+IFSAQRSMV
Sbjct: 117 IGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMV 176

Query: 121 HIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
            IDSCV+GAQHSAFLQQASYITGGVYLK QQLDGL++YL+
Sbjct: 177 PIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLS 216


>ref|XP_020678107.1| RNA polymerase II transcription factor B subunit 4 isoform X1
           [Dendrobium catenatum]
 gb|PKU85560.1| hypothetical protein MA16_Dca003300 [Dendrobium catenatum]
          Length = 302

 Score =  230 bits (587), Expect = 3e-70
 Identities = 129/227 (56%), Positives = 153/227 (67%), Gaps = 9/227 (3%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW-----GG---AATISFAKFLNHVIPFXXXXXXX 500
           M  APSK               NPFFW     GG   AAT+ F+KFL+HVIPF       
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDANPFFWAAGAGGGNHPAATLPFSKFLDHVIPFLNSLLLM 60

Query: 499 XXXXQIVVIATGVNSCGYIYDS-EGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKE 323
               Q+V+IATG+N+CGYIYDS  GG +GS+   ++ + SEIL +LEEFV  D +K+ K 
Sbjct: 61  NQLNQVVLIATGINTCGYIYDSGNGGPEGSD--NVSEISSEILLRLEEFVCKD-RKIGKG 117

Query: 322 KDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIF 143
            +R +               LCY+Q+VFRSGA+HPQPRILCL  SPDGPEQYVAVMN+IF
Sbjct: 118 TERAMGGSVSSLLSGSLSLALCYVQKVFRSGAIHPQPRILCLQASPDGPEQYVAVMNAIF 177

Query: 142 SAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           SAQRSMV IDSCVVG QHSAFLQQASYITGG+YLK  QLDGL++YLA
Sbjct: 178 SAQRSMVPIDSCVVGVQHSAFLQQASYITGGIYLKPPQLDGLFQYLA 224


>ref|XP_002284465.2| PREDICTED: RNA polymerase II transcription factor B subunit 4
           [Vitis vinifera]
          Length = 303

 Score =  230 bits (587), Expect = 3e-70
 Identities = 125/220 (56%), Positives = 145/220 (65%), Gaps = 2/220 (0%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVV 476
           M P PSK               NPFFW   A++ F+KFL+HV+ F           Q+VV
Sbjct: 7   MAPVPSKLYSDDVSLLVVLLDTNPFFWS-TASLPFSKFLSHVLAFLNSILLINQLNQVVV 65

Query: 475 IATGVNSCGYIYDSEG--GHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKEKDRVVXX 302
           IATG NSC +I+DS     +   E G+M  +CS +LQKLEEFV GD K     K+ +   
Sbjct: 66  IATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKL---SKEVLAAG 122

Query: 301 XXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSMV 122
                        LCYIQRVFR+G LHPQPRILCL GSPDGPEQYVAVMN+IFSAQRSMV
Sbjct: 123 IGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMV 182

Query: 121 HIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
            IDSCV+GAQHSAFLQQASYITGGVYLK QQLDGL++YL+
Sbjct: 183 PIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLS 222


>ref|XP_020578476.1| RNA polymerase II transcription factor B subunit 4 isoform X1
           [Phalaenopsis equestris]
          Length = 301

 Score =  226 bits (577), Expect = 8e-69
 Identities = 129/228 (56%), Positives = 151/228 (66%), Gaps = 10/228 (4%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW-------GG---AATISFAKFLNHVIPFXXXXX 506
           M  APSK              VNPFFW       GG   AA ++FAKFL+HVIPF     
Sbjct: 1   MASAPSKLYSDDVSLVAVLLDVNPFFWAASAGAGGGNHTAAALTFAKFLDHVIPFLNSLL 60

Query: 505 XXXXXXQIVVIATGVNSCGYIYDSEGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVK 326
                 Q+V+IATG+NSCGYIYDS      S+  K++ V SE+L++L EFV  D ++VVK
Sbjct: 61  LMNQLNQVVLIATGINSCGYIYDSGSSLDVSD--KVSEVSSEVLRRLGEFVYKD-RRVVK 117

Query: 325 EKDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSI 146
             +  +               LCYIQ+VFRSGA+HPQPRILCL  SPDGPEQYVAVMN+I
Sbjct: 118 GAESAMGSNVTSLLSGSLSLALCYIQKVFRSGAIHPQPRILCLQASPDGPEQYVAVMNAI 177

