BLASTX nr result
ID: Ophiopogon24_contig00038971
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00038971
(385 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru... 176 1e-48
ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect v... 114 7e-27
gb|AIG59921.1| L protein, partial [Strawberry crinkle virus] 113 2e-26
ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus] >gi... 112 3e-26
gb|AAQ97579.1| L protein, partial [Strawberry crinkle virus] 111 6e-26
gb|AAQ97578.1| L protein, partial [Strawberry crinkle virus] 111 6e-26
gb|AAP03645.2| putative RNA-dependent RNA polymerase, partial [S... 110 1e-25
gb|AAQ97580.1| L protein, partial [Strawberry crinkle virus] 108 4e-25
gb|AAQ97582.1| L protein, partial [Strawberry crinkle virus] 108 8e-25
gb|AAQ97583.1| L protein, partial [Strawberry crinkle virus] 107 1e-24
emb|CBL76312.2| RNA-dependent RNA polymerase, partial [Raspberry... 107 3e-24
gb|AAQ97581.1| L protein, partial [Strawberry crinkle virus] 106 3e-24
gb|AFX69571.1| RNA-dependent RNA polymerase, partial [Strawberry... 97 2e-23
gb|AEX97042.1| L protein, partial [Strawberry crinkle virus] 96 3e-23
gb|AEX97041.1| L protein, partial [Strawberry crinkle virus] >gi... 96 4e-23
ref|YP_009352236.1| L protein [Tomato yellow mottle-associated v... 103 6e-23
gb|AEX97040.1| L protein, partial [Strawberry crinkle virus] >gi... 95 6e-23
ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect v... 101 2e-22
gb|AAS47488.1| L protein viral polymerase, partial [Strawberry c... 91 2e-21
ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic ... 97 6e-21
>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
dbj|BAM36035.2| RNA-dependent RNA polymerase [Persimmon virus A]
Length = 2089
Score = 176 bits (446), Expect = 1e-48
Identities = 80/127 (62%), Positives = 110/127 (86%)
Frame = -2
Query: 381 KFLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEK 202
+FLNNTV+D+Y+ES FG KAEEL +I++ SPHHITQ+YGLHRLWGHPIV++RKGMEK
Sbjct: 284 RFLNNTVSDLYLESHIFGSKAEELIQILRGHASPHHITQVYGLHRLWGHPIVDNRKGMEK 343
Query: 201 VRDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEAL 22
V+ IGRK ++RD ++G++ASRYFK++FCKEYRKKYRK+PNI S+S L +L+++N+P AL
Sbjct: 344 VKIIGRKEVTRDINIGKIASRYFKINFCKEYRKKYRKYPNIQPSESNLGKLINSNDPGAL 403
Query: 21 NPAFVED 1
+ + V++
Sbjct: 404 SVSHVDE 410
>ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
gb|AJG39185.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
Length = 2098
Score = 114 bits (285), Expect = 7e-27
Identities = 56/120 (46%), Positives = 75/120 (62%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL NT+ND+ +E + L E+ ++ SPHH+TQLYG+HR+WGHPIV+S KGM KV
Sbjct: 283 FLENTINDLLLEDSRYEHHVILLLELFESVESPHHMTQLYGMHRIWGHPIVDSTKGMSKV 342
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK ISR V R FK+ FC+EYRKK +P + S+L E + N+ L+
Sbjct: 343 MLIGRKEISRSGVVAVDVGRSFKIMFCREYRKKNGVYPKFVDNGSQLCEAMKKNDGSILD 402
>gb|AIG59921.1| L protein, partial [Strawberry crinkle virus]
Length = 632
Score = 113 bits (282), Expect = 2e-26
Identities = 54/120 (45%), Positives = 83/120 (69%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE+L EI++T + H++TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 60 FLSNTIQDLFDDRMIYKEYAEQLIEIIRTVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKV 119
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ + A R FKM F +EYR K+ +P + S+L + N+ A N
