BLASTX nr result

ID: Ophiopogon25_contig00001210 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon25_contig00001210
         (635 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020243959.1| DNA polymerase I A, chloroplastic-like isofo...    63   6e-08
gb|ONK61960.1| uncharacterized protein A4U43_C08F35370 [Asparagu...    63   6e-08

>ref|XP_020243959.1| DNA polymerase I A, chloroplastic-like isoform X1 [Asparagus
           officinalis]
 ref|XP_020243960.1| DNA polymerase I A, chloroplastic-like isoform X2 [Asparagus
           officinalis]
          Length = 951

 Score = 63.2 bits (152), Expect = 6e-08
 Identities = 42/107 (39%), Positives = 55/107 (51%)
 Frame = +3

Query: 315 MATGVSTLSGPVRSSLSGXXXXXXXXXXXXXXXXXXVGASLPSKSKPETWLMEANKVKNE 494
           MA GVS+LSGPVR SLSG                       P+      W  E +++K  
Sbjct: 1   MAIGVSSLSGPVRQSLSGPTRPVRASFRFQGFQ----NYHRPASPSGGGWRGETDRIKFL 56

Query: 495 RLAHSVRENLANGRVQFVQKSRGAFDDGSGYSRTGSHQFGNFPNGSW 635
           +L++SV EN+A+GR+       G F+DGSGY R  S QFGN  + SW
Sbjct: 57  KLSNSVSENVAHGRI------LGEFEDGSGYRRDSS-QFGNLTDVSW 96


>gb|ONK61960.1| uncharacterized protein A4U43_C08F35370 [Asparagus officinalis]
          Length = 1056

 Score = 63.2 bits (152), Expect = 6e-08
 Identities = 42/107 (39%), Positives = 55/107 (51%)
 Frame = +3

Query: 315 MATGVSTLSGPVRSSLSGXXXXXXXXXXXXXXXXXXVGASLPSKSKPETWLMEANKVKNE 494
           MA GVS+LSGPVR SLSG                       P+      W  E +++K  
Sbjct: 1   MAIGVSSLSGPVRQSLSGPTRPVRASFRFQGFQ----NYHRPASPSGGGWRGETDRIKFL 56

Query: 495 RLAHSVRENLANGRVQFVQKSRGAFDDGSGYSRTGSHQFGNFPNGSW 635
           +L++SV EN+A+GR+       G F+DGSGY R  S QFGN  + SW
Sbjct: 57  KLSNSVSENVAHGRI------LGEFEDGSGYRRDSS-QFGNLTDVSW 96


Top