Query: 145 FSAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           FSAQRSMV IDSCVVG QHSAFLQQASYITGG+YLK  QLDGL++YLA
Sbjct: 178 FSAQRSMVPIDSCVVGVQHSAFLQQASYITGGIYLKPPQLDGLFQYLA 225


>gb|OVA02025.1| TFIIH subunit Tfb4/p34 [Macleaya cordata]
          Length = 250

 Score =  224 bits (570), Expect = 2e-68
 Identities = 126/224 (56%), Positives = 142/224 (63%), Gaps = 7/224 (3%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAAT----ISFAKFLNHVIPFXXXXXXXXXXX 488
           M  APSK               NPFFWGG  T    +SF+ FL HVI F           
Sbjct: 1   MASAPSKQYSDDVSLLMVLLDTNPFFWGGTNTTTGVLSFSSFLTHVISFLNSIILLNQLN 60

Query: 487 QIVVIATGVNSCGYIYDSEGGHQ---GSEVGKMAVVCSEILQKLEEFVEGDMKKVVKEKD 317
           Q+VVIATG NSC YIY+S         S+ G+M  +CS++LQKLEEFV  D +     K+
Sbjct: 61  QVVVIATGFNSCDYIYESSTSEAIIVNSDNGQMPALCSKMLQKLEEFVIRDEQL---SKE 117

Query: 316 RVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSA 137
                             LCYIQ+VFRSG LHP PRILCL GSPDGPEQYVAVMN+IFSA
Sbjct: 118 NSPTGIVSSLLSGSLSLALCYIQKVFRSGPLHPHPRILCLQGSPDGPEQYVAVMNAIFSA 177

Query: 136 QRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYL 5
           QRSMV IDSCV+GAQHSAFLQQASYITGGVYLK QQLDGL++YL
Sbjct: 178 QRSMVPIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYL 221


>gb|PKA49129.1| hypothetical protein AXF42_Ash010814 [Apostasia shenzhenica]
          Length = 281

 Score =  219 bits (559), Expect = 2e-66
 Identities = 131/226 (57%), Positives = 145/226 (64%), Gaps = 9/226 (3%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW-----GG---AATISFAKFLNHVIPFXXXXXXX 500
           M  APSK              VNPFFW     GG   AAT+ F+KFL HVIPF       
Sbjct: 1   MSSAPSKLYADDVSLVVVLLDVNPFFWAAGASGGNHPAATLPFSKFLKHVIPFLNSLLLL 60

Query: 499 XXXXQIVVIATGVNSCGYIYDSEGGHQGSEVG-KMAVVCSEILQKLEEFVEGDMKKVVKE 323
               ++V+IATG NSCGYIYDS  G  GSE   ++  V SEIL+ L EFVE D +KV + 
Sbjct: 61  NQLNRVVLIATGTNSCGYIYDS--GSSGSEGNNRVPKVYSEILRNLAEFVEND-RKVGRG 117

Query: 322 KDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIF 143
            +RV                 CYIQRVFRSG +HPQPRILCL  SPDGPEQYVAVMN+IF
Sbjct: 118 PERVASSVPSLLSGSLSLAL-CYIQRVFRSGPIHPQPRILCLQASPDGPEQYVAVMNAIF 176

Query: 142 SAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYL 5
           SAQRSMV IDSCVVG  HSAFLQQASYITGGVYLK  QLDGL +YL
Sbjct: 177 SAQRSMVPIDSCVVGVYHSAFLQQASYITGGVYLKLPQLDGLCQYL 222


>ref|XP_018683985.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
           isoform X2 [Musa acuminata subsp. malaccensis]
          Length = 309

 Score =  219 bits (558), Expect = 7e-66
 Identities = 124/229 (54%), Positives = 142/229 (62%), Gaps = 14/229 (6%)
 Frame = -2

Query: 646 APSKXXXXXXXXXXXXXXVNPFFWGGAA--------------TISFAKFLNHVIPFXXXX 509
           APSK               NPFFW  +A              T+ F+K LNHVIP     
Sbjct: 6   APSKLYSDDVSLIVVLLDANPFFWASSAAAAGDSASSHHPTTTLPFSKLLNHVIPLLNSL 65