Sbjct: 120 ISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENDGSATN 179
>ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus]
gb|AKD44217.1| polymerase protein [Alfalfa dwarf virus]
Length = 2085
Score = 112 bits (281), Expect = 3e-26
Identities = 54/109 (49%), Positives = 76/109 (69%)
Frame = -2
Query: 384 SKFLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGME 205
++FLNNT+ D++ +S + R A E+ +I+Q + H +TQLYGLHR+WGHP+VNS KGME
Sbjct: 270 ARFLNNTLQDLFDDSPTYHRHATEVVKILQDISNLHELTQLYGLHRIWGHPMVNSAKGME 329
Query: 204 KVRDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKL 58
KV IG+K I +D + A R FK+ FCKEY+ K+ +FP I S+L
Sbjct: 330 KVMMIGQKEIIKDDRLAADAGRMFKLLFCKEYKAKHGQFPPIREYPSRL 378
>gb|AAQ97579.1| L protein, partial [Strawberry crinkle virus]
Length = 546
Score = 111 bits (277), Expect = 6e-26
Identities = 53/120 (44%), Positives = 82/120 (68%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE+L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 78 FLSNTIQDLFDDRMIYKEYAEQLIEIIRAVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKV 137
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ + A R FKM F +EYR K+ +P + S+L + N+ A N
Sbjct: 138 ISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENDGSATN 197
>gb|AAQ97578.1| L protein, partial [Strawberry crinkle virus]
Length = 546
Score = 111 bits (277), Expect = 6e-26
Identities = 53/120 (44%), Positives = 82/120 (68%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE+L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 78 FLSNTIQDLFDDRMIYKEYAEQLIEIIRAVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKV 137
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ + A R FKM F +EYR K+ +P + S+L + N+ A N
Sbjct: 138 ISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENDGSATN 197
>gb|AAP03645.2| putative RNA-dependent RNA polymerase, partial [Strawberry crinkle
virus]
Length = 764
Score = 110 bits (276), Expect = 1e-25
Identities = 53/120 (44%), Positives = 81/120 (67%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE+L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 67 FLSNTIQDLFDDRMIYKEYAEQLIEIIRAVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKV 126
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ + A R FKM F +EYR K+ +P + S+L + N A N
Sbjct: 127 ISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENEGSATN 186
>gb|AAQ97580.1| L protein, partial [Strawberry crinkle virus]
Length = 546
Score = 108 bits (271), Expect = 4e-25
Identities = 53/120 (44%), Positives = 81/120 (67%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 78 FLSNTLQDLFDDKMIYKEYAEYLIEIIRPVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKV 137
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ + A R FKM F +EYR K+ +P + S+L + N+ A N
Sbjct: 138 ISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENDGSATN 197
>gb|AAQ97582.1| L protein, partial [Strawberry crinkle virus]
Length = 546
Score = 108 bits (269), Expect = 8e-25
Identities = 53/120 (44%), Positives = 80/120 (66%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 78 FLSNTLQDLFDDKMIYKEYAEYLIEIIRPVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKV 137
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ A R FKM F +EYR K+ +P + S+L + N+ A N
Sbjct: 138 ISIGRKNIIRNSSLSRDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENDGSATN 197
>gb|AAQ97583.1| L protein, partial [Strawberry crinkle virus]
