BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00038527
         (694 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009272901.1| RNA-dependent RNA polymerase [Fusarium poae ...    72   1e-10
ref|YP_009259482.1| RNA-dependent RNA polymerase [Cronartium rib...    71   2e-10
gb|AMM45292.1| putative replicase [Macrophomina phaseolina mitov...    70   4e-10
dbj|BAJ23143.2| RNA-directed RNA polymerase [Rhizophagus sp. RF1...    70   5e-10
gb|ASM94099.1| putative RNA-dependent RNA polymerase, partial [B...    68   2e-09
emb|CEZ26304.1| RNA dependent RNA polymerase [Grapevine associat...    68   2e-09
ref|YP_077184.1| putative RNA-dependent RNA polymerase [Gremmeni...    67   3e-09
ref|YP_009182162.1| RNA dependent RNA polymerase [Grapevine asso...    67   4e-09
dbj|BAN85985.1| putative RNA-dependent RNA polymerase [Rhizophag...    67   4e-09
gb|AAN05635.1| putative RNA-dependent RNA polymerase [Gremmeniel...    67   5e-09
emb|CCD32685.2| RNA dependent RNA polymerase [Gremmeniella mitov...    66   7e-09
gb|ALD89128.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    66   9e-09
gb|AGW51760.1| RNA-dependent RNA polymerase-like protein [Mitovi...    66   9e-09
gb|ALD89124.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    65   2e-08
gb|AVA17449.1| RNA-dependent RNA polymerase [Gigaspora margarita...    65   2e-08
emb|CEZ26296.1| RNA dependent RNA polymerase [Botrytis cinerea m...    65   2e-08
ref|YP_002284334.2| RNA-dependent RNA polymerase [Botrytis ciner...    65   2e-08
emb|CAJ32468.1| RNA-dependent RNA polymerase [Ophiostoma mitovir...    65   2e-08
gb|AKN79252.1| RNA-dependent RNA polymerases [Alternaria brassic...    64   3e-08
gb|AHI43534.1| RNA-dependent RNA polymerase [Fusarium circinatum...    64   3e-08

>ref|YP_009272901.1| RNA-dependent RNA polymerase [Fusarium poae mitovirus 4]
 dbj|BAV56292.1| RNA-dependent RNA polymerase [Fusarium poae mitovirus 4]
          Length = 689

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 42/98 (42%), Positives = 57/98 (58%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           LG+L       GK+R  AI D WTQ  + P+H  IF  LK  +  D TFDQ   ++   +
Sbjct: 259 LGKLSEKKEAAGKVRVFAITDVWTQSFLSPLHHAIFGFLKR-IPMDGTFDQLKPLNALLS 317

Query: 573 RNLRPHWSFDLSAATDSIPITLYIHVLAPFFVCEGESY 686
           R L+  +S+DLSAATD +PITL   +L+  F   GES+
Sbjct: 318 RGLKNFYSYDLSAATDRLPITLQEQILSRLF---GESF 352


>ref|YP_009259482.1| RNA-dependent RNA polymerase [Cronartium ribicola mitovirus 3]
 gb|AMQ67416.1| RNA-dependent RNA polymerase [Cronartium ribicola mitovirus 3]
          Length = 713

 Score = 70.9 bits (172), Expect = 2e-10
 Identities = 40/103 (38%), Positives = 56/103 (54%)
 Frame = +3

Query: 378 FSKPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVV 557
           +    LGRL    +P GK R +AI DYW+Q  +FP+H  IF LLK  +  D TF Q+  +
Sbjct: 237 YKSKYLGRLAVIPSPEGKSRVIAIGDYWSQNVLFPLHNKIFGLLKR-IPQDLTFAQEQGL 295

Query: 558 DEYWARNLRPHWSFDLSAATDSIPITLYIHVLAPFFVCEGESY 686
            +        +WS DL +ATD  PI L   +++  +   GESY
Sbjct: 296 SKIKKDRDHSYWSLDLKSATDRFPIELQRRIISYIY---GESY 335


>gb|AMM45292.1| putative replicase [Macrophomina phaseolina mitovirus 3]
          Length = 1029

