BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00038424
         (1796 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AVA17450.1| RNA-dependent RNA polymerase [Gigaspora margarita...   100   5e-18
gb|AVA17451.1| RNA-dependent RNA polymerase [Gigaspora margarita...    80   6e-12
gb|ALD89126.1| RNA-dependent RNA polymerase, partial [Rhizoctoni...    65   4e-07

>gb|AVA17450.1| RNA-dependent RNA polymerase [Gigaspora margarita mitovirus 2]
          Length = 986

 Score = 99.8 bits (247), Expect = 5e-18
 Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 2/233 (0%)
 Frame = -1

Query: 863 DWDIQAQRPYVIVDPYDPRGLLYLSRGEYLLQSRVALANDLTLIVVARPGDTPPVPISSS 684
           DW       Y IVDP +PR L+YL   ++    +V L+N   ++V+AR G+  P     S
Sbjct: 44  DWFKVKAGFYCIVDPTNPRELIYLGEKDFRDFIKVMLSNREPMVVLARAGENQP---KDS 100

Query: 683 QNSPPHGGPQGSTRFFQNRANRLAWKDFVRLRRFSVSNVKVRDGMVIVSPETIERAVIV- 507
           +   P      ST FF++      ++ + +  R   S  ++ +G ++V  E   + +I  
Sbjct: 101 EILTPKPKSPHSTVFFRS------FRVYSKFLRALWS--EMWEGKLVVPLERNLKFIICN 152

Query: 506 WARQLFHYSGVTAPERRLS-GLFNLTRTLRTILRNNGALDLTKRLKIALFSVYSYLGGNP 330
           W + L H+ G ++  R  S GL  +++ L  +L++ GA  LT  LK++  ++  YL G P
Sbjct: 153 WGKTLLHWLGTSSSSRAQSQGLIQVSKYLMVVLKHRGATGLTIFLKVSFIALNKYLAGEP 212

Query: 329 LKSTQALGIRVRLSNGLPYMIPRAHRDLIRSGNLVWIRIWVSILNIYRSFNVK 171
           LKST  L   +RL  GLP  +P   R  IR  +   IR+W S+L  Y+    K
Sbjct: 213 LKSTFPLKCGMRLQGGLPSWLPAPVRLAIRQKSYKVIRLWSSLLYTYKGMYAK 265


>gb|AVA17451.1| RNA-dependent RNA polymerase [Gigaspora margarita mitovirus 3]
          Length = 1010

 Score = 80.5 bits (197), Expect = 6e-12
 Identities = 84/293 (28%), Positives = 128/293 (43%), Gaps = 27/293 (9%)
 Frame = -1

Query: 836 YVIVDPYDPRGLLYLSRGEYL-LQSRVALANDLTLIVVARPGD----TPPVPISSSQNSP 672
           YV+VDP +   LL LS   Y  L  +     +L+LI++  P D    +       +  SP
Sbjct: 67  YVVVDPMNKSSLLALSPMAYQKLLGQTMSTENLSLILLLSPLDELERSAAEASPEATKSP 126

Query: 671 PHGGPQGSTRFFQNR------ANRL-------AWKDFVRLRRFSVSNVKVRDGMVIVS-P 534
           P  G          R        RL       +W      + +     ++ DG +I+S P
Sbjct: 127 PLKGFVNKISLDLERLKERIQTGRLTKGVRWPSWSLGYPFQGYQGLGCRLSDGRLILSRP 186

Query: 533 ETIERAVIVWARQLFHYSGVTAPERRLSGLFNLTRTLRTILRNNGALDLTKRLKIALFSV 354
                    WA +L  +SG +   R  S L+ +T  L+T+L+++G   L   LK +   V
Sbjct: 187 SEFSAIFQRWASRLHFWSGSSRGRRFRSSLWVVTNHLQTVLKHSGPYGLALYLKASYNIV 246

Query: 353 YSYLGGNPLKST-QALGIRVRLSNGLPYMIPRAHRDLIRSGNLVWIRIWVSILNIYRSFN 177
             Y+ G P +      G+ V+L NGLP  +PR  R  IRSG+   +RI +S+L  Y+ F 
Sbjct: 247 LRYVAGQPFEHAFTQCGVPVQLQNGLPKFLPREWRVAIRSGSPRLLRIVLSLLYSYKGFK 306

Query: 176 VKLPDP-ETAYKTIRKPLPAFYPN----FEK--FEYFARYVFPLLVKGQGELH 39
              P P    +K I   L A  P+    F K  FE+    + P+    +GEL+
Sbjct: 307 ATKPKPVAEIFKNI--SLAAHQPDDIIAFSKFCFEFLKNRISPI---SEGELN 354


>gb|ALD89126.1| RNA-dependent RNA polymerase, partial [Rhizoctonia solani mitovirus
           7]
          Length = 871

 Score = 65.1 bits (157), Expect = 4e-07
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
 Frame = -1

Query: 521 RAVIVWARQLFHYSGVTAPERRLSGLFNLTRTLRTILRNNGALDLTKRLKIALFSVYSYL 342
           RA++ +  ++   +G+     R+  +    +    + RNNGA      LK+    +    
Sbjct: 9   RALVRYFVRMLPITGLQTTSARVRAIVVFLKLTSILFRNNGAKGACLILKVHAVILQQAC 68

Query: 341 GGNPLKSTQALGIRV-RLSNGLPYMIPRAHRDLIRSGNLVWIRIWVSILNIYR 186
           GG+ +K    L  RV R + GLP  IP  HR+LIRSG+L  IR+W+++ N+YR
Sbjct: 69  GGHIVKDLTELKFRVSRTNRGLPRAIPVQHRELIRSGHLETIRLWLTLFNLYR 121