Length = 546
Score = 107 bits (268), Expect = 1e-24
Identities = 53/120 (44%), Positives = 80/120 (66%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE L EI++ + H +TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 78 FLSNTLQDLFDDKMIYKEYAEYLIEIIRPVDNLHSLTQLYGMHRIWGHPMVDSKKGMEKV 137
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ + A R FKM F +EYR K+ +P + S+L + N+ A N
Sbjct: 138 ISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENDGSATN 197
>emb|CBL76312.2| RNA-dependent RNA polymerase, partial [Raspberry vein chlorosis
virus]
Length = 1010
Score = 107 bits (266), Expect = 3e-24
Identities = 45/101 (44%), Positives = 73/101 (72%)
Frame = -2
Query: 381 KFLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEK 202
+FL NT+ D++ +S E ++A+E+ I+ + + HH+TQLYG+HR+WGHP+V KGM++
Sbjct: 41 RFLKNTLQDLFDDSIELHKRAKEIVSILMSVTNIHHLTQLYGMHRIWGHPLVEPLKGMQR 100
Query: 201 VRDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNI 79
V +IGRK+I +D+S+ A R FK+ FC+EY+ K +P +
Sbjct: 101 VINIGRKNIIKDSSLASDAGRMFKLIFCREYKAKNGHYPPV 141
>gb|AAQ97581.1| L protein, partial [Strawberry crinkle virus]
Length = 546
Score = 106 bits (265), Expect = 3e-24
Identities = 52/120 (43%), Positives = 80/120 (66%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL+NT+ D++ + + AE L I++ + H++TQLYG+HR+WGHP+V+S+KGMEKV
Sbjct: 78 FLSNTLQDLFDDKMIYKEYAEYLIXIIRPVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKV 137
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEALN 19
IGRK+I R++S+ + A R FKM F +EYR K+ +P + S+L + N+ A N
Sbjct: 138 ISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLENDGSATN 197
>gb|AFX69571.1| RNA-dependent RNA polymerase, partial [Strawberry crinkle virus]
Length = 106
Score = 96.7 bits (239), Expect = 2e-23
Identities = 46/96 (47%), Positives = 69/96 (71%)
Frame = -2
Query: 321 AEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKVRDIGRKSISRDTSVGEMAS 142
AE+L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV IGRK+I R++S+ + A
Sbjct: 10 AEQLIEILRPVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKVISIGRKNIIRNSSLSQDAG 69
Query: 141 RYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNN 34
R FKM F +EYR K+ +P + S+L + N+
Sbjct: 70 RMFKMLFSREYRSKHGMYPAVHEYPSELVTKLLEND 105
>gb|AEX97042.1| L protein, partial [Strawberry crinkle virus]
Length = 100
Score = 95.9 bits (237), Expect = 3e-23
Identities = 43/81 (53%), Positives = 63/81 (77%)
Frame = -2
Query: 321 AEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKVRDIGRKSISRDTSVGEMAS 142
AE L EI+++ + H++TQLYG+HR+WGHP+V+S+KGMEKV IGRK+I R++S+ + A
Sbjct: 7 AEYLIEIIRSVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKVISIGRKNIIRNSSLSQDAG 66
Query: 141 RYFKMSFCKEYRKKYRKFPNI 79
R FKM F +EYR K+ +P +
Sbjct: 67 RMFKMLFSREYRSKHGMYPAV 87
>gb|AEX97041.1| L protein, partial [Strawberry crinkle virus]
gb|AEX97044.1| L protein, partial [Strawberry crinkle virus]
Length = 100
Score = 95.5 bits (236), Expect = 4e-23
Identities = 43/81 (53%), Positives = 62/81 (76%)
Frame = -2
Query: 321 AEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKVRDIGRKSISRDTSVGEMAS 142
AE L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV IGRK+I R++S+ + A
Sbjct: 7 AEYLIEIIRAVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKVISIGRKNIIRNSSLSQDAG 66
Query: 141 RYFKMSFCKEYRKKYRKFPNI 79
R FKM F +EYR K+ +P +
Sbjct: 67 RMFKMFFSREYRSKHGMYPAV 87
