BLASTX nr result
ID: Ophiopogon25_contig00008312
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon25_contig00008312
(422 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_022869021.1| DNA repair helicase XPB1-like [Olea europaea... 89 7e-20
ref|XP_020245551.1| DNA repair helicase XPB1-like [Asparagus off... 95 8e-20
ref|XP_020270225.1| DNA repair helicase XPB1 isoform X3 [Asparag... 95 8e-20
gb|ONK57484.1| uncharacterized protein A4U43_C09F980 [Asparagus ... 95 8e-20
ref|XP_020270223.1| DNA repair helicase XPB1 isoform X2 [Asparag... 95 8e-20
ref|XP_020270221.1| DNA repair helicase XPB1 isoform X1 [Asparag... 95 8e-20
gb|PIN19680.1| RNA polymerase II transcription initiation [Handr... 93 3e-19
ref|XP_011080928.1| DNA repair helicase XPB1 [Sesamum indicum] 93 4e-19
ref|XP_016500687.1| PREDICTED: DNA repair helicase XPB1-like [Ni... 91 6e-19
gb|KJB20625.1| hypothetical protein B456_003G156900 [Gossypium r... 92 8e-19
gb|KJB20626.1| hypothetical protein B456_003G156900 [Gossypium r... 92 9e-19
gb|KJB20624.1| hypothetical protein B456_003G156900 [Gossypium r... 92 9e-19
ref|XP_023881498.1| general transcription and DNA repair factor ... 92 9e-19
ref|XP_012471790.1| PREDICTED: DNA repair helicase XPB1-like iso... 92 9e-19
ref|XP_017642312.1| PREDICTED: DNA repair helicase XPB1 [Gossypi... 92 9e-19
ref|XP_016716142.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair h... 92 9e-19
ref|XP_012471789.1| PREDICTED: DNA repair helicase XPB1-like iso... 92 9e-19
ref|XP_012471788.1| PREDICTED: DNA repair helicase XPB1-like iso... 92 9e-19
gb|POE74164.1| dna repair helicase xpb1 [Quercus suber] 92 1e-18
ref|XP_018623264.1| PREDICTED: DNA repair helicase XPB1 [Nicotia... 91 2e-18
>ref|XP_022869021.1| DNA repair helicase XPB1-like [Olea europaea var. sylvestris]
Length = 124
Score = 88.6 bits (218), Expect = 7e-20
Identities = 48/73 (65%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG-KKGHGQAKNKPK 246
AGDD VGLEQLEED D IALQK MVYMEY+TG KK HGQAK+K K
Sbjct: 51 AGDDAVGLEQLEEDTDGIALQKARRSAGSMSAMSGASGMVYMEYSTGQKKQHGQAKSKFK 110
Query: 245 DPAKRHHLFRKRF 207
DPAKRHHLF+KRF
Sbjct: 111 DPAKRHHLFKKRF 123
>ref|XP_020245551.1| DNA repair helicase XPB1-like [Asparagus officinalis]
Length = 639
Score = 94.7 bits (234), Expect = 8e-20
Identities = 52/74 (70%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHGQAKNKP 249
AGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG K+KP
Sbjct: 565 AGDDVVGLEQLEEDADDIALQKARRSAGSMSALSGASGMVYMEYNTGQGKKGHG--KSKP 622
Query: 248 KDPAKRHHLFRKRF 207
KDPAKRHHLFRKR+
Sbjct: 623 KDPAKRHHLFRKRY 636
>ref|XP_020270225.1| DNA repair helicase XPB1 isoform X3 [Asparagus officinalis]
Length = 667
Score = 94.7 bits (234), Expect = 8e-20
Identities = 52/74 (70%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHGQAKNKP 249
AGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG K+KP
Sbjct: 593 AGDDVVGLEQLEEDADDIALQKARRSVGSMSALSGASGMVYMEYNTGQGKKGHG--KSKP 650
Query: 248 KDPAKRHHLFRKRF 207
KDPAKRHHLFRKR+
Sbjct: 651 KDPAKRHHLFRKRY 664
>gb|ONK57484.1| uncharacterized protein A4U43_C09F980 [Asparagus officinalis]
Length = 689
Score = 94.7 bits (234), Expect = 8e-20
Identities = 52/74 (70%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHGQAKNKP 249
AGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG K+KP
Sbjct: 615 AGDDVVGLEQLEEDADDIALQKARRSAGSMSALSGASGMVYMEYNTGQGKKGHG--KSKP 672
Query: 248 KDPAKRHHLFRKRF 207
KDPAKRHHLFRKR+
