BLASTX nr result
ID: Ophiopogon24_contig00038746
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00038746
(419 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru... 178 4e-53
ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect v... 129 5e-32
ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic ... 124 3e-30
ref|YP_009352236.1| L protein [Tomato yellow mottle-associated v... 122 2e-29
ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] >gi|... 119 2e-28
gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdov... 119 3e-28
ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect v... 114 8e-27
ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus] >gi... 114 8e-27
ref|YP_009300689.1| RNA-dependent RNA polymerase [Wuhan Insect v... 105 1e-23
gb|AUW34390.1| L [Blacklegged tick rhabdovirus-1] 60 1e-07
ref|YP_009336512.1| RNA-dependent RNA polymerase [Wenling crusta... 56 3e-06
gb|AVM86063.1| L protein [Chimay rhabdovirus] 55 8e-06
>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
dbj|BAM36035.2| RNA-dependent RNA polymerase [Persimmon virus A]
Length = 2089
Score = 178 bits (451), Expect(2) = 4e-53
Identities = 78/100 (78%), Positives = 87/100 (87%)
Frame = +2
Query: 2 KHGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCE 181
KHGALTSSNYLYPTRYHISTD+FTRYSKGGENYDVHFQACLCSIVEQTNIWI+ NR+C
Sbjct: 1229 KHGALTSSNYLYPTRYHISTDHFTRYSKGGENYDVHFQACLCSIVEQTNIWISDQNRQCN 1288
Query: 182 VIPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKKQ 301
I KFQHY Q CYECVNI+DE+F+DIP +IPH+K+
Sbjct: 1289 PISKFQHYKQSCYECVNIVDETFIDIPDKRTSDLIPHRKE 1328
Score = 58.2 bits (139), Expect(2) = 4e-53
Identities = 25/38 (65%), Positives = 34/38 (89%)
Frame = +3
Query: 294 KNNSYLYVKEDDIQDSLSYSPLISLNLNFVTSRMYKLM 407
K N+YLYVKED +QD+L+YSPLISL L ++T++MY+LM
Sbjct: 1327 KENNYLYVKEDQMQDTLAYSPLISLKLTYLTNQMYQLM 1364
>ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
gb|AJG39185.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
Length = 2098
Score = 129 bits (325), Expect = 5e-32
Identities = 61/99 (61%), Positives = 72/99 (72%)
Frame = +2
Query: 2 KHGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCE 181
KHGAL+SSNYLYPTR HISTDNF RYSKGG+NYDVHFQACLCS+ E N+ + + + E
Sbjct: 1228 KHGALSSSNYLYPTRMHISTDNFVRYSKGGDNYDVHFQACLCSLTEWCNMRLMSWLKYEE 1287
Query: 182 VIPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKK 298
IPK H+ Q CY CV +DESFVD+P IP +K
Sbjct: 1288 WIPKVIHFKQTCYCCVTKLDESFVDLPDPLTNRYIPSRK 1326
>ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
sp|Q4W382.1|L_LNYV3 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
AltName: Full=Large structural protein; AltName:
Full=Replicase; AltName: Full=Transcriptase; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
Includes: RecName: Full=GDP
polyribonucleotidyltransferase; Includes: RecName:
Full=Cap-specific mRNA
(nucleoside-2'-O-)-methyltransferase 2
emb|CAG34091.1| putative polymerase [Lettuce necrotic yellows virus]
emb|CAI30426.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
