BLASTX nr result
ID: Ophiopogon24_contig00038233
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00038233
(859 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru... 256 e-133
ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect v... 187 5e-92
ref|YP_009352236.1| L protein [Tomato yellow mottle-associated v... 173 9e-83
gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdov... 172 1e-81
ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic ... 160 3e-75
emb|CBL76312.2| RNA-dependent RNA polymerase, partial [Raspberry... 158 6e-75
ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] >gi|... 155 4e-74
ref|YP_009300689.1| RNA-dependent RNA polymerase [Wuhan Insect v... 152 1e-70
ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect v... 180 2e-47
ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus] >gi... 159 3e-40
gb|ARS22495.1| putative L protein [Maize associated rhabdovirus] 101 4e-34
ref|YP_009362280.1| RNA-dependent RNA polymerase [Colocasia bobo... 92 2e-31
ref|YP_009177231.1| L protein [Barley yellow striate mosaic cyto... 93 4e-31
gb|ACT21686.1| polymerase [Barley yellow striate mosaic cytorhab... 93 4e-31
gb|ANN13970.1| RNA-dependent RNA polymerase, partial [Iranian ci... 82 8e-31
gb|AKJ77889.1| RNA-dependent RNA polymerase, partial [Iranian ci... 81 2e-30
ref|NP_597914.1| polymerase [Northern cereal mosaic cytorhabdovi... 92 3e-30
gb|ADE61677.1| polymerase protein [Northern cereal mosaic cytorh... 92 5e-30
gb|ATN96443.1| L protein [Maize yellow striate virus] 89 6e-30
gb|ATN96453.1| polymerase protein [Maize yellow striate virus] 89 6e-30
>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
dbj|BAM36035.2| RNA-dependent RNA polymerase [Persimmon virus A]
Length = 2089
Score = 256 bits (654), Expect(2) = e-133
Identities = 124/152 (81%), Positives = 138/152 (90%)
Frame = -1
Query: 859 YKVKDNSPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFIS 680
YK+ SP + C++NW+APLYMP +N+QLLIEDVSSVNVISPRTPL+G++QTVEKFIS
Sbjct: 908 YKILMGSPPGFENCLKNWLAPLYMPTKNYQLLIEDVSSVNVISPRTPLAGIKQTVEKFIS 967
Query: 679 DPKRIRNPEFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVT 500
DPKRIRNPEFR LMSGKIRDQA+ LA SLCEG++LHIRLLHDIYE+TIIGYIDSILSKVT
Sbjct: 968 DPKRIRNPEFRGLMSGKIRDQAQELAASLCEGDDLHIRLLHDIYEATIIGYIDSILSKVT 1027
Query: 499 KSSTIQRLAVEKSSFDSMSAVYHDEINCFRFF 404
KSSTIQRLAV KS FDSMSAVY DEINCFRFF
Sbjct: 1028 KSSTIQRLAVSKSKFDSMSAVYKDEINCFRFF 1059
Score = 248 bits (632), Expect(2) = e-133
Identities = 111/136 (81%), Positives = 122/136 (89%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNCE 229
FF+WR ++ S E I CPTTHAKKMREKSWGK LRG+TTPFPMSYL +T CG +K+CNCE
Sbjct: 1058 FFLWRCSVRSDEAISPCPTTHAKKMREKSWGKNLRGITTPFPMSYLARTECGENKLCNCE 1117
Query: 228 DGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMR 49
DGYISVHFPDKQ+NEY WNTSIGRNPPYLGSMTKEKVITGL+GKAYSSEPLIRRPL+LMR
Sbjct: 1118 DGYISVHFPDKQINEYMWNTSIGRNPPYLGSMTKEKVITGLVGKAYSSEPLIRRPLRLMR 1177
Query: 48 VINWYVPAESNTSKVI 1
VINWYVP SNT+ VI
Sbjct: 1178 VINWYVPPSSNTADVI 1193
>ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
gb|AJG39185.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
Length = 2098
Score = 187 bits (475), Expect(2) = 5e-92
Identities = 89/142 (62%), Positives = 113/142 (79%)
Frame = -1
Query: 829 LKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPEF 650
L + + NWI P+YMP++NF+LLIEDVSSVN++SPR+P SG+RQ VEKFI + ++N EF
Sbjct: 917 LDEALTNWIHPIYMPDKNFKLLIEDVSSVNLLSPRSPSSGIRQAVEKFIGSGRTVKNLEF 976
Query: 649 RELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRLAV 470
++LM+ KI+ QA LAE LC G ++HIRL+HDIY STIIGY+D ILSKVTK+STIQRLAV
Sbjct: 977 KDLMNSKIKHQADMLAEKLCSGSDIHIRLMHDIYASTIIGYVDGILSKVTKASTIQRLAV 1036