 Score = 70.1 bits (170), Expect = 4e-10
 Identities = 38/85 (44%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           LG+L       GK+R  A+ D WTQ A++P+HE IF++LK  V  D TFDQ   +     
Sbjct: 453 LGKLGTKEEAAGKVRVFAMVDAWTQWALYPIHELIFKILKD-VPMDGTFDQTAPL----- 506

Query: 573 RNLRPH---WSFDLSAATDSIPITL 638
           +++RPH   WS DLSAATD +P+++
Sbjct: 507 KHVRPHSGFWSLDLSAATDRLPLSI 531


>dbj|BAJ23143.2| RNA-directed RNA polymerase [Rhizophagus sp. RF1 mitovirus]
          Length = 820

 Score = 69.7 bits (169), Expect = 5e-10
 Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
 Frame = +3

Query: 360 AKECLNFSKPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATF 539
           A E +    PILG+L      GGK R VA  DYWTQ+A+ P+H  I   L+AL   D TF
Sbjct: 252 AAEAIPNLSPILGKLSVIEEWGGKARIVAQMDYWTQMALTPLHNTINHFLRAL-KEDGTF 310

Query: 540 DQQGV---VDEYWARNLRPHWSFDLSAATDSIPITLYIHVLA 656
           +Q  +   V ++ A      +SFDL+AATD +PIT    +L+
Sbjct: 311 NQHAIAERVRQWTADPSMEVFSFDLTAATDRVPITFQESILS 352


>gb|ASM94099.1| putative RNA-dependent RNA polymerase, partial [Barns Ness serrated
           wrack narna-like virus 3]
          Length = 626

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 61/225 (27%), Positives = 100/225 (44%), Gaps = 15/225 (6%)
 Frame = +3

Query: 3   QLGKIIRSAGANLRGSTSLFSIILDAKAWMSRAINDNHVYKWFEMHGDATACALMDAISR 182
           +L +  + AG   +      S++ D + ++SR  + N   K F M       +    + +
Sbjct: 51  KLDRTKQLAGITAKPVKGYDSLLNDFEEFLSRFFSVNRNKKLFRMAKKPIKVSYGSFLRK 110

Query: 183 EQHFPTGGLLNRQQELYPSPPFKTKEEENEWNKSIRDPLLKELKDEGSLS---------- 332
            +  P G +L    E              +    IR+ LL+ L D G+            
Sbjct: 111 GKSGPNGKMLESTFE--------------DAAAVIREGLLQPLTDLGNCIVALSSKGRDV 156

Query: 333 GYIMASWKLAKECLN---FSKPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFE 503
           GY      L KE LN   F+K    RL +FA  GGK RT+ + D ++Q  + P+H+++F 
Sbjct: 157 GYSPTFLNLLKEELNEDDFAKAKSSRLSSFATRGGKTRTIGVVDQYSQTVLKPIHDHLFS 216

Query: 504 LLKALVGNDATFDQQGVVDEYWARNLRPHW--SFDLSAATDSIPI 632
           +L+ ++  D TFDQ   V+     + +  +  S DLS+ATD  PI
Sbjct: 217 ILR-VIPEDCTFDQYKGVEALMEFSTQGSYLASLDLSSATDRFPI 260


>emb|CEZ26304.1| RNA dependent RNA polymerase [Grapevine associated narnavirus-1]
          Length = 719

 Score = 67.8 bits (164), Expect = 2e-09
 Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
 Frame = +3

Query: 372 LNFSKPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQ- 548
           LN  K ILGRL       GK R VAI +YW Q+ +FP+H  +F LLK  +  D TFDQ+ 
Sbjct: 249 LNKRKAILGRLSVVFDQAGKARVVAITNYWIQMCLFPLHNKLFSLLKR-IDMDGTFDQEK 307

Query: 549 --------GVVDEYWARNLRPHWSFDLSAATDSIPITLYIHVLAPFFVC 671
                     ++     + + +  FDLSAATD +P+ + + +L     C
Sbjct: 308 PLKRLIFLHKMNSLMGSDKQLYHCFDLSAATDRLPLQIQVDILNQLGFC 356


