BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00038567
         (594 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AVA17452.1| RNA-dependent RNA polymerase [Gigaspora margarita...    60   3e-07

>gb|AVA17452.1| RNA-dependent RNA polymerase [Gigaspora margarita mitovirus 4]
          Length = 1008

 Score = 60.5 bits (145), Expect = 3e-07
 Identities = 52/177 (29%), Positives = 85/177 (48%), Gaps = 7/177 (3%)
 Frame = +3

Query: 33   FDHYLVLGDDVDIAKDSAVSTNYQLACADFQVKIGLHKSLASKSNFFEFANQRLGESGNI 212
            F  Y VLGDDV +A D  V+T Y+   + F V I L KSL S + FF+F ++       +
Sbjct: 656  FKSYRVLGDDVVLA-DKEVATAYRELMSKFGVPISLSKSLVSNNGFFQFVSEVFDNQIPL 714

Query: 213  SPLSFLEEVSSQTWNSRVEFA--SRIKARFGLKMNPSM---LLRLVTTARQWQSLTPEL- 374
            SPLS   + S  T  SR+ FA  + ++  F +    S+   +LRLV    Q++     + 
Sbjct: 715  SPLSLKADYSHNTAESRIMFAVNAGVRGWFDVDKTSSLSFSILRLVCNKDQYRREVERIE 774

Query: 375  SGVRDAIFTRFLKFI-LLGPLNTVWHSTIPLNIDTITNWLQLLQEGLLEPVIKSNED 542
             G   A+  R +  + ++ P    W     L+    +N    L  GL+ P+ ++ ++
Sbjct: 775  KGATSALSHRVISALCIMFPQLQRWGIGNLLSSVMESNKPGALLRGLINPIKETEQN 831