Query: 469 EKSSFDSMSAVYHDEINCFRFF 404
+ D M V +DEIN FRFF
Sbjct: 1037 ATNEKDIMQVVVNDEINFFRFF 1058
Score = 180 bits (456), Expect(2) = 5e-92
Identities = 80/136 (58%), Positives = 99/136 (72%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNCE 229
FF+WRS+ +I CPT AK++R +SWGK+LRGVTTPFPM+YL T CG C C
Sbjct: 1057 FFLWRSSTRPNNEISECPTEMAKRLRSESWGKSLRGVTTPFPMAYLSPTRCGETGNCLCM 1116
Query: 228 DGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMR 49
DGYIS+H PD Q WN ++G N PYLGS+TKEKV+TG+ K YSSEPLIRRPL L+R
Sbjct: 1117 DGYISIHLPDSQETNVRWNRTLGSNAPYLGSITKEKVVTGVGSKVYSSEPLIRRPLNLLR 1176
Query: 48 VINWYVPAESNTSKVI 1
INW++P +S T+ VI
Sbjct: 1177 AINWFIPPKSITASVI 1192
>ref|YP_009352236.1| L protein [Tomato yellow mottle-associated virus]
gb|AQY17505.1| L protein [Tomato yellow mottle-associated virus]
Length = 2085
Score = 173 bits (439), Expect(2) = 9e-83
Identities = 79/137 (57%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Frame = -2
Query: 408 FFVWRSAINSGEKIEN-CPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
FFVWR SG E C TT K MRE+ W K +RGVTTPFP+SY+++T+C + C+C
Sbjct: 1053 FFVWR-CFQSGTPFETRCATTQCKLMREQGWKKIIRGVTTPFPLSYMQETNCSTATGCDC 1111
Query: 231 EDGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLM 52
DG+ISVH+PDKQ+ +W + IG NPPYLGSMTKEKV+ G GK YS+EPLIRRP++L+
Sbjct: 1112 ADGFISVHYPDKQMPNESWCSDIGGNPPYLGSMTKEKVVVGTGGKIYSAEPLIRRPIRLL 1171
Query: 51 RVINWYVPAESNTSKVI 1
R INW+VP S+ +K+I
Sbjct: 1172 RTINWFVPQHSSMAKII 1188
Score = 163 bits (412), Expect(2) = 9e-83
Identities = 75/138 (54%), Positives = 102/138 (73%)
Frame = -1
Query: 817 MENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPEFRELM 638
+ NWI PLYMP N+ +L+EDV +VN++SPR+PLSGVRQ V+++++ +I NPEF +L+
Sbjct: 917 INNWINPLYMPECNYSMLLEDVYAVNLLSPRSPLSGVRQVVQRYLNSGMKIENPEFMQLV 976
Query: 637 SGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRLAVEKSS 458
K + LAE LCEG ELHIRLLHD+Y++TI GY+DSILSKVTK++TIQ+LA++ S
Sbjct: 977 RAKNDQDCRYLAECLCEGRELHIRLLHDVYDATIYGYVDSILSKVTKTTTIQKLAIQSDS 1036
Query: 457 FDSMSAVYHDEINCFRFF 404
+ DE N F FF
Sbjct: 1037 VKVFDTIMKDERNYFAFF 1054
>gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdovirus 1]
Length = 2071
Score = 172 bits (436), Expect(2) = 1e-81
Identities = 77/137 (56%), Positives = 99/137 (72%), Gaps = 1/137 (0%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSC-GSDKVCNC 232
FFVWR ++ G + +CPT AK MR WGK+L GVT FP+SYL KT+C D+ CNC
Sbjct: 1049 FFVWRCSVEGGNLLPDCPTDLAKSMRLNGWGKSLIGVTVAFPLSYLTKTTCYRKDQGCNC 1108
Query: 231 EDGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLM 52
EDG+IS++ PD + WNT+IGRNPPYLGSMTKEK++ K YS EPLI+RP++LM
Sbjct: 1109 EDGFISLYLPDNNVTPKEWNTAIGRNPPYLGSMTKEKLVISSGAKIYSGEPLIKRPIELM 1168
Query: 51 RVINWYVPAESNTSKVI 1
RV+ W+VP SNT+ +I
Sbjct: 1169 RVVGWFVPENSNTADII 1185
Score = 160 bits (406), Expect(2) = 1e-81
Identities = 78/152 (51%), Positives = 111/152 (73%)
Frame = -1
Query: 859 YKVKDNSPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFIS 680
Y VKD L ++ W P+YMP+ + +LLIEDVSSVN+++P TP +G+R+ VEK+++
Sbjct: 899 YGVKDADDDALLVILKRWCDPIYMPDVSLKLLIEDVSSVNLLAPVTPTAGLRRVVEKYLA 958
Query: 679 DPKRIRNPEFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVT 500
+ + IRN EF++LM ++ D +A+ LC+G+ LHIRLLHDI E+TI GYI SI+SKVT
Sbjct: 959 EGRAIRNQEFKDLMKTRVADVEDVIADQLCKGDTLHIRLLHDIMEATIFGYIKSIVSKVT 1018
Query: 499 KSSTIQRLAVEKSSFDSMSAVYHDEINCFRFF 404
KSSTI +AV+KS+ D ++ V DE N F+FF
Sbjct: 1019 KSSTILSIAVDKSTRDPLAKVIEDERNYFKFF 1050
>ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
sp|Q4W382.1|L_LNYV3 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
AltName: Full=Large structural protein; AltName:
Full=Replicase; AltName: Full=Transcriptase; Includes:
RecName: Full=RNA-directed RNA polymerase; Includes:
RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
Includes: RecName: Full=GDP
polyribonucleotidyltransferase; Includes: RecName:
Full=Cap-specific mRNA
(nucleoside-2'-O-)-methyltransferase 2
emb|CAG34091.1| putative polymerase [Lettuce necrotic yellows virus]
emb|CAI30426.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
Length = 2068
Score = 160 bits (406), Expect(2) = 3e-75
Identities = 75/137 (54%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSC-GSDKVCNC 232
FF+WRS IN I CPT AK++R WGK L GVT +P S+L+KT C S +C C
Sbjct: 1048 FFMWRSVINPHYDIPACPTDLAKQVRRIGWGKELIGVTVAYPWSFLKKTDCYESGCLCTC 1107
Query: 231 EDGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLM 52
+DG+IS+ PD + W+ SIG+NPPYLGSMTKEKV+ K YS EPL+RRP+ LM
Sbjct: 1108 DDGFISLFLPDSPVTPQEWDRSIGKNPPYLGSMTKEKVVISTGSKVYSGEPLVRRPINLM 1167
Query: 51 RVINWYVPAESNTSKVI 1
RVI W+VP ES T+K+I
Sbjct: 1168 RVIGWFVPEESETAKII 1184
Score = 150 bits (380), Expect(2) = 3e-75
Identities = 71/138 (51%), Positives = 101/138 (73%)
Frame = -1
Query: 817 MENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPEFRELM 638
M W+ P++MP R+ +LL+EDVSSVN+++P TP +G+R+ VE++++D + I+N EFR+LM
Sbjct: 912 MLRWLKPIFMPERSMRLLVEDVSSVNLLAPVTPTAGLRRVVEQYLTDGRVIKNAEFRDLM 971
Query: 637 SGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRLAVEKSS 458
+ + ++E LC GE LHIRL+HDI ESTI GY+ SI SKVTKSSTI LA+ K+
Sbjct: 972 MSRDNELEDVISEHLCSGEHLHIRLIHDIMESTIFGYVKSITSKVTKSSTIVSLAIGKAK 1031
Query: 457 FDSMSAVYHDEINCFRFF 404
D ++ + DE N FRFF
Sbjct: 1032 GDPLTRLMSDEENYFRFF 1049
>emb|CBL76312.2| RNA-dependent RNA polymerase, partial [Raspberry vein chlorosis
virus]
Length = 1010
Score = 158 bits (400), Expect(2) = 6e-75
Identities = 72/136 (52%), Positives = 91/136 (66%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNCE 229
FF WRS CPT ++MR K W K LRG+T P P S++++ C C+C+
Sbjct: 820 FFKWRSCSRGEAPSSLCPTDICREMRLKGWQKELRGITIPHPFSFMKEAECDHRMGCDCK 879
Query: 228 DGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMR 49
DGY+S+H PD QL + W SIG NPPYLGSMTKEKV+ G GK YS EPLI+RPL LMR
Sbjct: 880 DGYMSIHLPDGQLPDDMWMNSIGANPPYLGSMTKEKVVVGAGGKVYSGEPLIKRPLNLMR 939
Query: 48 VINWYVPAESNTSKVI 1
INW+VP +S T+++I
Sbjct: 940 SINWFVPEDSVTAEMI 955
Score = 152 bits (383), Expect(2) = 6e-75
Identities = 68/151 (45%), Positives = 106/151 (70%)
Frame = -1
Query: 856 KVKDNSPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISD 677
K +P L++ ++NW+ P+YMP N+ L+ DV++VN++SPR+ SG++Q V K++S
Sbjct: 671 KASCKTPGWLRELLDNWMCPIYMPQINYYNLVTDVTAVNLLSPRSTSSGIKQVVTKYLSS 730
Query: 676 PKRIRNPEFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTK 497
K I+N EF+ LM K + + +AE +C G ELHI+L+HD+ ++TI GY+DSILSKV K
Sbjct: 731 GKDIKNEEFKNLMQTKQKKHEEFMAELICSGHELHIKLIHDLVDATIYGYVDSILSKVVK 790
Query: 496 SSTIQRLAVEKSSFDSMSAVYHDEINCFRFF 404
++TIQRLA++ S D+ +Y DE ++FF
Sbjct: 791 TNTIQRLAMQHSEEDTFKTIYRDEKTYYKFF 821
>ref|YP_002308376.1| L protein [Lettuce yellow mottle virus]
gb|ABV56129.1| L protein [Lettuce yellow mottle virus]
Length = 2068
Score = 155 bits (392), Expect(2) = 4e-74
Identities = 76/135 (56%), Positives = 100/135 (74%)
Frame = -1
Query: 808 WIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPEFRELMSGK 629
W+ PL+MP R+ +LLIEDVSSVN+++P TP +G+R+ VE+F+SD + IRN EFR+LM+ +
Sbjct: 915 WVKPLFMPERSMKLLIEDVSSVNLLAPVTPTAGLRRVVERFLSDGRVIRNSEFRDLMTSR 974
Query: 628 IRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRLAVEKSSFDS 449
D ++E LC G+ LHIRL+HDI ESTI GYI SI SKVTKSSTI LA+ K+ D
Sbjct: 975 DPDMEDVISEHLCSGDHLHIRLIHDIMESTIFGYIKSITSKVTKSSTIVSLAIGKTKGDP 1034
Query: 448 MSAVYHDEINCFRFF 404
+ + DE N FRFF
Sbjct: 1035 LRRLMLDEENYFRFF 1049
Score = 152 bits (384), Expect(2) = 4e-74