Sbjct: 673 KDPAKRHHLFRKRY 686
>ref|XP_020270223.1| DNA repair helicase XPB1 isoform X2 [Asparagus officinalis]
ref|XP_020270224.1| DNA repair helicase XPB1 isoform X2 [Asparagus officinalis]
Length = 765
Score = 94.7 bits (234), Expect = 8e-20
Identities = 52/74 (70%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHGQAKNKP 249
AGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG K+KP
Sbjct: 691 AGDDVVGLEQLEEDADDIALQKARRSVGSMSALSGASGMVYMEYNTGQGKKGHG--KSKP 748
Query: 248 KDPAKRHHLFRKRF 207
KDPAKRHHLFRKR+
Sbjct: 749 KDPAKRHHLFRKRY 762
>ref|XP_020270221.1| DNA repair helicase XPB1 isoform X1 [Asparagus officinalis]
ref|XP_020270222.1| DNA repair helicase XPB1 isoform X1 [Asparagus officinalis]
gb|ONK66043.1| uncharacterized protein A4U43_C06F3580 [Asparagus officinalis]
Length = 766
Score = 94.7 bits (234), Expect = 8e-20
Identities = 52/74 (70%), Positives = 54/74 (72%), Gaps = 2/74 (2%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG--KKGHGQAKNKP 249
AGDDVVGLEQLEEDADDIALQK MVYMEYNTG KKGHG K+KP
Sbjct: 692 AGDDVVGLEQLEEDADDIALQKARRSVGSMSALSGASGMVYMEYNTGQGKKGHG--KSKP 749
Query: 248 KDPAKRHHLFRKRF 207
KDPAKRHHLFRKR+
Sbjct: 750 KDPAKRHHLFRKRY 763
>gb|PIN19680.1| RNA polymerase II transcription initiation [Handroanthus
impetiginosus]
Length = 766
Score = 93.2 bits (230), Expect = 3e-19
Identities = 49/73 (67%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG-KKGHGQAKNKPK 246
AGDD VGLEQLEEDADDIALQK MVYMEY TG KK HGQ K+KPK
Sbjct: 693 AGDDAVGLEQLEEDADDIALQKARRSVGSMSAMSGASGMVYMEYGTGQKKLHGQTKSKPK 752
Query: 245 DPAKRHHLFRKRF 207
DP+KRHHLF+KRF
Sbjct: 753 DPSKRHHLFKKRF 765
>ref|XP_011080928.1| DNA repair helicase XPB1 [Sesamum indicum]
Length = 766
Score = 92.8 bits (229), Expect = 4e-19
Identities = 49/73 (67%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTG-KKGHGQAKNKPK 246
AGDD VGLEQLEEDADDIALQK MVYMEY+TG KK HGQ K+KPK
Sbjct: 693 AGDDAVGLEQLEEDADDIALQKARRSAGSMSAMSGASGMVYMEYSTGQKKPHGQMKSKPK 752
Query: 245 DPAKRHHLFRKRF 207
DP KRHHLF+KRF
Sbjct: 753 DPNKRHHLFKKRF 765
>ref|XP_016500687.1| PREDICTED: DNA repair helicase XPB1-like [Nicotiana tabacum]
ref|XP_016500745.1| PREDICTED: DNA repair helicase XPB1-like [Nicotiana tabacum]
Length = 351
Score = 90.9 bits (224), Expect = 6e-19
Identities = 47/72 (65%), Positives = 50/72 (69%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQAKNKPKD 243
AGDD VGLEQL+EDADDIALQK MVYMEYNTGKK G K+KPKD
Sbjct: 279 AGDDAVGLEQLDEDADDIALQKARRYVGSMSAMSGAKGMVYMEYNTGKKQGGLIKSKPKD 338
Query: 242 PAKRHHLFRKRF 207
PAKRH LF+KRF
Sbjct: 339 PAKRHQLFKKRF 350
>gb|KJB20625.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 497
Score = 91.7 bits (226), Expect = 8e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 422 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 481
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 482 PKDPSKRHHLFKKRF 496
>gb|KJB20626.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 724
Score = 91.7 bits (226), Expect = 9e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 649 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 708
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 709 PKDPSKRHHLFKKRF 723
>gb|KJB20624.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 747
Score = 91.7 bits (226), Expect = 9e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 672 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 731
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 732 PKDPSKRHHLFKKRF 746