>ref|YP_077184.1| putative RNA-dependent RNA polymerase [Gremmeniella abietina
           mitochondrial RNA virus S2]
 gb|AAT48883.1| putative RNA-dependent RNA polymerase [Gremmeniella abietina
           mitochondrial RNA virus S2]
          Length = 741

 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 49/119 (41%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
 Frame = +3

Query: 324 SLSG--YI--MASWKLAKECLN-----FSKPILGRLFNFAAPGGKLRTVAICDYWTQLAM 476
           SLSG  Y+  + +W   K+  N     +SK  LG L     P  K+R VA+ DY TQL +
Sbjct: 199 SLSGVDYLTKIMNWTWLKDLGNKNNNKWSKQFLGSLSLIYDPECKVRIVAMLDYTTQLFL 258

Query: 477 FPVHEYIFELLKALVGNDATFDQQGVVDEYWARNLRPHWSFDLSAATDSIPITLYIHVL 653
            P+H  +F+LLK L   D TF Q  + D  W  N    WS DL+AATD  PI+L   +L
Sbjct: 259 RPIHNDLFKLLKKL-PQDRTFTQNPLND--WENNEHSFWSIDLTAATDRFPISLQRRLL 314


>ref|YP_009182162.1| RNA dependent RNA polymerase [Grapevine associated narnavirus-1]
 emb|CEZ26299.1| RNA dependent RNA polymerase [Grapevine associated narnavirus-1]
          Length = 719

 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
 Frame = +3

Query: 372 LNFSKPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQ- 548
           LN  K ILGRL       GK R VAI +YW Q+ +FP+H+ +F LL+  +  D TFDQ+ 
Sbjct: 249 LNKRKAILGRLSVVFDQAGKARVVAITNYWIQMCLFPLHKKLFSLLRR-IDMDGTFDQEK 307

Query: 549 --------GVVDEYWARNLRPHWSFDLSAATDSIPITLYIHVLAPFFVC 671
                     ++     + + +  FDLSAATD +P+ + + +L     C
Sbjct: 308 PLKRLVFLHKMNSLMGSDKQLYHCFDLSAATDRLPLQIQVDILNQLGFC 356


>dbj|BAN85985.1| putative RNA-dependent RNA polymerase [Rhizophagus sp. HR1
           mitovirus-like ssRNA]
          Length = 835

 Score = 67.0 bits (162), Expect = 4e-09
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
 Frame = +3

Query: 396 GRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGV---VDEY 566
           GRL +F   GGK R VAI DYWTQ+ + P+H  IF  L   + +D TFDQ      V  +
Sbjct: 276 GRLHSFEEWGGKTRVVAIVDYWTQILLTPLHNAIFHFL-GNIPSDGTFDQDAACARVAAF 334

Query: 567 WARNLRPHWSFDLSAATDSIPITLYIHVL 653
            A      +S+DL+AATD +PI++   +L
Sbjct: 335 TADANAEVYSYDLTAATDRLPISIQREIL 363


>gb|AAN05635.1| putative RNA-dependent RNA polymerase [Gremmeniella mitovirus S1]
          Length = 741

 Score = 66.6 bits (161), Expect = 5e-09
 Identities = 49/119 (41%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
 Frame = +3

Query: 324 SLSG--YI--MASWKLAKECLN-----FSKPILGRLFNFAAPGGKLRTVAICDYWTQLAM 476
           SLSG  Y+  + +W   K+  N     +SK  LG L     P  K+R VA+ DY TQL +
Sbjct: 199 SLSGVDYLTKIMNWTWLKDLGNKKNNKWSKQFLGSLSLIYDPECKVRIVAMLDYTTQLFL 258

Query: 477 FPVHEYIFELLKALVGNDATFDQQGVVDEYWARNLRPHWSFDLSAATDSIPITLYIHVL 653
            P+H  +F+LLK L   D TF Q  + D  W  N    WS DL+AATD  PI+L   +L
Sbjct: 259 RPIHNDLFKLLKKL-PQDRTFTQNPLND--WEDNEHSFWSIDLTAATDRFPISLQRRLL 314