Identities = 70/137 (51%), Positives = 91/137 (66%), Gaps = 1/137 (0%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSD-KVCNC 232
FF+WR ++ ++ +CPT AK+MR WGK L GVT FP S+L K C + C+C
Sbjct: 1048 FFLWRCSVEPTFELPDCPTDLAKQMRYLGWGKELIGVTVAFPWSFLTKAQCMENGSFCDC 1107
Query: 231 EDGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLM 52
EDG+IS+ PD + WN IG NPPYLGS+TKEKV+ K YS EPL++RP+ LM
Sbjct: 1108 EDGFISLFLPDSPVTRDQWNLGIGTNPPYLGSVTKEKVVITTGSKIYSGEPLVKRPINLM 1167
Query: 51 RVINWYVPAESNTSKVI 1
RVI W+VP ES T+K+I
Sbjct: 1168 RVIGWFVPEESETAKII 1184
>ref|YP_009300689.1| RNA-dependent RNA polymerase [Wuhan Insect virus 4]
gb|AJG39179.1| RNA-dependent RNA polymerase [Wuhan Insect virus 4]
Length = 2105
Score = 152 bits (384), Expect(2) = 1e-70
Identities = 77/139 (55%), Positives = 99/139 (71%), Gaps = 3/139 (2%)
Frame = -2
Query: 408 FFVWRSAINSGEKIE-NCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSD--KVC 238
FF WRS + G+ E +CPT +AK +RE W + L+GVT PFP+SY+ +T+C S+ C
Sbjct: 1070 FFNWRS-FHFGQPWETDCPTRYAKHVREFGWKRELKGVTVPFPLSYMDRTACYSNLGSTC 1128
Query: 237 NCEDGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLK 58
C DGY+SVH D +N WN SIG++ PY+GSMTKEKV+ K YSSEPLI+RPL+
Sbjct: 1129 KCNDGYVSVHLSD-DVNYNEWNASIGKSLPYMGSMTKEKVLVQSGIKIYSSEPLIKRPLR 1187
Query: 57 LMRVINWYVPAESNTSKVI 1
LMR INW+VP ES T+KVI
Sbjct: 1188 LMRAINWFVPEESETAKVI 1206
Score = 143 bits (361), Expect(2) = 1e-70
Identities = 68/138 (49%), Positives = 98/138 (71%)
Frame = -1
Query: 817 MENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPEFRELM 638
+ENW ++MP N+++++ED+ SVN ++P TP+S +RQTV +F+S ++++N EF +LM
Sbjct: 934 LENWSRVIFMPEINYKMMMEDILSVNHLNPITPMSHIRQTVAQFLSSHRKVKNKEFVDLM 993
Query: 637 SGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRLAVEKSS 458
+ + L+ LC G +LHIRLLHDIYESTIIGY+D I+SKVTK+STI LAV +
Sbjct: 994 AVSKDPNKELLSNMLCSGRKLHIRLLHDIYESTIIGYVDGIISKVTKTSTIANLAVRHAQ 1053
Query: 457 FDSMSAVYHDEINCFRFF 404
D A+ + EIN F FF
Sbjct: 1054 KDINDAISNTEINYFHFF 1071
>ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
gb|AJG39191.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
Length = 2079
Score = 180 bits (457), Expect = 2e-47
Identities = 87/171 (50%), Positives = 128/171 (74%), Gaps = 2/171 (1%)
Frame = -1
Query: 844 NSPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRI 665
++P LK +ENW++P++MP+ N+ L++DV+SVN++SPR P +G++QTVE++++D + I
Sbjct: 906 SAPKWLKSVIENWLSPIFMPDTNYSTLLQDVTSVNLMSPRAPTAGIKQTVERYMTDERLI 965
Query: 664 RNPEFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTI 485
+N EFR+LM+ K+++ + L+E LCEG+ LHIRLLHDIYE+TI GY++SILSKVTK+STI
Sbjct: 966 KNKEFRDLMATKVKEHEEYLSECLCEGKILHIRLLHDIYEATIYGYVNSILSKVTKTSTI 1025
Query: 484 QRLAVEKSSFDSMSAVYHDEINCFRFFCVEERYKFRGKN*KLSNNT--CKE 338
Q LA+ KSSFD + DE+NC+ + V R +G LS T CKE
Sbjct: 1026 QNLAMAKSSFDVFDVICRDEVNCYNY--VIWRSSAKGMQLSLSCPTEFCKE 1074
Score = 161 bits (408), Expect = 5e-41
Identities = 70/136 (51%), Positives = 95/136 (69%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNCE 229
+ +WRS+ + +CPT K++R WGK LRGVTTP+P SYL +++C C C+
Sbjct: 1051 YVIWRSSAKGMQLSLSCPTEFCKEIRLIGWGKDLRGVTTPYPASYLIESNCDVTDSCMCD 1110
Query: 228 DGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMR 49
DGY+SVHFPD Q+ W IG NPPYLGS TKEKV+ G G+ YSSEPL++RP+ L+R
Sbjct: 1111 DGYLSVHFPDDQITNEMWMFDIGGNPPYLGSTTKEKVVIGTGGRVYSSEPLVKRPINLLR 1170
Query: 48 VINWYVPAESNTSKVI 1
INW+VP +SN +++I
Sbjct: 1171 TINWFVPPDSNAARLI 1186
>ref|YP_009177021.1| polymerase protein [Alfalfa dwarf virus]
gb|AKD44217.1| polymerase protein [Alfalfa dwarf virus]
Length = 2085
Score = 159 bits (403), Expect = 3e-40
Identities = 71/136 (52%), Positives = 93/136 (68%)
Frame = -2
Query: 408 FFVWRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNCE 229