>ref|YP_009352236.1| L protein [Tomato yellow mottle-associated virus]
gb|AQY17505.1| L protein [Tomato yellow mottle-associated virus]
Length = 2085
Score = 103 bits (256), Expect = 6e-23
Identities = 52/119 (43%), Positives = 71/119 (59%)
Frame = -2
Query: 381 KFLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEK 202
+FL NT+ D+ M S A L EI+ + HHI Q+YGLHR WGHP V+S GM K
Sbjct: 274 RFLRNTLKDLRMSSTTHSEYASRLLEIMSRVENKHHIIQIYGLHRSWGHPTVDSEAGMMK 333
Query: 201 VRDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNNPEA 25
+ +IG+K+I +D ++ A R FK+ F KEYR KY +P I S + L + N+P A
Sbjct: 334 LMNIGKKNIIKDDTLSLNAGRMFKLLFSKEYRAKYGAYPKIHDSGTLLATELEQNDPSA 392
>gb|AEX97040.1| L protein, partial [Strawberry crinkle virus]
gb|AEX97043.1| L protein, partial [Strawberry crinkle virus]
Length = 100
Score = 95.1 bits (235), Expect = 6e-23
Identities = 43/81 (53%), Positives = 62/81 (76%)
Frame = -2
Query: 321 AEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKVRDIGRKSISRDTSVGEMAS 142
AE L EI++ + H++TQLYG+HR+WGHP+V+S+KGMEKV IGRK+I R++S+ + A
Sbjct: 7 AEYLIEIIRPVDNLHYLTQLYGMHRIWGHPMVDSKKGMEKVISIGRKNIIRNSSLSQDAG 66
Query: 141 RYFKMSFCKEYRKKYRKFPNI 79
R FKM F +EYR K+ +P +
Sbjct: 67 RMFKMLFSREYRSKHGMYPAV 87
>ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
gb|AJG39191.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
Length = 2079
Score = 101 bits (252), Expect = 2e-22
Identities = 49/100 (49%), Positives = 66/100 (66%)
Frame = -2
Query: 378 FLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEKV 199
FL NT+ D+ ME+ + A +L I++T +PHH+TQLYGLHR WGHPIV+S KGM+KV
Sbjct: 275 FLGNTLTDILMENPKMHNFAMKLVRILETVSNPHHMTQLYGLHRAWGHPIVDSTKGMDKV 334
Query: 198 RDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNI 79
IGRK I T + E + R FK F KE++ + +P I
Sbjct: 335 IRIGRKDIVMRTDLSEDSGRMFKRLFAKEFKARNGMYPPI 374
>gb|AAS47488.1| L protein viral polymerase, partial [Strawberry crinkle virus]
Length = 90
Score = 90.9 bits (224), Expect = 2e-21
Identities = 41/82 (50%), Positives = 60/82 (73%)
Frame = -2
Query: 279 HHITQLYGLHRLWGHPIVNSRKGMEKVRDIGRKSISRDTSVGEMASRYFKMSFCKEYRKK 100
H++TQLYG+HR+WGHP+V+S+KGMEKV IGRK+I R++S+ + A R FKM F +EYR K
Sbjct: 7 HYLTQLYGMHRIWGHPMVDSKKGMEKVISIGRKNIIRNSSLSQDAGRMFKMLFSREYRSK 66
Query: 99 YRKFPNICLSDSKLFELVSNNN 34
+ +P + S+L + N+
Sbjct: 67 HGMYPAVHEYPSELVTKLLEND 88
>ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
sp|Q4W382.1|L_LNYV3 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
AltName: Full=Large structural protein; AltName:
Full=Replicase; AltName: Full=Transcriptase; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
Includes: RecName: Full=GDP
polyribonucleotidyltransferase; Includes: RecName:
Full=Cap-specific mRNA
(nucleoside-2'-O-)-methyltransferase 2
emb|CAG34091.1| putative polymerase [Lettuce necrotic yellows virus]
emb|CAI30426.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
Length = 2068
Score = 97.4 bits (241), Expect = 6e-21
Identities = 48/116 (41%), Positives = 75/116 (64%)
Frame = -2
Query: 381 KFLNNTVNDVYMESREFGRKAEELKEIVQTCLSPHHITQLYGLHRLWGHPIVNSRKGMEK 202
+FL NT+ND+ + ++ G A L + +Q S HH+ QL+GLHR+WGHP+V+ KGMEK
Sbjct: 275 RFLRNTLNDIIDDDKDLGAYAVLLIQRLQQIDSAHHLIQLFGLHRIWGHPLVDPAKGMEK 334
Query: 201 VRDIGRKSISRDTSVGEMASRYFKMSFCKEYRKKYRKFPNICLSDSKLFELVSNNN 34
+ IG+K I R+TS E+ +FK + YR+K+ +PN+ + +L L+ NN+
Sbjct: 335 MIIIGQKDIVRETSRPEVMGVHFKKLMAQGYREKHGVYPNV-KGNGELETLIKNNH 389