>emb|CCD32685.2| RNA dependent RNA polymerase [Gremmeniella mitovirus]
          Length = 741

 Score = 66.2 bits (160), Expect = 7e-09
 Identities = 41/92 (44%), Positives = 52/92 (56%)
 Frame = +3

Query: 378 FSKPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVV 557
           +SK  LG L     P  K+R VA+ DY TQL + P+H  +F+LLK L   D TF Q  + 
Sbjct: 226 WSKQFLGSLSLIYDPECKVRIVAMLDYTTQLFLRPIHNDLFKLLKKL-PQDRTFTQDPLN 284

Query: 558 DEYWARNLRPHWSFDLSAATDSIPITLYIHVL 653
           D  W  N    WS DL+AATD  PI+L   +L
Sbjct: 285 D--WEDNEHSFWSIDLTAATDRFPISLQRRLL 314


>gb|ALD89128.1| RNA-dependent RNA polymerase, partial [Rhizoctonia solani mitovirus
           9]
          Length = 524

 Score = 65.9 bits (159), Expect = 9e-09
 Identities = 36/94 (38%), Positives = 53/94 (56%)
 Frame = +3

Query: 375 NFSKPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGV 554
           + +KP LG+L       GK+R  A+ D WTQ  + P+H+ IF+ + A +  D T DQ   
Sbjct: 299 SINKPFLGKLSLKEESAGKVRVFAMVDPWTQWLLKPLHDTIFDYILASIPQDGTRDQLAP 358

Query: 555 VDEYWARNLRPHWSFDLSAATDSIPITLYIHVLA 656
           V    +R  +  +S DLSAATD +P+ L   +LA
Sbjct: 359 VKSLISRKPKSLFSLDLSAATDRLPLWLQKAILA 392


>gb|AGW51760.1| RNA-dependent RNA polymerase-like protein [Mitovirus AEF-2013]
 gb|AGW51778.1| RNA-dependent RNA polymerase-like protein [Mitovirus AEF-2013]
          Length = 670

 Score = 65.9 bits (159), Expect = 9e-09
 Identities = 33/75 (44%), Positives = 50/75 (66%)
 Frame = +3

Query: 429 KLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWARNLRPHWSFDLS 608
           K R + I DYW+Q A++P+H++IF +L+AL G D TFDQ     +  ++   P++S DLS
Sbjct: 242 KTRVIGIFDYWSQSALYPLHKWIFTILRALPG-DCTFDQNSFRSKLPSKG--PYFSMDLS 298

Query: 609 AATDSIPITLYIHVL 653
           +ATD  P++L   VL
Sbjct: 299 SATDRFPLSLQTKVL 313


>gb|ALD89124.1| RNA-dependent RNA polymerase, partial [Rhizoctonia solani mitovirus
           5]
          Length = 563

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           +GRL     P GK+R  A+C  W Q  + P+H  +F+ LK+L  ND TFDQ+  V    A
Sbjct: 403 VGRLALKEEPAGKVRVFAMCTLWDQAILEPLHSMLFKFLKSL-PNDGTFDQELSVKRCLA 461

Query: 573 RNLRPHWSF--DLSAATDSIPITLYIHVL 653
           ++   + SF  DLSAATD +P++L   +L
Sbjct: 462 KSTLTNNSFGYDLSAATDRLPVSLQAEIL 490


>gb|AVA17449.1| RNA-dependent RNA polymerase [Gigaspora margarita mitovirus 1]
          Length = 794

 Score = 65.1 bits (157), Expect = 2e-08
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 8/105 (7%)
 Frame = +3

Query: 348 SW-KLAKECLNFS----KPILGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLK 512
           SW +L +E   +S    +   GR+     P GK+R  A+ DYWTQ ++ P+H+ +F +LK
Sbjct: 265 SWYRLVEESARYSHFCSRMSRGRISFKDEPAGKVRAFAMVDYWTQCSLKPLHDLLFSILK 324

Query: 513 ALVGNDATFDQQGVVDEYWA-RNLRPH--WSFDLSAATDSIPITL 638
             +  D TFDQ     E  + R L     WS DLSAATD  P+ L
Sbjct: 325 E-IPQDGTFDQMAPAKELLSVRRLATETWWSLDLSAATDRFPLAL 368


