BLASTX nr result
ID: Ophiopogon25_contig00008398
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00008398
(508 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020265238.1| RNA polymerase sigma factor sigC isoform X2 ... 200 7e-59
ref|XP_020265237.1| RNA polymerase sigma factor sigC isoform X1 ... 200 2e-58
ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC ... 139 1e-35
ref|XP_010909938.2| PREDICTED: RNA polymerase sigma factor sigC ... 130 4e-32
ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC ... 113 4e-26
gb|OVA08500.1| RNA polymerase sigma-70 [Macleaya cordata] 112 1e-25
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ... 104 6e-23
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera] 97 3e-20
ref|XP_009395048.1| PREDICTED: RNA polymerase sigma factor sigC ... 94 4e-19
gb|AKC88686.1| sigma factor [Geranium incanum] 92 2e-18
ref|XP_009367413.1| PREDICTED: RNA polymerase sigma factor sigC ... 90 8e-18
gb|AKC88679.1| sigma factor [California macrophylla] 90 8e-18
ref|XP_020105596.1| RNA polymerase sigma factor sigC [Ananas com... 90 1e-17
gb|KCW79186.1| hypothetical protein EUGRSUZ_C00620 [Eucalyptus g... 88 3e-17
ref|XP_004148429.2| PREDICTED: RNA polymerase sigma factor sigC ... 88 4e-17
gb|KCW79184.1| hypothetical protein EUGRSUZ_C00620 [Eucalyptus g... 88 5e-17
ref|XP_010047303.1| PREDICTED: RNA polymerase sigma factor sigC ... 88 5e-17
ref|XP_008361017.1| PREDICTED: RNA polymerase sigma factor sigC-... 85 6e-17
ref|XP_011019551.1| PREDICTED: RNA polymerase sigma factor sigC ... 87 7e-17
ref|XP_022996944.1| RNA polymerase sigma factor sigC-like isofor... 86 2e-16
>ref|XP_020265238.1| RNA polymerase sigma factor sigC isoform X2 [Asparagus officinalis]
Length = 496
Score = 200 bits (508), Expect = 7e-59
Identities = 110/165 (66%), Positives = 124/165 (75%), Gaps = 1/165 (0%)
Frame = +2
Query: 17 NYKRWAFPIQPSTVPKQSHRHSSALRGREASFESGRSTHHVILEGGEVHQYTSKVYRCYS 196
+YKRWAFPIQPS PKQ RH +AL GREA FESGRSTHH++LEGGEV++ K Y S
Sbjct: 8 SYKRWAFPIQPSA-PKQPLRHPTALTGREALFESGRSTHHLVLEGGEVYRDAPKAYTYSS 66
Query: 197 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASLR-SSSKLQFSLLM 373
GA + S SKI+D+E Y GSYNSS PI MED+ A V SLR SSS +QFSLLM
Sbjct: 67 GATQSTRS-------SKIHDVELYRGSYNSSSPINTMEDSPACVESLRRSSSHIQFSLLM 119
Query: 374 ENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
ENL +IEDIL G D VR+ERDIM+HIGKLGALKLF ACLSRTL A
Sbjct: 120 ENLGEIEDILAGGDAVRLERDIMLHIGKLGALKLFRACLSRTLMA 164
>ref|XP_020265237.1| RNA polymerase sigma factor sigC isoform X1 [Asparagus officinalis]
gb|ONK70030.1| uncharacterized protein A4U43_C05F29530 [Asparagus officinalis]
Length = 543
Score = 200 bits (508), Expect = 2e-58
Identities = 110/165 (66%), Positives = 124/165 (75%), Gaps = 1/165 (0%)
