BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00038868
         (500 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru...   142   3e-36

>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
 dbj|BAM36035.2| RNA-dependent RNA polymerase [Persimmon virus A]
          Length = 2089

 Score =  142 bits (359), Expect = 3e-36
 Identities = 76/165 (46%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
 Frame = +1

Query: 7    LTCSLGHQVFDSSVRIFQSHVTIERLRKDGRSN-KKRRTETTRKXXXXXXXXXXXXXXXX 183
            L CS GH VF   ++I+QSHVTIERLRKD  S  + ++T   R                 
Sbjct: 1572 LVCSEGHMVFQEKMKIYQSHVTIERLRKDCASGMESKKTSFARTDLIPLPQNTVADLINF 1631

Query: 184  KRLKQRQINWSSTMSELVGNSPILGGNRITTNLTSLRKLYTLPTAAPYKYLEIFSKYMNQ 363
             R++QRQINW S ++     S ++   +  TN TSLRK+Y+LPT+A YKY+E+FS+Y+  
Sbjct: 1632 DRMRQRQINWGSALALSPPGSKVMSDGQSYTNQTSLRKIYSLPTSANYKYMELFSRYLPL 1691

Query: 364  IRGKKVFXXXXXXXXXXXXXXNMTDNEILVSTLLETDDAMPQSYP 498
            I+GK  F              +MT N ILVSTLLETDDAMPQSYP
Sbjct: 1692 IKGKNTFLVGDGLGSTSLLLSDMTGNNILVSTLLETDDAMPQSYP 1736