Query: 508 XXXXXXXQIVVIATGVNSCGYIYDSEGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVV 329
                  Q+V++ATGVNSCGYIYDS  G  GS  G +  +CSEIL++LEEFV  D  +  
Sbjct: 66  LLLNQLNQVVLVATGVNSCGYIYDSGDGGGGSACGSVPAICSEILRRLEEFVVKDRLQG- 124

Query: 328 KEKDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNS 149
           K  D+VV               LCYIQRVFRS A HPQPR     GSPDGPEQYVAVMN+
Sbjct: 125 KSPDKVVATGVSSLLSGSLSLALCYIQRVFRSRARHPQPR-----GSPDGPEQYVAVMNA 179

Query: 148 IFSAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           IFSAQRSM+ IDSCV+G QHSAFLQQASYITGGVYLK QQLDGL++YL+
Sbjct: 180 IFSAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQQLDGLFQYLS 228


>gb|PNT37223.1| hypothetical protein POPTR_005G176600v3 [Populus trichocarpa]
          Length = 275

 Score =  217 bits (552), Expect = 2e-65
 Identities = 118/219 (53%), Positives = 141/219 (64%), Gaps = 2/219 (0%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVV 476
           M   PSK               NPFFW   +++SF++FL+HV+ F           Q+VV
Sbjct: 1   MTSVPSKLYSDDVSLVVVLLDTNPFFWTPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVV 60

Query: 475 IATGVNSCGYIYDS--EGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKEKDRVVXX 302
           IA+G N+C YIYDS  +    GSE G+M  + S +LQKLEEF+  D K   ++  R +  
Sbjct: 61  IASGYNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKS 120

Query: 301 XXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSMV 122
                         CYIQRVFRSG LHPQPRILCL GSPDGPEQYVAVMN+IFSAQRSMV
Sbjct: 121 SLLSGSLSMAL---CYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMV 177

Query: 121 HIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYL 5
            IDSC VGA +SAFLQQASYITGGVY+K Q LDGL++YL
Sbjct: 178 PIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYL 216


>ref|XP_015885697.1| PREDICTED: RNA polymerase II transcription factor B subunit 4-like
           [Ziziphus jujuba]
 ref|XP_015867094.1| PREDICTED: RNA polymerase II transcription factor B subunit 4-like
           [Ziziphus jujuba]
 ref|XP_015867095.1| PREDICTED: RNA polymerase II transcription factor B subunit 4-like
           [Ziziphus jujuba]
 ref|XP_015867096.1| PREDICTED: RNA polymerase II transcription factor B subunit 4-like
           [Ziziphus jujuba]
          Length = 295

 Score =  217 bits (553), Expect = 3e-65
 Identities = 117/197 (59%), Positives = 137/197 (69%), Gaps = 1/197 (0%)
 Frame = -2

Query: 589 NPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVVIATGVNSCGYIYDSE-GGHQGS 413
           NPFFW   +++ F+KFL+HV+ F           Q+VVIATG NSC YIYDS      GS
Sbjct: 23  NPFFWT-TSSLPFSKFLSHVLSFLNSIMLLNQFNQVVVIATGYNSCDYIYDSSLATDHGS 81

Query: 412 EVGKMAVVCSEILQKLEEFVEGDMKKVVKEKDRVVXXXXXXXXXXXXXXXLCYIQRVFRS 233
           E GKM  +CS +LQKLEEFV  D ++    KD                  LCYIQ+VFRS
Sbjct: 82  ENGKMPALCSNLLQKLEEFVIRDQQQ---RKDGSGEGLPSSLLSGSLSMALCYIQKVFRS 138

Query: 232 GALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSMVHIDSCVVGAQHSAFLQQASYITG 53
           G LHPQPRILCL GSPDGPEQYVA+MN+IFSAQR MV IDSC +G+ +SAFLQQASYITG
Sbjct: 139 GPLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRLMVPIDSCYIGSNNSAFLQQASYITG 198

Query: 52  GVYLKTQQLDGLYEYLA 2
           GVYLK QQLDGL++YL+
Sbjct: 199 GVYLKPQQLDGLFQYLS 215


>ref|XP_010999372.1| PREDICTED: general transcription factor IIH subunit 3 isoform X3
           [Populus euphratica]
          Length = 295

 Score =  217 bits (552), Expect = 4e-65
 Identities = 117/219 (53%), Positives = 142/219 (64%), Gaps = 2/219 (0%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVV 476
           M   PSK               NPFFW  ++++SF++FL+HV+ F           Q+VV
Sbjct: 1   MTSVPSKLYSDDVSLLVVLLDTNPFFWTASSSLSFSQFLSHVLAFVNSILLLNQLNQVVV 60