>emb|CEZ26296.1| RNA dependent RNA polymerase [Botrytis cinerea mitovirus 1]
          Length = 738

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 34/87 (39%), Positives = 51/87 (58%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           +G+L       GK+R  A+ D WTQ  + P+H+ IF +++ L   D TFDQ   +D    
Sbjct: 283 IGKLSTKEEAAGKVRVFAMVDIWTQSILNPLHKKIFSIIRELP-TDGTFDQLKPLDRLHE 341

Query: 573 RNLRPHWSFDLSAATDSIPITLYIHVL 653
            + +  +SFDLSAATD +P+TL   +L
Sbjct: 342 LSTQDRFSFDLSAATDRLPLTLQKDIL 368


>ref|YP_002284334.2| RNA-dependent RNA polymerase [Botrytis cinerea mitovirus 1]
 gb|ABQ65153.3| RNA-dependent RNA polymerase [Botrytis cinerea mitovirus 1]
          Length = 738

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 34/87 (39%), Positives = 51/87 (58%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           +G+L       GK+R  A+ D WTQ  + P+H+ IF +++ L   D TFDQ   +D    
Sbjct: 283 IGKLSTKEEAAGKVRVFAMVDIWTQSILNPLHKKIFSIIRELP-TDGTFDQLKPLDRLHE 341

Query: 573 RNLRPHWSFDLSAATDSIPITLYIHVL 653
            + +  +SFDLSAATD +P+TL   +L
Sbjct: 342 LSTQDRFSFDLSAATDRLPLTLQKDIL 368


>emb|CAJ32468.1| RNA-dependent RNA polymerase [Ophiostoma mitovirus 3b]
          Length = 738

 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 34/87 (39%), Positives = 51/87 (58%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           +G+L       GK+R  A+ D WTQ  + P+H+ IF +++ L   D TFDQ   +D    
Sbjct: 283 IGKLSTKEEAAGKVRVFAMVDIWTQSILNPLHKKIFSIIRELP-TDGTFDQLKPLDRLHE 341

Query: 573 RNLRPHWSFDLSAATDSIPITLYIHVL 653
            + +  +SFDLSAATD +P+TL   +L
Sbjct: 342 LSTQDRFSFDLSAATDRLPLTLQKDIL 368


>gb|AKN79252.1| RNA-dependent RNA polymerases [Alternaria brassicicola mitovirus]
          Length = 719

 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 41/91 (45%), Positives = 50/91 (54%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           LG+L     P  KLR VAI DY+TQL + P+HE IF+ L+ L   D TF Q       W 
Sbjct: 225 LGKLAFIYDPECKLRIVAIVDYYTQLFLKPIHEKIFKKLENL-PQDRTFTQDPF--NIWK 281

Query: 573 RNLRPHWSFDLSAATDSIPITLYIHVLAPFF 665
            +    WS DLS+ATD  PITL   +L   F
Sbjct: 282 DDGNRFWSLDLSSATDRYPITLQRRLLEQMF 312


>gb|AHI43534.1| RNA-dependent RNA polymerase [Fusarium circinatum mitovirus 2-1]
          Length = 724

 Score = 64.3 bits (155), Expect = 3e-08
 Identities = 34/88 (38%), Positives = 49/88 (55%)
 Frame = +3

Query: 393 LGRLFNFAAPGGKLRTVAICDYWTQLAMFPVHEYIFELLKALVGNDATFDQQGVVDEYWA 572
           LG++     P GK R +AI DY+TQLA+  +H+  F++++ L   D TF+Q       W 
Sbjct: 229 LGKIEVIRDPEGKFRLIAIVDYYTQLALKKLHDQCFKVIRNLKETDRTFNQS--PHHNWE 286

Query: 573 RNLRPHWSFDLSAATDSIPITLYIHVLA 656
            N    WS DLS+ATD  P  L   +L+
Sbjct: 287 SNQHKFWSLDLSSATDRFPRKLQARLLS 314