FF WR A +CPT ++MR++ W K LRG+T P P S++++T C C+C
Sbjct: 1048 FFRWRCAQEGDTLRSDCPTEMCREMRQEGWKKNLRGITIPHPHSFMKETLCDHIIGCDCS 1107
Query: 228 DGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMR 49
DGY+S+H PD Q+ W SIG +PPYLGSMTKEKV+ G GK YSSEPLIRRP+ ++R
Sbjct: 1108 DGYMSIHLPDGQMPNDVWLNSIGGSPPYLGSMTKEKVVVGAGGKVYSSEPLIRRPINMLR 1167
Query: 48 VINWYVPAESNTSKVI 1
INW+VP ESNT+ +I
Sbjct: 1168 SINWFVPPESNTANII 1183
Score = 147 bits (371), Expect = 5e-36
Identities = 74/180 (41%), Positives = 115/180 (63%), Gaps = 3/180 (1%)
Frame = -1
Query: 841 SPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIR 662
+P L + + W+ P+YMP+ N+ L++DV++VN++SPR+P SG++Q V ++S I+
Sbjct: 904 APHWLAEILRRWVKPIYMPSINYATLVQDVTAVNLLSPRSPSSGIKQVVTTYMSSGASIK 963
Query: 661 NPEFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQ 482
N EF++LM K + + L+E LC G++LHIRL+HDI+++TI GY+D ILSKV K++TIQ
Sbjct: 964 NEEFKDLMLTKDKLHEEFLSELLCTGDDLHIRLIHDIFDATIYGYVDGILSKVVKTNTIQ 1023
Query: 481 RLAVEKSSFDSMSAVYHDEINCFRFF---CVEERYKFRGKN*KLSNNTCKEDERKELGKN 311
RLA+ +SS D + DE F+FF C +E R C+E ++ KN
Sbjct: 1024 RLAMSQSSKDIFDVIESDEKTYFKFFRWRCAQEGDTLRS---DCPTEMCREMRQEGWKKN 1080
>gb|ARS22495.1| putative L protein [Maize associated rhabdovirus]
Length = 2066
Score = 101 bits (252), Expect(2) = 4e-34
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 2/133 (1%)
Frame = -2
Query: 408 FFVWRSAINSGEKIEN-CPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
+F WR+ + GE+ + CP T + +REK W K + G++TP+P Y+ +D+
Sbjct: 1042 YFEWRTHYSRGERFQTKCPATQIRYLREKGWQKKIIGISTPYPFHYITLNERDTDR---- 1097
Query: 231 EDGYISVHFPDKQLNE-YTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKL 55
D YI V D+ L+ T S G + PYLGS+TKEK+ + AY +EPLI RPL+L
Sbjct: 1098 PDSYIEVVISDRVLSHPQTLINSSGTSLPYLGSVTKEKLHSTAARAAYGTEPLITRPLRL 1157
Query: 54 MRVINWYVPAESN 16
MR I W++ SN
Sbjct: 1158 MRAIGWFIDENSN 1170
Score = 72.8 bits (177), Expect(2) = 4e-34
Identities = 39/144 (27%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Frame = -1
Query: 829 LKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFIS--DPKRIRNP 656
LK ++NW+ P+ ++ LI+D +++N++ P + +++ + I D + +
Sbjct: 902 LKHAIKNWLRVCLSPSIDYLHLIQDPTALNILCPPNSNTIIKRMIHSTIDSIDSESEFST 961
Query: 655 EFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRL 476
F+ELM + + + L G E+++RL HDI +T+ GY ++I +KV K+ T+ R+
Sbjct: 962 WFKELMGISAEKKVEGIVAKLSAGPEINVRLCHDILGATLYGYSEAISAKVDKTVTLSRM 1021
Query: 475 AVEKSSFDSMSAVYHDEINCFRFF 404
V ++ D ++++ EI +R+F
Sbjct: 1022 TVARN--DVVTSLARGEIRMWRYF 1043
>ref|YP_009362280.1| RNA-dependent RNA polymerase [Colocasia bobone disease-associated
virus]
gb|ALU34427.1| RNA-dependent RNA polymerase [Colocasia bobone disease-associated
virus]
Length = 2068
Score = 91.7 bits (226), Expect(2) = 2e-31
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Frame = -2
Query: 399 WRSAINSGEKI-ENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNCEDG 223
WRS ++GE +CP+ + + R+K W K + GV+TPFP +L + +++ D
Sbjct: 1047 WRSTSSAGEAPPSSCPSFNIRYYRDKGWKKRVLGVSTPFPFHFLTRDRSKTNR----PDS 1102
Query: 222 YISVHFPDKQL-NEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMRV 46
YI V D + N + G + PYLGS+TKEK+ AY +EPLI RP++L+R
Sbjct: 1103 YIEVVMNDVGVGNTNALLMTAGSSLPYLGSVTKEKLQASATRAAYGTEPLIARPVRLLRA 1162
Query: 45 INWYVPAESNTS 10
I W++P +SN S
Sbjct: 1163 IGWFIPEKSNWS 1174
Score = 73.6 bits (179), Expect(2) = 2e-31
Identities = 42/130 (32%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Frame = -1
Query: 847 DNSPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISD-PK 671
D+SP +++ + NW L + ++ L++D +S+N+ SP + +++ +++ I+ PK
Sbjct: 898 DHSPADIRPYLRNWHHLLLNDSVDYLHLLQDPTSINIFSPPNSNTIIKRMIQQTIAKLPK 957