Frame = +2
Query: 17 NYKRWAFPIQPSTVPKQSHRHSSALRGREASFESGRSTHHVILEGGEVHQYTSKVYRCYS 196
+YKRWAFPIQPS PKQ RH +AL GREA FESGRSTHH++LEGGEV++ K Y S
Sbjct: 8 SYKRWAFPIQPSA-PKQPLRHPTALTGREALFESGRSTHHLVLEGGEVYRDAPKAYTYSS 66
Query: 197 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASLR-SSSKLQFSLLM 373
GA + S SKI+D+E Y GSYNSS PI MED+ A V SLR SSS +QFSLLM
Sbjct: 67 GATQSTRS-------SKIHDVELYRGSYNSSSPINTMEDSPACVESLRRSSSHIQFSLLM 119
Query: 374 ENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
ENL +IEDIL G D VR+ERDIM+HIGKLGALKLF ACLSRTL A
Sbjct: 120 ENLGEIEDILAGGDAVRLERDIMLHIGKLGALKLFRACLSRTLMA 164
>ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC [Phoenix dactylifera]
Length = 567
Score = 139 bits (351), Expect = 1e-35
Identities = 88/172 (51%), Positives = 115/172 (66%), Gaps = 13/172 (7%)
Frame = +2
Query: 23 KRWAFPIQPSTVPK---------QSHRHSSALRGREASFESGR-STHHVILEGGEV-HQY 169
KRWAFPIQ S +P Q H SS R REA E G+ S H+ E E+ H+
Sbjct: 10 KRWAFPIQ-SPLPTNPCARLLDHQHHPPSSFFRVREAFSEPGKVSLQHLFTERVELLHRD 68
Query: 170 TSKVYRCYSGALHNIESTSVYEESSKIN-DMEFYSGSYNSSRPITMME-DTSAYVASLRS 343
TSK C A +IE+ S +++++N D + G+++ +RPI MME D+SAY A L +
Sbjct: 69 TSKACVCSFEAPQSIENMSA--DANEVNMDRKLLRGAHDLNRPINMMENDSSAYHARLTA 126
Query: 344 SSKLQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRT 499
SS LQ++LLMENLD+IED+ GTD+VRM+RDI+VHI +LGALKLFHACLSRT
Sbjct: 127 SSSLQYNLLMENLDRIEDVFAGTDLVRMQRDILVHIRRLGALKLFHACLSRT 178
>ref|XP_010909938.2| PREDICTED: RNA polymerase sigma factor sigC [Elaeis guineensis]
Length = 604
Score = 130 bits (327), Expect = 4e-32
Identities = 83/172 (48%), Positives = 108/172 (62%), Gaps = 10/172 (5%)
Frame = +2
Query: 23 KRWAFPIQPSTVPKQ-----SHRHS--SALRGREASFESGR-STHHVILEGGEV-HQYTS 175
KRWAFPIQ H H S R RE SFE G+ S+ + E E+ H+ T
Sbjct: 51 KRWAFPIQSPLATNPCARLLDHHHPPPSFFRVREVSFELGKVSSQRLFTERVELLHRDTL 110
Query: 176 KVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMME-DTSAYVASLRSSSK 352
K Y C A +IE+ S ++ K+N +RPI M+E D+S+Y A L++SS
Sbjct: 111 KAYVCSFEAPQSIENMSA--DACKVN---IDKKLLKENRPINMIEEDSSSYNARLKASSS 165
Query: 353 LQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
LQ+SLLMENL++IED+ GTD+VR++RDI+VHI +LGALKLFHACLSRTL A
Sbjct: 166 LQYSLLMENLERIEDVFAGTDLVRLQRDILVHIRRLGALKLFHACLSRTLMA 217
>ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
ref|XP_010244379.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
Length = 558
Score = 113 bits (283), Expect = 4e-26
Identities = 70/164 (42%), Positives = 98/164 (59%), Gaps = 5/164 (3%)
Frame = +2
Query: 26 RWAFPIQPSTVPKQSHR-HSSALRGREASFESGRSTH-HVILEGGEVHQYTS-KVYRCYS 196
+W FP+Q + S R HSS +R REA FES R + VI E E Q K Y C S
Sbjct: 8 KWVFPVQSHLLSHSSTRNHSSFVRSREAYFESARMSFLSVIPEESETLQKDPLKAYACSS 67
Query: 197 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMM--EDTSAYVASLRSSSKLQFSLL 370