Length = 2068
Score = 124 bits (311), Expect = 3e-30
Identities = 57/99 (57%), Positives = 71/99 (71%)
Frame = +2
Query: 2 KHGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCE 181
KHGAL SSNYLY TRYH+STD FTRY+KG +NYD+ FQA LC+IVE T+ ++ TN+ E
Sbjct: 1220 KHGALCSSNYLYSTRYHVSTDTFTRYAKGAQNYDMLFQANLCAIVETTHQYVLKTNQSKE 1279
Query: 182 VIPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKK 298
K HY Q CY C+N +DESF D+ S+ +IP KK
Sbjct: 1280 PQRKTHHYKQTCYSCINPLDESFYDVKSSKLSQLIPSKK 1318
>ref|YP_009352236.1| L protein [Tomato yellow mottle-associated virus]
gb|AQY17505.1| L protein [Tomato yellow mottle-associated virus]
Length = 2085
Score = 122 bits (306), Expect = 2e-29
Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Frame = +2
Query: 8 GALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCEVI 187
GAL+SSNYLY TR HISTD+ RYSKG EN D H+QA C I+E +N++++ R EV+
Sbjct: 1226 GALSSSNYLYSTRCHISTDSLVRYSKGAENTDFHYQATFCVILELSNMYLSNKIRGEEVV 1285
Query: 188 PKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKKQ----FISVCKRR*YSRFSVLFA 355
+F+H+ QCCYEC++ I+E FVD+ S A+S+IP K + + R R S L+
Sbjct: 1286 ARFKHFRQCCYECIHPIEEDFVDLSSEKALSVIPSFKDNPYLYTPSSRIRVLERISPLYE 1345
Query: 356 TNISELEFRDKQNV 397
+ EL D N+
Sbjct: 1346 LSDRELSHEDYDNI 1359
>ref|YP_002308376.1| L protein [Lettuce yellow mottle virus]
gb|ABV56129.1| L protein [Lettuce yellow mottle virus]
Length = 2068
Score = 119 bits (298), Expect = 2e-28
Identities = 55/100 (55%), Positives = 71/100 (71%)
Frame = +2
Query: 2 KHGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCE 181
KHGAL SSNYL+ TRYH+STD FTRY+KG +NYD+ FQA LC+I+E + +I ATN+
Sbjct: 1220 KHGALCSSNYLFSTRYHVSTDTFTRYAKGSQNYDMLFQANLCAIIEGMHQYIIATNKSNM 1279
Query: 182 VIPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKKQ 301
+ K HY Q CY C+N +DE F DI S+ +IP KK+
Sbjct: 1280 MQQKTHHYKQICYSCINPLDEEFYDIQSSRLPLLIPSKKK 1319
>gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdovirus 1]
Length = 2071
Score = 119 bits (297), Expect = 3e-28
Identities = 53/99 (53%), Positives = 69/99 (69%)
Frame = +2
Query: 2 KHGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCE 181
KHGAL SSNYLY TRYH+STD F+RY+KG +NYD+ FQA LC IVE T++ + N E
Sbjct: 1221 KHGALCSSNYLYSTRYHVSTDTFSRYAKGSQNYDMMFQANLCYIVESTHLDVIDLNASGE 1280
Query: 182 VIPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKK 298
+ PK H+NQ CY C++ +DE+F D+ A +IP K
Sbjct: 1281 ITPKVTHFNQSCYHCISPLDETFHDLRDGEAARVIPSNK 1319
>ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
gb|AJG39191.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
Length = 2079
Score = 114 bits (286), Expect = 8e-27
Identities = 57/135 (42%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Frame = +2
Query: 5 HGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCEV 184
HG LTSS +L+ TRYH+STD TRYSKG EN D+H+QA +VE N+++ R +V
Sbjct: 1223 HGTLTSSCFLFSTRYHLSTDQLTRYSKGAENTDIHYQAVFSWMVELCNMYVTNRIRGGDV 1282
Query: 185 IPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKKQ----FISVCKRR*YSRFSVLF 352
+ KF+HY Q CY C+N I E F+DIPS A +P +K + S R + S LF
