BLASTX nr result

ID: Ophiopogon25_contig00011275 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00011275
         (357 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OWM88728.1| hypothetical protein CDL15_Pgr002495 [Punica gran...    52   3e-06
gb|OMP04513.1| hypothetical protein COLO4_09566 [Corchorus olito...    53   8e-06

>gb|OWM88728.1| hypothetical protein CDL15_Pgr002495 [Punica granatum]
          Length = 79

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 28/84 (33%), Positives = 50/84 (59%)
 Frame = +1

Query: 97  IDKRLLDAAKNNNATRIQELVEEDGNILLRVTPEGNTILHLAVTFGWSEIGRGPSMDQKI 276
           +D RL   A   +   ++ L++E  +++LR+TP+GN+I+H+A     S +G GP++ Q+I
Sbjct: 1   MDSRLYRCASRGDVRSLKRLLKETPSLILRLTPQGNSIVHIA-----SRLGHGPAV-QEI 54

Query: 277 CELCPLEILTHGNAKEQTALHSAV 348
           C  C   +LT   A   T  H+++
Sbjct: 55  CRRCK-SLLTKPKADGDTTPHASL 77


>gb|OMP04513.1| hypothetical protein COLO4_09566 [Corchorus olitorius]
          Length = 191

 Score = 52.8 bits (125), Expect = 8e-06
 Identities = 35/93 (37%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
 Frame = +1

Query: 97  IDKRLLDAAKNNNATRIQELVEEDGNILLRVTPEGNTILHLAVTFGW-----SEIGRGPS 261
           +D RLLDAA+  N  +I EL + + NI+   TP+GNT LH+A  FG+       I R PS
Sbjct: 3   MDPRLLDAARCGNQIKIIELEDSESNIIYGTTPQGNTALHVAARFGYYFMVSDIIRRHPS 62

Query: 262 MDQKICELCPLEILTHGNAKEQTALHSAVQ-GH 357
           +  K             N K +T++H A + GH
Sbjct: 63  LVLKT------------NLKGETSIHLAARAGH 83


Top