G L + + EF++ Y++ I++ ED+SA++ASL++ FSLL
Sbjct: 68 GTLQPVNNGYAAIGVKMNTSKEFHNSLYDTFEDISIATPEDSSAFLASLQARKISCFSLL 127
Query: 371 MENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTL 502
MEN++KIEDI +D++R+E+ I+V + KLGAL LFHACLSRT+
Sbjct: 128 MENVEKIEDIFVSSDLIRLEKGILVQLEKLGALNLFHACLSRTV 171
>gb|OVA08500.1| RNA polymerase sigma-70 [Macleaya cordata]
Length = 553
Score = 112 bits (279), Expect = 1e-25
Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 6/165 (3%)
Frame = +2
Query: 26 RWAFPIQPSTVPKQSHR-HSSALRGREASFESGR-STHHVILEGGEVH-QYTSKVYRCYS 196
+W FP+Q S S + +SS++RG+E S+ES R S VI + E + K Y C S
Sbjct: 8 KWVFPVQSSFPTNSSTKLYSSSVRGKEVSYESARVSILSVIPDESEPFIKDPFKAYACSS 67
Query: 197 GALHNIESTSV-YEESSKINDMEFYSGSYNSSRPIT--MMEDTSAYVASLRSSSKLQFSL 367
GAL +ES+SV EE + + Y YN IT M ++ S +SLR + FSL
Sbjct: 68 GALEIMESSSVEMEEMKMVINKGSYRTLYNPIDGITIPMQDERSTSASSLRENKTSYFSL 127
Query: 368 LMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTL 502
LM++L+K+E+I D+VR+ERDI++ +GKLGAL LF ACLSR +
Sbjct: 128 LMDSLEKVEEIFVDADLVRLERDILIQLGKLGALNLFRACLSRNV 172
>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
emb|CBI20603.3| unnamed protein product, partial [Vitis vinifera]
Length = 561
Score = 104 bits (260), Expect = 6e-23
Identities = 72/167 (43%), Positives = 99/167 (59%), Gaps = 8/167 (4%)
Frame = +2
Query: 26 RWAFPIQ-PSTVPKQSHRHSSALRGREASFESGR-STHHVILEGGE-VHQYTSKVYRCYS 196
+W FPI P+ S +S+++G+EASF+S R S V E E +++ K + C S
Sbjct: 10 KWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSS 69
Query: 197 GALHNIESTSVYEESSKINDMEFYSGSY-----NSSRPITMMEDTSAYVASLRSSSKLQF 361
GAL E+ E+ K+ + G S PI ED SA VA L++S QF
Sbjct: 70 GALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIG--EDISASVAGLQASKASQF 127
Query: 362 SLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTL 502
SLL+ENLD +E++ ++MVR+ERDIMV +G+LGALKLF CLSRTL
Sbjct: 128 SLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTL 174
>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
Length = 611
Score = 97.1 bits (240), Expect = 3e-20
Identities = 66/152 (43%), Positives = 90/152 (59%), Gaps = 7/152 (4%)
Frame = +2
Query: 68 SHRHSSALRGREASFESGR-STHHVILEGGE-VHQYTSKVYRCYSGALHNIESTSVYEES 241
+H ++G+EASF+S R S V E E +++ K + C SGAL E+ E+
Sbjct: 75 NHETDPYIQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEA 134
Query: 242 SKINDMEFYSGSY-----NSSRPITMMEDTSAYVASLRSSSKLQFSLLMENLDKIEDILG 406
K+ + G S PI ED SA VA L++S QFSLL+ENLD +E++
Sbjct: 135 MKMKIGKCSHGDLFKIVNASQAPIG--EDISASVAGLQASKASQFSLLLENLDILEEMFA 192
Query: 407 GTDMVRMERDIMVHIGKLGALKLFHACLSRTL 502
++MVR+ERDIMV +G+LGALKLF CLSRTL
Sbjct: 193 DSNMVRLERDIMVQLGRLGALKLFQICLSRTL 224
>ref|XP_009395048.1| PREDICTED: RNA polymerase sigma factor sigC [Musa acuminata subsp.