Query: 670 RIRNPE-FRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKS 494
F+ELM + + E L E+++RL HDI ST+ GY DSI SKV K+
Sbjct: 958 DSEFASWFQELMGISADKAVEPIVEKLTASAEINVRLCHDILGSTLFGYADSIASKVDKT 1017
Query: 493 STIQRLAVEK 464
T+ R+ V K
Sbjct: 1018 VTLSRMTVGK 1027
>ref|YP_009177231.1| L protein [Barley yellow striate mosaic cytorhabdovirus]
gb|AJP67524.1| L protein [Barley yellow striate mosaic cytorhabdovirus]
Length = 2056
Score = 92.8 bits (229), Expect(2) = 4e-31
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Frame = -2
Query: 408 FFVWRSAINSGE-KIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
+ +WRS GE +I CP+ + +R+K W K + G++TP+P ++ G + +
Sbjct: 1040 YLMWRSNYRGGEVRISRCPSKQIRYLRDKGWKKKVIGISTPYPFHFI-----GGIEDTDR 1094
Query: 231 EDGYISVHFPDKQLNEYTW-NTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKL 55
D Y+ V D L+ T+ G + PYLGS+TKEK+ AY +EPLI RPL+L
Sbjct: 1095 TDSYVEVVVNDLVLSHPDLLQTASGSSLPYLGSVTKEKLHNTAARAAYGTEPLITRPLRL 1154
Query: 54 MRVINWYVPAESNTSKVI 1
+R I W++ SN +K I
Sbjct: 1155 LRTIGWFIDENSNLAKSI 1172
Score = 71.2 bits (173), Expect(2) = 4e-31
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Frame = -1
Query: 847 DNSPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFIS--DP 674
+ S L+Q + NW L P+ ++ L++D +S+N++ P + +++ + I D
Sbjct: 894 EGSTGQLRQGLVNWRRVLLSPSVDYLHLLQDPTSLNILCPPNSNTMIKRMIHSTIEGIDS 953
Query: 673 KRIRNPEFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKS 494
+ F+EL+ + + E L GEE++ RL HDI +T+ GY D+I SKV K+
Sbjct: 954 NSEFSGWFKELIGISSEKKMDGIVEKLTSGEEINARLNHDIMGATLFGYSDAIASKVDKT 1013
Query: 493 STIQRLAVEKSSFDSMSAVYHDEINCFRFFCVEERYK 383
T+ R+ V + D + ++ E +R+ Y+
Sbjct: 1014 VTLSRMTVAQQ--DVVGSLVAGEQRVWRYLMWRSNYR 1048
>gb|ACT21686.1| polymerase [Barley yellow striate mosaic cytorhabdovirus]
Length = 2056
Score = 92.8 bits (229), Expect(2) = 4e-31
Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 2/138 (1%)
Frame = -2
Query: 408 FFVWRSAINSGE-KIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
+ +WRS GE +I CP+ + +R+K W K + G++TP+P ++ G + +
Sbjct: 1040 YLMWRSNYRGGEVRISKCPSKQIRHLRDKGWKKKVIGISTPYPFHFI-----GGIEDTDR 1094
Query: 231 EDGYISVHFPDKQLNEYTW-NTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKL 55
+D Y+ V D L+ T+ G + PYLGS+TKEK+ AY EPLI RPL+L
Sbjct: 1095 KDSYVEVVVNDLVLSHPDLLQTASGSSLPYLGSVTKEKLHNTAARAAYGIEPLITRPLRL 1154
Query: 54 MRVINWYVPAESNTSKVI 1
+R I W++ SN +K I
Sbjct: 1155 LRTIGWFIDENSNLAKSI 1172
Score = 71.2 bits (173), Expect(2) = 4e-31
Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)
Frame = -1
Query: 847 DNSPTNLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFIS--DP 674
+ S L+Q + NW L P+ ++ L++D +S+N++ P + +++ + I D
Sbjct: 894 EGSTGQLRQGLVNWRRVLLSPSVDYLHLLQDPTSLNILCPPNSNTMIKRMIHSTIEGIDS 953
Query: 673 KRIRNPEFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKS 494
+ F+EL+ + + E L GEE++ RL HDI +T+ GY D+I SKV K+
Sbjct: 954 NSEFSGWFKELIGISSEKKMDGIVEKLTSGEEINARLNHDIMGATLFGYSDAIASKVDKT 1013
Query: 493 STIQRLAVEKSSFDSMSAVYHDEINCFRFFCVEERYK 383
T+ R+ V + D + ++ E +R+ Y+
Sbjct: 1014 VTLSRMTVAQQ--DVVGSLVAGEQRVWRYLMWRSNYR 1048
>gb|ANN13970.1| RNA-dependent RNA polymerase, partial [Iranian citrus ringspot virus]
Length = 1059
Score = 82.4 bits (202), Expect(2) = 8e-31
Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Frame = -2
Query: 378 GEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVC---NCEDGYISVH 208
GE NCPT + + R+ W K + GVT P+P LR +C N +IS
Sbjct: 900 GEPQLNCPTNYVRWARDFGWKKEILGVTVPYPSHTLRYKGGNHSLICQGSNMLTCHISDF 959
Query: 207 FPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMRVINWYVP 28
PD ++E T++G +PPYLGS TKEK+ + YSSEPL++R ++LMRV+ W
Sbjct: 960 VPD-SVSEML--TTLGSSPPYLGSYTKEKIKSYDRTALYSSEPLLKRIIRLMRVLGWGNL 1016