Query: 475 IATGVNSCGYIYDS--EGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKEKDRVVXX 302
           IA+G N+C YIYDS  +    GSE G++  + S +LQKLEEF+  D K   ++  R +  
Sbjct: 61  IASGYNTCDYIYDSSSDASQLGSENGRIPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKS 120

Query: 301 XXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSMV 122
                         CYIQRVFRSG LHPQPRILCL GSPDGPEQYVAVMN+IFSAQRSMV
Sbjct: 121 SLLSGSLSMAL---CYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMV 177

Query: 121 HIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYL 5
            IDSC VGA +SAFLQQASYITGGVY+K Q LDGL++YL
Sbjct: 178 PIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYL 216


>ref|XP_010999370.1| PREDICTED: general transcription factor IIH subunit 3 isoform X2
           [Populus euphratica]
 ref|XP_010999371.1| PREDICTED: general transcription factor IIH subunit 3 isoform X2
           [Populus euphratica]
          Length = 298

 Score =  217 bits (552), Expect = 4e-65
 Identities = 117/219 (53%), Positives = 142/219 (64%), Gaps = 2/219 (0%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVV 476
           M   PSK               NPFFW  ++++SF++FL+HV+ F           Q+VV
Sbjct: 1   MTSVPSKLYSDDVSLLVVLLDTNPFFWTASSSLSFSQFLSHVLAFVNSILLLNQLNQVVV 60

Query: 475 IATGVNSCGYIYDS--EGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKEKDRVVXX 302
           IA+G N+C YIYDS  +    GSE G++  + S +LQKLEEF+  D K   ++  R +  
Sbjct: 61  IASGYNTCDYIYDSSSDASQLGSENGRIPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKS 120

Query: 301 XXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSMV 122
                         CYIQRVFRSG LHPQPRILCL GSPDGPEQYVAVMN+IFSAQRSMV
Sbjct: 121 SLLSGSLSMAL---CYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMV 177

Query: 121 HIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYL 5
            IDSC VGA +SAFLQQASYITGGVY+K Q LDGL++YL
Sbjct: 178 PIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYL 216


>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
           [Populus trichocarpa]
 gb|PNT37221.1| hypothetical protein POPTR_005G176600v3 [Populus trichocarpa]
 gb|PNT37222.1| hypothetical protein POPTR_005G176600v3 [Populus trichocarpa]
 gb|PNT37224.1| hypothetical protein POPTR_005G176600v3 [Populus trichocarpa]
          Length = 298

 Score =  217 bits (552), Expect = 4e-65
 Identities = 118/219 (53%), Positives = 141/219 (64%), Gaps = 2/219 (0%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVV 476
           M   PSK               NPFFW   +++SF++FL+HV+ F           Q+VV
Sbjct: 1   MTSVPSKLYSDDVSLVVVLLDTNPFFWTPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVV 60

Query: 475 IATGVNSCGYIYDS--EGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKEKDRVVXX 302
           IA+G N+C YIYDS  +    GSE G+M  + S +LQKLEEF+  D K   ++  R +  
Sbjct: 61  IASGYNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKS 120

Query: 301 XXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSMV 122
                         CYIQRVFRSG LHPQPRILCL GSPDGPEQYVAVMN+IFSAQRSMV
Sbjct: 121 SLLSGSLSMAL---CYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMV 177

Query: 121 HIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYL 5
            IDSC VGA +SAFLQQASYITGGVY+K Q LDGL++YL
Sbjct: 178 PIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYL 216


>gb|EOY16262.1| Basal transcription factor complex subunit-related isoform 2
           [Theobroma cacao]
          Length = 274

 Score =  215 bits (548), Expect = 8e-65
 Identities = 122/220 (55%), Positives = 144/220 (65%), Gaps = 3/220 (1%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXQIVV 476
           M  APSK               NPFFW  A+++SF++FL+HV+ F           Q+VV
Sbjct: 1   MASAPSKLYADDVSLVVVLVDTNPFFWS-ASSLSFSQFLSHVLAFLNAILTLNQLNQVVV 59