malaccensis]
Length = 570
Score = 94.0 bits (232), Expect = 4e-19
Identities = 53/123 (43%), Positives = 78/123 (63%), Gaps = 2/123 (1%)
Frame = +2
Query: 140 ILEGGEV-HQYTSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDT 316
+L+GG++ H T + G + ++E S K++ + + I MME +
Sbjct: 57 VLDGGKLLHTSTLRANASLFGEIQSVEGISDNAPEVKLDGWSSRI-CLDLDKQIPMMEAS 115
Query: 317 SAYVASLRSSSKLQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFH-ACLS 493
SA+ ASL + L+F+LLMEN+D+IED++ G DMVR+ERDI+ HIG LGALKLFH +C+S
Sbjct: 116 SAFHASLTVKTPLEFNLLMENIDRIEDLIAGADMVRLERDILTHIGSLGALKLFHTSCIS 175
Query: 494 RTL 502
R L
Sbjct: 176 RAL 178
>gb|AKC88686.1| sigma factor [Geranium incanum]
Length = 551
Score = 91.7 bits (226), Expect = 2e-18
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Frame = +2
Query: 26 RWAFPIQPSTVPKQSHRHSSALRGREASFESGRSTHHVIL--EGGEVHQYTSKVYRCYSG 199
+W FPI ++P + +RGRE SF R ++ EG H+ K Y S
Sbjct: 12 KWDFPIHSHSLPTSPFKLPPPVRGRETSFSGTRWLFLPVISEEGENSHRELLKAYSSSSA 71
Query: 200 ALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASLRSSSKLQFSLLMEN 379
A ++ +E + D++ GSYN R M + S+ ASL ++ QF+LLMEN
Sbjct: 72 APQTLD-----DEFLGLGDIQINKGSYNGRRS---MIEVSSSQASLHATKPAQFNLLMEN 123
Query: 380 LDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLS 493
L+ +E+ + ++R+ERDI++ + +LGAL LF++CLS
Sbjct: 124 LNVLEETFADSSVLRLERDILLELSRLGALNLFNSCLS 161
>ref|XP_009367413.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Pyrus x
bretschneideri]
Length = 556
Score = 90.1 bits (222), Expect = 8e-18
Identities = 60/176 (34%), Positives = 98/176 (55%), Gaps = 7/176 (3%)
Frame = +2
Query: 2 YNYNYNYKRWAFPIQPS---TVPKQSHRHSSALRGREASFESGRSTH-HVILEGGEVH-Q 166
+ + N + FP+ S T S +++RGRE SF S R +I E GE+ +
Sbjct: 3 FGFRLNLLKSGFPLHHSHWQTPASPSKLSFTSVRGREGSFNSARLLFLSIISEEGEISGK 62
Query: 167 YTSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSS--RPITMMEDTSAYVASLR 340
T KVY C S + +E + S++ + F S S N++ + + + V +L
Sbjct: 63 DTLKVYSCSSASPQILE-----DGVSEMEQISFRSSSSNTTGNNQMPVADGNFRPVNTLE 117
Query: 341 SSSKLQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
S S F LL++NLD +E+ +D++++E++I++ +GKLGAL+LF ACLSRTLT+
Sbjct: 118 SCSAAHFILLLKNLDALEETFANSDVLKLEKEILLQLGKLGALQLFDACLSRTLTS 173
>gb|AKC88679.1| sigma factor [California macrophylla]
Length = 561
Score = 90.1 bits (222), Expect = 8e-18
Identities = 65/176 (36%), Positives = 98/176 (55%), Gaps = 15/176 (8%)
Frame = +2
Query: 26 RWAFPIQPSTVP----KQSHRHSSALRGREASFESGRSTH-HVILEGGE-VHQYTSKVYR 187
+W FPI ++P K SSA+RGRE SF R + VI E GE H+ K Y
Sbjct: 8 KWDFPIHSHSLPTSPFKLPPHSSSAVRGRETSFSGTRLLYLSVISEDGENSHREPLKAYA 67
Query: 188 CYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYV--------ASLRS 343
S A +++ + ++ DM+ SY+ + +M+ED ++ ASL +
Sbjct: 68 SSSVAPQILDNDFI-----QVGDMQINKRSYSGLQ--SMIEDNFTHLGEGISFSQASLHA 120
Query: 344 SSKLQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACL-SRTLTA 508
S QF+LLMENL+ +E+ +++ R+ERDI++ +G+LGALKLF+ CL SRT A
Sbjct: 121 SRPAQFNLLMENLNILEETFADSNVSRLERDILLQLGRLGALKLFNTCLSSRTFEA 176
>ref|XP_020105596.1| RNA polymerase sigma factor sigC [Ananas comosus]
Length = 544
Score = 89.7 bits (221), Expect = 1e-17