Query: 27 AESN 16
ESN
Sbjct: 1017 EESN 1020
Score = 80.9 bits (198), Expect(2) = 8e-31
Identities = 40/124 (32%), Positives = 69/124 (55%)
Frame = -1
Query: 778 NFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPEFRELMSGKIRDQAKALAE 599
N L+ED ++N+I P+TPL+ +R V+ + + RN F L + + L
Sbjct: 762 NLDFLVEDPCAINLIQPKTPLTMLRTKVKNVLGNNLSFRNKNFLGLFKLSNDTRKRDLLN 821
Query: 598 SLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRLAVEKSSFDSMSAVYHDEIN 419
L G+++ RLLHD Y +++ G++D ++SKV K+ T+QR+ +E S D + + E N
Sbjct: 822 KLASGDQIFPRLLHDCYAASLFGFVDGVVSKVDKTVTVQRMCLELSDDDLILGMCRVEEN 881
Query: 418 CFRF 407
R+
Sbjct: 882 YIRY 885
>gb|AKJ77889.1| RNA-dependent RNA polymerase, partial [Iranian citrus ringspot virus]
Length = 1059
Score = 81.3 bits (199), Expect(2) = 2e-30
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Frame = -2
Query: 399 WRSAINSGEKIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVC---NCE 229
+R++ GE NCPT + + R+ W K + GVT P+P LR +C N
Sbjct: 893 FRTSKYPGEPQLNCPTNYIRWARDFGWKKEILGVTVPYPSHTLRYKGGIHSLICQGSNML 952
Query: 228 DGYISVHFPDKQLNEYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKLMR 49
+IS PD ++E T++G +PPYLGS TKEK+ + YSSEPL++R ++LMR
Sbjct: 953 TCHISDFVPD-SVSEML--TTLGSSPPYLGSYTKEKIKSYDRTALYSSEPLLKRIIRLMR 1009
Query: 48 VINWYVPAESN 16
V+ W ESN
Sbjct: 1010 VLGWGNLEESN 1020
Score = 80.5 bits (197), Expect(2) = 2e-30
Identities = 39/124 (31%), Positives = 69/124 (55%)
Frame = -1
Query: 778 NFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPEFRELMSGKIRDQAKALAE 599
N L+ED ++N+I P+TPL+ +R V+ + + +N F L + + L
Sbjct: 762 NLDFLVEDPCAINLIQPKTPLTMLRTKVKNVLGNNLSFKNKNFLSLFKLSNDTRKRDLLN 821
Query: 598 SLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRLAVEKSSFDSMSAVYHDEIN 419
L G+++ RLLHD Y +++ G++D ++SKV K+ T+QR+ +E S D + + E N
Sbjct: 822 KLASGDQIFPRLLHDCYAASLFGFVDGVVSKVDKTVTVQRMCLELSDDDLVLGMCRVEEN 881
Query: 418 CFRF 407
R+
Sbjct: 882 YIRY 885
>ref|NP_597914.1| polymerase [Northern cereal mosaic cytorhabdovirus]
Length = 2058
Score = 92.0 bits (227), Expect(2) = 3e-30
Identities = 49/138 (35%), Positives = 81/138 (58%), Gaps = 2/138 (1%)
Frame = -2
Query: 408 FFVWRSAINSGEKIEN-CPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
+F+WR+ + GE++ + CP+ + +R+K W K + G++TP+P +L G + +
Sbjct: 1041 YFLWRTNYDQGEEVVSLCPSEQIRHLRKKGWKKDVVGISTPYPHHFL-----GGEDETDR 1095
Query: 231 EDGYISVHFPDKQLNEYT-WNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKL 55
D Y+ V D L+ + G + PYLGS+TKEK+ + AY +EPLI RP+KL
Sbjct: 1096 PDSYVEVVVNDVVLSHPDRLILTTGSSLPYLGSVTKEKLHSTSARAAYGTEPLITRPIKL 1155
Query: 54 MRVINWYVPAESNTSKVI 1
+R I W++ ESN ++ I
Sbjct: 1156 LRAIGWFIDEESNWAESI 1173
Score = 69.3 bits (168), Expect(2) = 3e-30
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 2/150 (1%)
Frame = -1
Query: 829 LKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFIS--DPKRIRNP 656
LK ++NW + P+ ++ LI+D +S+N++ P + +++ + + I+ D +
Sbjct: 901 LKTALKNWYRVVLSPSIDYLHLIQDPTSLNLLCPPNSKTLIKRLISETITSLDTQSEFAG 960
Query: 655 EFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRL 476
F+ELM + L E L +E+++RL HDI +T+ GY +SI SKV K+ T+ R+
Sbjct: 961 WFQELMEISAEKKMGTLVEKLTSKDEVNVRLCHDILGATLYGYSESISSKVDKTVTLSRM 1020
Query: 475 AVEKSSFDSMSAVYHDEINCFRFFCVEERY 386
V +S D +S + E + +F Y
Sbjct: 1021 TV--TSKDVVSKLAIGEKKTWNYFLWRTNY 1048
>gb|ADE61677.1| polymerase protein [Northern cereal mosaic cytorhabdovirus]
Length = 2058
Score = 91.7 bits (226), Expect(2) = 5e-30
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Frame = -2
Query: 408 FFVWRSAINSGEKIEN-CPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
+F+WR+ + GE I + CP+ + +R+K W K + G++TP+P +L G + +
Sbjct: 1041 YFLWRTNYDQGEDIVSLCPSEQIRHLRKKGWKKDVVGISTPYPHHFL-----GGEDETDR 1095
