BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00005955
         (1711 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP66080.1| Retrovirus-related Pol polyprotein from transposo...   115   1e-24
gb|AAP54013.1| retrotransposon protein, putative, Ty1-copia subc...   109   2e-24
gb|KYP73871.1| Retrovirus-related Pol polyprotein from transposo...   114   2e-24
gb|KYP48154.1| Retrovirus-related Pol polyprotein from transposo...   111   4e-24
gb|KYP50827.1| Retrovirus-related Pol polyprotein from transposo...   108   1e-23
gb|ABA93820.1| retrotransposon protein, putative, Ty1-copia subc...   115   4e-23
gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group]     115   5e-23
gb|KYP59837.1| Retrovirus-related Pol polyprotein from transposo...   108   6e-23
emb|CAE01581.2| OSJNBa0068L06.7 [Oryza sativa Japonica Group]         114   7e-23
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc...   114   8e-23
gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subc...   114   9e-23
gb|ABG22406.1| retrotransposon protein, putative, Ty1-copia subc...   114   1e-22
gb|AAX95047.1| retrotransposon protein, putative, Ty1-copia sub-...   114   1e-22
gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]     114   1e-22
emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]        114   1e-22
gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]               114   1e-22
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]         114   1e-22
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   114   1e-22
gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-...   114   1e-22
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   114   1e-22

>gb|KYP66080.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 316

 Score =  115 bits (287), Expect = 1e-24
 Identities = 61/125 (48%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STME+E +AL+ T TEAEWL++ V+ +PL  KP P +S+H D++S I + K    N K N
Sbjct: 192  STMESEFVALEMTSTEAEWLRNFVANIPLEMKPTPSVSIHYDNQSAIAIAKNKSYNGK-N 250

Query: 1531 RHIQLRYKSVQRLL-GKVVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP*MRSLT 1355
            RHIQLR+  V++LL    + +++VKSE NLADPLTK L + +I ++SR MGL P      
Sbjct: 251  RHIQLRHNIVKQLLKDGTISINYVKSEGNLADPLTKPLGRKMIYETSRGMGLKPIENKQV 310

Query: 1354 VGTQP 1340
            + TQP
Sbjct: 311  MVTQP 315


>gb|AAP54013.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 144

 Score =  109 bits (273), Expect = 2e-24
 Identities = 55/112 (49%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
 Frame = -1

Query: 1705 MEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLNRH 1526
            MEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +RH
Sbjct: 1    MEAELTALDTATVEAEWLRDLLMDLPIVEKPVPAILMNCDNQTVIIKVNSSKDNMKSSRH 60

Query: 1525 IQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            ++ R KSV++L    V+ LD++++ +NLADP TKGLS+++I ++S+EMGL P
Sbjct: 61   VKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNMIDNASKEMGLRP 112


>gb|KYP73871.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 314

 Score =  114 bits (286), Expect = 2e-24
 Identities = 57/111 (51%), Positives = 86/111 (77%), Gaps = 1/111 (0%)
 Frame = -1

Query: 1708 TMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLNR 1529
            TMEAE+IALDTT +E  +LK+L+ +LPL+ KP+PPIS+H DS+  I  +   + N+K  R
Sbjct: 201  TMEAEIIALDTTSSETGFLKNLLYDLPLLNKPIPPISMHCDSQVAIAKVTSKNFNEK-RR 259

Query: 1528 HIQLRYKSVQRLLGKVVI-LDFVKSEKNLADPLTKGLSKSVILDSSREMGL 1379
            H+++R+KS++ L+   +I +DF++ + NLADPLTKGL++  +L+SSREMGL
Sbjct: 260  HLRIRHKSIRNLITHCIISVDFIRFKSNLADPLTKGLTRQQVLESSREMGL 310


>gb|KYP48154.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 223

 Score =  111 bits (277), Expect = 4e-24
 Identities = 57/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STME+E +AL+ T TEAEWL++ ++ +PL  KP P +S+H D++S I + K    N K N
Sbjct: 105  STMESEFVALEMTSTEAEWLRNFLANIPLGMKPTPSVSIHCDNQSAIAIAKNKSYNGK-N 163

Query: 1531 RHIQLRYKSVQRLL-GKVVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RHIQLR+  V++LL    + +++VKSE NLADPLTK L + +I ++SR MGL P
Sbjct: 164  RHIQLRHNIVKQLLKDGTISINYVKSEGNLADPLTKPLGRKMIYETSRGMGLKP 217


>gb|KYP50827.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 188

 Score =  108 bits (271), Expect = 1e-23
 Identities = 58/125 (46%), Positives = 82/125 (65%), Gaps = 1/125 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STME+E +AL+ T TE EWL++ ++ +PL  KP P +S+H D+ S I + K    N K N
Sbjct: 64   STMESEFVALEMTSTETEWLRNFLANIPLGMKPTPSMSIHCDNHSAIAIAKNKSYNGK-N 122

Query: 1531 RHIQLRYKSVQRLL-GKVVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP*MRSLT 1355
            RHIQLR+  V++LL    + +++VKSE NLADPLTK L + +I ++SR MGL P      
Sbjct: 123  RHIQLRHNIVKQLLKDGTISINYVKSEGNLADPLTKPLGRKMIYETSRGMGLKPIENKQV 182