Query: 475 IATGVNSCGYIYDSEGG-HQGSEVGKMAVVCSEILQKLEEFVEGD--MKKVVKEKDRVVX 305
           IATG NSC YI+DS    +Q  E G+M V+CS +LQKLEEF+  D  + K V E      
Sbjct: 60  IATGYNSCNYIFDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQLSKEVPE-----G 114

Query: 304 XXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIFSAQRSM 125
                         LCYIQRVFRSGALHP PRILCL GSPDGPEQYVA+MN+IFSAQRSM
Sbjct: 115 RIKSSLLSGSLSMALCYIQRVFRSGALHPHPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174

Query: 124 VHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYL 5
           V IDSC +GAQ+SAFLQQASYITGGV+ K Q LDGL++YL
Sbjct: 175 VPIDSCYMGAQNSAFLQQASYITGGVHHKPQHLDGLFQYL 214


>ref|XP_020678108.1| RNA polymerase II transcription factor B subunit 4 isoform X2
           [Dendrobium catenatum]
          Length = 297

 Score =  216 bits (550), Expect = 8e-65
 Identities = 125/227 (55%), Positives = 149/227 (65%), Gaps = 9/227 (3%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW-----GG---AATISFAKFLNHVIPFXXXXXXX 500
           M  APSK               NPFFW     GG   AAT+ F+KFL+HVIPF       
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDANPFFWAAGAGGGNHPAATLPFSKFLDHVIPFLNSLLLM 60

Query: 499 XXXXQIVVIATGVNSCGYIYDS-EGGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVKE 323
               Q+V+IATG+N+CGYIYDS  GG +GS+   ++ + SEIL +LEEFV  D +K+ K 
Sbjct: 61  NQLNQVVLIATGINTCGYIYDSGNGGPEGSD--NVSEISSEILLRLEEFVCKD-RKIGKG 117

Query: 322 KDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSIF 143
            +R +               LCY+Q+VFRSGA+HPQPR      SPDGPEQYVAVMN+IF
Sbjct: 118 TERAMGGSVSSLLSGSLSLALCYVQKVFRSGAIHPQPR-----ASPDGPEQYVAVMNAIF 172

Query: 142 SAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           SAQRSMV IDSCVVG QHSAFLQQASYITGG+YLK  QLDGL++YLA
Sbjct: 173 SAQRSMVPIDSCVVGVQHSAFLQQASYITGGIYLKPPQLDGLFQYLA 219


>ref|XP_021859258.1| RNA polymerase II transcription factor B subunit 4 [Spinacia
           oleracea]
 gb|KNA24492.1| hypothetical protein SOVF_014890 [Spinacia oleracea]
          Length = 305

 Score =  216 bits (549), Expect = 1e-64
 Identities = 116/228 (50%), Positives = 142/228 (62%), Gaps = 10/228 (4%)
 Frame = -2

Query: 655 MIPAPSKXXXXXXXXXXXXXXVNPFFW--GGAATISFAKFLNHVIPFXXXXXXXXXXXQI 482
           M P  SK               NP+FW    ++++SF+ F++HV+ F           Q+
Sbjct: 1   MAPIASKLYTDDVSLVVLLLDTNPYFWTSSSSSSLSFSHFISHVLSFVNSILLLNQLNQV 60

Query: 481 VVIATGVNSCGYIYDSE--------GGHQGSEVGKMAVVCSEILQKLEEFVEGDMKKVVK 326
           V+IATG N+CGYIYDS           ++ S   KM   CSE+L+ LE+FV+ D      
Sbjct: 61  VIIATGHNTCGYIYDSSLSSVSSSISANESSGDAKMPAFCSEVLKSLEDFVKNDESLSSV 120

Query: 325 EKDRVVXXXXXXXXXXXXXXXLCYIQRVFRSGALHPQPRILCLHGSPDGPEQYVAVMNSI 146
           +    V                CY+QRVFR+G LHPQPRILCLHGSPDGPEQYVAVMNSI
Sbjct: 121 DAGNGVGSSLLSGSLSMAL---CYVQRVFRTGPLHPQPRILCLHGSPDGPEQYVAVMNSI 177

Query: 145 FSAQRSMVHIDSCVVGAQHSAFLQQASYITGGVYLKTQQLDGLYEYLA 2
           FSAQRSMV +DSCV+GAQHSAFLQQASYITGGVYLK Q LDGL++YL+
Sbjct: 178 FSAQRSMVPVDSCVIGAQHSAFLQQASYITGGVYLKPQYLDGLFQYLS 225