Query: 231 EDGYISVHFPDKQLNEYT-WNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLKL 55
D Y+ V D L+ + G + PYLGS+TKEK+ + AY +EPLI RP+KL
Sbjct: 1096 PDSYVEVVVNDVVLSHPDRLILTTGSSLPYLGSVTKEKLHSTSARAAYGTEPLITRPIKL 1155
Query: 54 MRVINWYVPAESNTSKVI 1
+R I W++ ESN ++ I
Sbjct: 1156 LRAIGWFIDEESNWAESI 1173
Score = 68.9 bits (167), Expect(2) = 5e-30
Identities = 43/150 (28%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Frame = -1
Query: 829 LKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFIS--DPKRIRNP 656
LK ++NW + P+ ++ LI+D +S+N++ P + +++ + + I+ D +
Sbjct: 901 LKTALKNWYRVVLSPSIDYLHLIQDPTSLNLLCPPNSKTLIKRLISETITSLDTQSEFAG 960
Query: 655 EFRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQRL 476
F+ELM + + L + L +E+++RL HDI +T+ GY +SI SKV K+ T+ R+
Sbjct: 961 WFQELMEISAEKKMETLVKKLTSKDEVNVRLCHDILGATLYGYSESISSKVDKTVTLSRM 1020
Query: 475 AVEKSSFDSMSAVYHDEINCFRFFCVEERY 386
V +S D +S + E + +F Y
Sbjct: 1021 TV--TSKDVVSRLAIGEKKTWNYFLWRTNY 1048
>gb|ATN96443.1| L protein [Maize yellow striate virus]
Length = 2056
Score = 88.6 bits (218), Expect(2) = 6e-30
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Frame = -2
Query: 408 FFVWRSAINSGE-KIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
+ +WR+ G+ +I CP+ + +R+K W K + G++TP+P Y+ G +
Sbjct: 1040 YLLWRTNYKGGQPRISECPSKQIRHLRDKGWKKKIIGISTPYPFHYM-----GGLGDTDR 1094
Query: 231 EDGYISVHFPDKQLN--EYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLK 58
D Y+ V D L+ + TS G + PYLGS+TKEK+ AY +EPLI RPL+
Sbjct: 1095 PDSYVEVVVNDLVLSHPDRLLLTS-GASLPYLGSVTKEKLHNTAARAAYGTEPLITRPLR 1153
Query: 57 LMRVINWYVPAESNTSKVI 1
L+R I W++ +SN +K I
Sbjct: 1154 LLRTIGWFIDEKSNLAKSI 1172
Score = 71.6 bits (174), Expect(2) = 6e-30
Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Frame = -1
Query: 832 NLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPE 653
NL++ + NW L P+ ++ +++D +S+N++ P + +++ + I + +
Sbjct: 899 NLRRGLINWGKILLSPSVDYLHILQDPTSLNILCPPNSNTLIKRMIHNTIEEMESESEFA 958
Query: 652 --FRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQR 479
F+EL+S + + E L GEE++ RL HDI +T+ GY D+I SKV K+ T+ R
Sbjct: 959 GWFKELISISAEKKMDGIVEKLTSGEEINARLCHDIMGATLFGYSDAIASKVDKTVTLSR 1018
Query: 478 LAVEKSSFDSMSAVYHDEINCFRFFCVEERYK 383
+ V + D +S++ + E + + YK
Sbjct: 1019 MTVAQQ--DVVSSLVNGEKRIWNYLLWRTNYK 1048
>gb|ATN96453.1| polymerase protein [Maize yellow striate virus]
Length = 2056
Score = 88.6 bits (218), Expect(2) = 6e-30
Identities = 50/139 (35%), Positives = 78/139 (56%), Gaps = 3/139 (2%)
Frame = -2
Query: 408 FFVWRSAINSGE-KIENCPTTHAKKMREKSWGKTLRGVTTPFPMSYLRKTSCGSDKVCNC 232
+ +WR+ G+ +I CP+ + +R+K W K + G++TP+P Y+ G +
Sbjct: 1040 YLLWRTNYKGGQPRISECPSKQIRHLRDKGWKKKIIGISTPYPFHYM-----GGLGDTDR 1094
Query: 231 EDGYISVHFPDKQLN--EYTWNTSIGRNPPYLGSMTKEKVITGLIGKAYSSEPLIRRPLK 58
D Y+ V D L+ + TS G + PYLGS+TKEK+ AY +EPLI RPL+
Sbjct: 1095 PDSYVEVVVNDLVLSHPDRLLLTS-GASLPYLGSVTKEKLHNTAARAAYGTEPLITRPLR 1153
Query: 57 LMRVINWYVPAESNTSKVI 1
L+R I W++ +SN +K I
Sbjct: 1154 LLRTIGWFIDEKSNLAKSI 1172
Score = 71.6 bits (174), Expect(2) = 6e-30
Identities = 42/152 (27%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Frame = -1
Query: 832 NLKQCMENWIAPLYMPNRNFQLLIEDVSSVNVISPRTPLSGVRQTVEKFISDPKRIRNPE 653
NL++ + NW L P+ ++ +++D +S+N++ P + +++ + I + +
Sbjct: 899 NLRRGLINWGKILLSPSVDYLHILQDPTSLNILCPPNSNTLIKRMIHNTIEEMESESEFA 958
Query: 652 --FRELMSGKIRDQAKALAESLCEGEELHIRLLHDIYESTIIGYIDSILSKVTKSSTIQR 479
F+EL+S + + E L GEE++ RL HDI +T+ GY D+I SKV K+ T+ R
Sbjct: 959 GWFKELISISAEKKMDGIVEKLTSGEEINARLCHDIMGATLFGYSDAIASKVDKTVTLSR 1018
Query: 478 LAVEKSSFDSMSAVYHDEINCFRFFCVEERYK 383
+ V + D +S++ + E + + YK
Sbjct: 1019 MTVAQQ--DVVSSLVNGEKRIWNYLLWRTNYK 1048