Query: 1354 VGTQP 1340
            +  QP
Sbjct: 183  MVIQP 187


>gb|ABA93820.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1166

 Score =  115 bits (289), Expect = 4e-23
 Identities = 59/114 (51%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1052 STMEAELTALDTATIEAEWLRDLLMDLPIVEKPVPAILMNCDNQTVIVKVDSSKDNMKSS 1111

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGLSP
Sbjct: 1112 RHVKKRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLSP 1165


>gb|AAU90206.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1256

 Score =  115 bits (288), Expect = 5e-23
 Identities = 58/114 (50%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL+ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1142 STMEAELMALDTATVEAEWLRDLLMDLPIVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 1201

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1202 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1255


>gb|KYP59837.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 258

 Score =  108 bits (271), Expect = 6e-23
 Identities = 58/125 (46%), Positives = 83/125 (66%), Gaps = 1/125 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STME+E +AL+ T TE EWL++ ++ +PL  KP P +S+H D++S I + K    N K N
Sbjct: 134  STMESEFVALEMTSTEVEWLRNFLANIPLGMKPTPSVSIHCDNQSAIAIAKNKSYNGK-N 192

Query: 1531 RHIQLRYKSVQRLL-GKVVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP*MRSLT 1355
            RHIQLR+  V++LL    + +++VKSE NLADP TK L + +I ++SR MGL P      
Sbjct: 193  RHIQLRHNIVKQLLKDGTISINYVKSEGNLADPPTKPLVRKMIYETSRGMGLKPIENKQV 252

Query: 1354 VGTQP 1340
            + TQP
Sbjct: 253  MVTQP 257


>emb|CAE01581.2| OSJNBa0068L06.7 [Oryza sativa Japonica Group]
          Length = 873

 Score =  114 bits (286), Expect = 7e-23
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEW++DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 759  STMEAELTALDTATVEAEWMRDLLMDLPIVEKPVPAILMNCDNQTVIVKVNSYKDNMKSS 818

Query: 1531 RHIQLRYKSVQRLLG-KVVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ KNLADP TKGLS++VI ++S+EMGL P
Sbjct: 819  RHVKRRLKSVRKLRNFGVITLDYIQTAKNLADPFTKGLSRNVIDNASKEMGLRP 872


>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1095

 Score =  114 bits (286), Expect = 8e-23
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 981  STMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 1040

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1041 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVINNASKEMGLRP 1094


>gb|ABF94929.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1284

 Score =  114 bits (286), Expect = 9e-23
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1083 STMEAELTALDTATVEAEWLRDLLMDLPIVEKPVPAIVMNCDNQTVIVKVNSSKDNMKSS 1142

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1143 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1196


>gb|ABG22406.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2188

 Score =  114 bits (286), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 613  STMEAELTALDTATVEAEWLRDLLMDLPIVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 672

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 673  RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 726


>gb|AAX95047.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 2266

 Score =  114 bits (286), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 691  STMEAELTALDTATVEAEWLRDLLMDLPIVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 750

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 751  RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 804


>gb|AAT58846.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1229

 Score =  114 bits (285), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1115 STMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 1174

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1175 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1228


>emb|CAE03764.2| OSJNBa0013K16.13 [Oryza sativa Japonica Group]
          Length = 1264

 Score =  114 bits (285), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1150 STMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 1209

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1210 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1263


>gb|AAR13298.1| gag-pol polyprotein [Phaseolus vulgaris]
          Length = 1290

 Score =  114 bits (285), Expect = 1e-22
 Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 1/125 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STME+E +AL+   +EAEWLK+ ++ +PL  KP P +S+H D +S I + K    N K N
Sbjct: 1166 STMESEFVALEMAGSEAEWLKNFLANIPLGMKPTPSVSMHCDCQSAIAIAKNKSYNGK-N 1224

Query: 1531 RHIQLRYKSVQRLL-GKVVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP*MRSLT 1355
            RHIQLR+  V++LL    + +D+VKSE++LADPLTK L + +IL++SR MGL P      
Sbjct: 1225 RHIQLRHNLVKQLLKSGTISIDYVKSERDLADPLTKPLGRKMILETSRGMGLKPLANKQE 1284

Query: 1354 VGTQP 1340
            + TQP
Sbjct: 1285 METQP 1289


>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
          Length = 1302

 Score =  114 bits (285), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1188 STMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 1247

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1301


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  114 bits (285), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1188 STMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 1247

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1301


>gb|AAP20858.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1302

 Score =  114 bits (285), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1188 STMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNSSKDNMKSS 1247

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1301


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  114 bits (285), Expect = 1e-22
 Identities = 58/114 (50%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
 Frame = -1

Query: 1711 STMEAELIALDTTCTEAEWLKDLVSELPLVCKPVPPISLHSDSRSTIELLKQVHVNKKLN 1532
            STMEAEL ALDT   EAEWL+DL+ +LP+V KPVP I ++ D+++ I  +     N K +
Sbjct: 1188 STMEAELTALDTATVEAEWLRDLLMDLPVVEKPVPAILMNCDNQTVIVKVNNSKDNMKSS 1247

Query: 1531 RHIQLRYKSVQRLLGK-VVILDFVKSEKNLADPLTKGLSKSVILDSSREMGLSP 1373
            RH++ R KSV++L    V+ LD++++ +NLADP TKGLS++VI ++S+EMGL P
Sbjct: 1248 RHVKRRLKSVRKLRNSGVITLDYIQTARNLADPFTKGLSRNVIDNASKEMGLRP 1301