>ref|XP_023881498.1| general transcription and DNA repair factor IIH helicase subunit
XPB1-like [Quercus suber]
Length = 764
Score = 91.7 bits (226), Expect = 9e-19
Identities = 46/72 (63%), Positives = 50/72 (69%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQAKNKPKD 243
AGDD VGLEQLEEDADDIAL K MVYMEY+TG+K GQ K KPKD
Sbjct: 692 AGDDAVGLEQLEEDADDIALHKARRFMGSMSAMSGANGMVYMEYSTGRKMQGQLKGKPKD 751
Query: 242 PAKRHHLFRKRF 207
PAKRHHLF++RF
Sbjct: 752 PAKRHHLFKRRF 763
>ref|XP_012471790.1| PREDICTED: DNA repair helicase XPB1-like isoform X3 [Gossypium
raimondii]
Length = 768
Score = 91.7 bits (226), Expect = 9e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 693 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 752
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 753 PKDPSKRHHLFKKRF 767
>ref|XP_017642312.1| PREDICTED: DNA repair helicase XPB1 [Gossypium arboreum]
Length = 770
Score = 91.7 bits (226), Expect = 9e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 695 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 754
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 755 PKDPSKRHHLFKKRF 769
>ref|XP_016716142.1| PREDICTED: LOW QUALITY PROTEIN: DNA repair helicase XPB1-like
[Gossypium hirsutum]
Length = 770
Score = 91.7 bits (226), Expect = 9e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 695 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 754
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 755 PKDPSKRHHLFKKRF 769
>ref|XP_012471789.1| PREDICTED: DNA repair helicase XPB1-like isoform X2 [Gossypium
raimondii]
gb|KJB20623.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 770
Score = 91.7 bits (226), Expect = 9e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 695 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 754
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 755 PKDPSKRHHLFKKRF 769
>ref|XP_012471788.1| PREDICTED: DNA repair helicase XPB1-like isoform X1 [Gossypium
raimondii]
gb|KJB20627.1| hypothetical protein B456_003G156900 [Gossypium raimondii]
Length = 796
Score = 91.7 bits (226), Expect = 9e-19
Identities = 48/75 (64%), Positives = 52/75 (69%), Gaps = 3/75 (4%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKK---GHGQAKNK 252
AGDD VGLEQLEEDADDIAL K MVYMEY+TGK GHGQ K+K
Sbjct: 721 AGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGANGMVYMEYSTGKHKLMGHGQNKSK 780
Query: 251 PKDPAKRHHLFRKRF 207
PKDP+KRHHLF+KRF
Sbjct: 781 PKDPSKRHHLFKKRF 795
>gb|POE74164.1| dna repair helicase xpb1 [Quercus suber]
Length = 903
Score = 91.7 bits (226), Expect = 1e-18
Identities = 46/72 (63%), Positives = 50/72 (69%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQAKNKPKD 243
AGDD VGLEQLEEDADDIAL K MVYMEY+TG+K GQ K KPKD
Sbjct: 831 AGDDAVGLEQLEEDADDIALHKARRFMGSMSAMSGANGMVYMEYSTGRKMQGQLKGKPKD 890
Query: 242 PAKRHHLFRKRF 207
PAKRHHLF++RF
Sbjct: 891 PAKRHHLFKRRF 902
>ref|XP_018623264.1| PREDICTED: DNA repair helicase XPB1 [Nicotiana tomentosiformis]
ref|XP_009589972.2| PREDICTED: DNA repair helicase XPB1 [Nicotiana tomentosiformis]
Length = 511
Score = 90.9 bits (224), Expect = 2e-18
Identities = 47/72 (65%), Positives = 50/72 (69%)
Frame = -1
Query: 422 AGDDVVGLEQLEEDADDIALQKXXXXXXXXXXXXXXXXMVYMEYNTGKKGHGQAKNKPKD 243
AGDD VGLEQL+EDADDIALQK MVYMEYNTGKK G K+KPKD
Sbjct: 439 AGDDAVGLEQLDEDADDIALQKARRYVGSMSAMSGAKGMVYMEYNTGKKQGGLIKSKPKD 498
Query: 242 PAKRHHLFRKRF 207
PAKRH LF+KRF
Sbjct: 499 PAKRHQLFKKRF 510