Sbjct: 1283 VTKFKHYKQSCYRCINPIPEDFIDIPSGKAADTVPSQKDNPYLYASKATIRISEKISPLF 1342
Query: 353 ATNISELEFRDKQNV 397
+ E + Q++
Sbjct: 1343 VMSPREFSYDQYQSM 1357
>ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus]
gb|AKD44217.1| polymerase protein [Alfalfa dwarf virus]
Length = 2085
Score = 114 bits (286), Expect = 8e-27
Identities = 49/98 (50%), Positives = 68/98 (69%)
Frame = +2
Query: 5 HGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCEV 184
HGALTSS+YL TRYHIS+D+F RY +G +N D+HFQA C +VE+TN+ I R +
Sbjct: 1220 HGALTSSSYLLSTRYHISSDHFYRYCRGSDNTDLHFQALYCYLVERTNLEIVKAIRNQDP 1279
Query: 185 IPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKK 298
I +F+HY QCCY CV + + F+DIP ++ +P +K
Sbjct: 1280 IKRFKHYKQCCYTCVKPVQDDFIDIPDDRVLTAVPSRK 1317
>ref|YP_009300689.1| RNA-dependent RNA polymerase [Wuhan Insect virus 4]
gb|AJG39179.1| RNA-dependent RNA polymerase [Wuhan Insect virus 4]
Length = 2105
Score = 105 bits (262), Expect = 1e-23
Identities = 51/101 (50%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Frame = +2
Query: 5 HGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWI--AATNRRC 178
HG LTSSNYLY TRYH+STDN +YSKGGENYDVHFQ+ LC I E NI + + R
Sbjct: 1243 HGTLTSSNYLYSTRYHMSTDNLFKYSKGGENYDVHFQSMLCLISEFINIEVFQITSGFRS 1302
Query: 179 EVIPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIPHKKQ 301
+P+ H+ + C C +++D+SF DI + IP K Q
Sbjct: 1303 TRLPRVIHWKETCNRCTSVVDDSFSDIKFCGSWRYIPSKPQ 1343
>gb|AUW34390.1| L [Blacklegged tick rhabdovirus-1]
Length = 2204
Score = 60.1 bits (144), Expect = 1e-07
Identities = 29/86 (33%), Positives = 47/86 (54%)
Frame = +2
Query: 5 HGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCEV 184
HG S Y P+ ++STD +YSKG N ++HFQA SI+ ++ + ++ V
Sbjct: 1242 HGGTISILYTRPSFMYVSTDPLVKYSKGSTNANLHFQALFSSIIYFQSMMLDLSD---PV 1298
Query: 185 IPKFQHYNQCCYECVNIIDESFVDIP 262
P HY++ C C++ I E F+ +P
Sbjct: 1299 PPSLSHYHEACLTCISPIFEQFLQLP 1324
>ref|YP_009336512.1| RNA-dependent RNA polymerase [Wenling crustacean virus 10]
gb|APG78823.1| RNA-dependent RNA polymerase [Wenling crustacean virus 10]
Length = 2121
Score = 55.8 bits (133), Expect = 3e-06
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +2
Query: 2 KHGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQ-TNIWIAATNRRC 178
KHG Y + HIST + T YSKGG N +HFQ+ + S++ +N+ I +R
Sbjct: 1256 KHGGTIPLLYQMASFIHISTSSLTAYSKGGGNVTLHFQSLMISLITAFSNLMIHQGSRTI 1315
Query: 179 EVIPKFQHYNQCCYECVNIIDESFVDIPSTSAVSIIP 289
QH +Q C C+ + E V++P + A +P
Sbjct: 1316 G-----QHLHQVCDTCIIPVSEEMVELPESGAQLNMP 1347
>gb|AVM86063.1| L protein [Chimay rhabdovirus]
Length = 2199
Score = 54.7 bits (130), Expect = 8e-06
Identities = 27/90 (30%), Positives = 47/90 (52%)
Frame = +2
Query: 5 HGALTSSNYLYPTRYHISTDNFTRYSKGGENYDVHFQACLCSIVEQTNIWIAATNRRCEV 184
HG S Y P+ ++STD +Y +G N ++HFQA SI+ ++ + ++ +
Sbjct: 1237 HGGTISILYTRPSYMYLSTDTLVKYCRGSANVNLHFQALFSSIIYFQSLMLDLSH---PL 1293
Query: 185 IPKFQHYNQCCYECVNIIDESFVDIPSTSA 274
P HY++ C C++ I E F+ +P A
Sbjct: 1294 PPSLFHYHEECLACISPIFERFLQLPPPPA 1323