Identities = 55/120 (45%), Positives = 73/120 (60%), Gaps = 3/120 (2%)
Frame = +2
Query: 146 EGGEVHQYTSKVYRCYSGALHNIESTSVYEESSKIN-DMEFYSGSYNSSRPITMMED--T 316
E + + T K YS AL +++ S ++ K N D S + + +M + T
Sbjct: 51 ERANLRRATFKASAYYSTALQGVDNVSDDVKAMKENMDRNCRGESRDVYETVNVMNENVT 110
Query: 317 SAYVASLRSSSKLQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSR 496
+A A L + S LQF+LLMENL IEDIL GTDM+ +ERDI+VHI +LGALKLF ACLSR
Sbjct: 111 AAAAAKLGAKSYLQFNLLMENLHDIEDILSGTDMIMLERDILVHIKQLGALKLFRACLSR 170
>gb|KCW79186.1| hypothetical protein EUGRSUZ_C00620 [Eucalyptus grandis]
Length = 399
Score = 87.8 bits (216), Expect = 3e-17
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Frame = +2
Query: 8 YNYNYKRWAFPIQPSTVPKQSHRHSSALRGREASFESGR--STHHVILEGGEVHQYTSKV 181
+ N K P+Q + R SS++RG+EASF SGR S + E H+Y S+
Sbjct: 5 FRLNLKCCVVPVQSHLLSSSPTRLSSSVRGKEASFSSGRLSSLSSIAEEVEPCHKYHSRS 64
Query: 182 YRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRP---ITMMEDTSAYVASLRSSSK 352
+C S + +E ++++ + GS NS I+ S + +S
Sbjct: 65 CKCSSASAPALEDGLSEMTNTEVTIGKRPFGSINSDPGGIHISHKARNSKGNTTPKSVKA 124
Query: 353 LQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
FSLLM+NL+ +E+ L ++ + +ERDI++ +G+LGALKLFH CLS+ A
Sbjct: 125 AHFSLLMDNLNALEETLADSNALNLERDILLQLGRLGALKLFHTCLSKAFDA 176
>ref|XP_004148429.2| PREDICTED: RNA polymerase sigma factor sigC [Cucumis sativus]
gb|KGN62788.1| hypothetical protein Csa_2G372830 [Cucumis sativus]
Length = 560
Score = 88.2 bits (217), Expect = 4e-17
Identities = 59/169 (34%), Positives = 89/169 (52%), Gaps = 10/169 (5%)
Frame = +2
Query: 26 RWAFPIQPSTVPKQSHRHSS-ALRGREASFESGRSTHH--VILEGGEVHQYTSKVYRCYS 196
RW F IQ ++ + S A +GREA+F SGR + + EG + + T K Y C S
Sbjct: 11 RWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLS 70
Query: 197 GA-------LHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASLRSSSKL 355
A L N+E + + + M + S+RP + +ED + SL +
Sbjct: 71 EAPQTSANDLLNLEEIEMNSGAKSLGPMHY---GIKSTRP-SKVEDNFSSCTSLPTGKAS 126
Query: 356 QFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTL 502
F +LMENLD +E+ + M+ +ERDI++ + KLGAL+ F+ CLSRTL
Sbjct: 127 PFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTL 175
>gb|KCW79184.1| hypothetical protein EUGRSUZ_C00620 [Eucalyptus grandis]
Length = 501
Score = 87.8 bits (216), Expect = 5e-17
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Frame = +2
Query: 8 YNYNYKRWAFPIQPSTVPKQSHRHSSALRGREASFESGR--STHHVILEGGEVHQYTSKV 181
+ N K P+Q + R SS++RG+EASF SGR S + E H+Y S+
Sbjct: 5 FRLNLKCCVVPVQSHLLSSSPTRLSSSVRGKEASFSSGRLSSLSSIAEEVEPCHKYHSRS 64
Query: 182 YRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRP---ITMMEDTSAYVASLRSSSK 352
+C S + +E ++++ + GS NS I+ S + +S
Sbjct: 65 CKCSSASAPALEDGLSEMTNTEVTIGKRPFGSINSDPGGIHISHKARNSKGNTTPKSVKA 124
Query: 353 LQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
FSLLM+NL+ +E+ L ++ + +ERDI++ +G+LGALKLFH CLS+ A
Sbjct: 125 AHFSLLMDNLNALEETLADSNALNLERDILLQLGRLGALKLFHTCLSKAFDA 176
>ref|XP_010047303.1| PREDICTED: RNA polymerase sigma factor sigC [Eucalyptus grandis]
gb|KCW79185.1| hypothetical protein EUGRSUZ_C00620 [Eucalyptus grandis]
Length = 556
Score = 87.8 bits (216), Expect = 5e-17
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
Frame = +2
Query: 8 YNYNYKRWAFPIQPSTVPKQSHRHSSALRGREASFESGR--STHHVILEGGEVHQYTSKV 181
+ N K P+Q + R SS++RG+EASF SGR S + E H+Y S+
Sbjct: 5 FRLNLKCCVVPVQSHLLSSSPTRLSSSVRGKEASFSSGRLSSLSSIAEEVEPCHKYHSRS 64
Query: 182 YRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRP---ITMMEDTSAYVASLRSSSK 352
+C S + +E ++++ + GS NS I+ S + +S
Sbjct: 65 CKCSSASAPALEDGLSEMTNTEVTIGKRPFGSINSDPGGIHISHKARNSKGNTTPKSVKA 124
Query: 353 LQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
FSLLM+NL+ +E+ L ++ + +ERDI++ +G+LGALKLFH CLS+ A
Sbjct: 125 AHFSLLMDNLNALEETLADSNALNLERDILLQLGRLGALKLFHTCLSKAFDA 176
>ref|XP_008361017.1| PREDICTED: RNA polymerase sigma factor sigC-like [Malus domestica]
Length = 233
Score = 84.7 bits (208), Expect = 6e-17
Identities = 57/175 (32%), Positives = 93/175 (53%), Gaps = 6/175 (3%)
Frame = +2
Query: 2 YNYNYNYKRWAFPIQPS---TVPKQSHRHSSALRGREASFESGR-STHHVILEGGEVHQY 169
+ + N + FP+ S S +++RGRE SF S R S +I E GE+
Sbjct: 3 FGFRLNVLKSGFPLHHSHCQAAASPSKLSFTSVRGREGSFNSARLSFLSIISEEGEISGK 62
Query: 170 TSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSS--RPITMMEDTSAYVASLRS 343
+ +S A I V S++ F S S N++ + + + V +L S
Sbjct: 63 DTLKVCSFSSASPQILEDGV----SEMEQTSFRSSSSNTTGNNQMPVADGNFRSVNTLES 118
Query: 344 SSKLQFSLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
S FSLL++NLD +E+ +D++++E++I++ +G+LGAL+LF ACLSRTLT+
Sbjct: 119 CSAAHFSLLLKNLDALEETFANSDVLKLEKEILLQLGRLGALQLFDACLSRTLTS 173
>ref|XP_011019551.1| PREDICTED: RNA polymerase sigma factor sigC [Populus euphratica]
Length = 559
Score = 87.4 bits (215), Expect = 7e-17
Identities = 56/165 (33%), Positives = 95/165 (57%), Gaps = 6/165 (3%)
Frame = +2
Query: 26 RWAFPIQPSTVPKQSHRHSS-ALRGREASFESGR-STHHVILEGGEV-HQYTSKVYRCYS 196
+W P+Q +V + SS + RG EAS R S V+ E G++ ++++ K + C S
Sbjct: 10 KWGSPMQSHSVTNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILNKHSFKSFAC-S 68
Query: 197 GALHNIESTSVYEESSKINDMEFYSGSYNSSR---PITMMEDTSAYVASLRSSSKLQFSL 367
A N+E+ + E K+N + S N++ +++ E+ S LR +FS
Sbjct: 69 SAAQNVENDCLQMERLKMNVDKTSHVSINNTMGNDKVSVEEEISTSHTRLRERMTSRFSF 128
Query: 368 LMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTL 502
L++NLD +E ++ D +++ERDI++ +G+LGAL+ F+ACLSRTL
Sbjct: 129 LLDNLDTLEKLVADLDALKLERDILLQLGRLGALEFFNACLSRTL 173
>ref|XP_022996944.1| RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima]
Length = 556
Score = 86.3 bits (212), Expect = 2e-16
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 8/169 (4%)
Frame = +2
Query: 26 RWAFPIQP-STVPKQSHRHSSALRGREASFESGRSTHH--VILEGGEVHQYTSKVYRCYS 196
+WAF IQ S S A +GREASF SGR + EG + + K Y C S
Sbjct: 10 KWAFQIQTHSRRASPSKLSPYASKGREASFNSGRLSFFSSTCEEGEAISREALKTYTCLS 69
Query: 197 GALHNIESTSVYEESSKIND-----MEFYSGSYNSSRPITMMEDTSAYVASLRSSSKLQF 361
A + + E +IN + GS NS + +ED SL + F
Sbjct: 70 EAPQTLADGLLDLEEKEINSGAKSLSHLHYGSKNSGP--SKVEDNFCSCTSLPTGRASPF 127
Query: 362 SLLMENLDKIEDILGGTDMVRMERDIMVHIGKLGALKLFHACLSRTLTA 508
+LMENLD +E+ + M+ +ERDI++ + KLGAL+ F+ACLSRTL A
Sbjct: 128 DMLMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNACLSRTLKA 176