BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00038104
         (446 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon viru...   165   2e-44
ref|YP_002308376.1| L protein [Lettuce yellow mottle virus] >gi|...    72   7e-12
ref|YP_009352236.1| L protein [Tomato yellow mottle-associated v...    68   3e-10
gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdov...    67   4e-10
ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect v...    65   2e-09
ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic ...    64   6e-09
ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect v...    62   2e-08

>ref|YP_006576506.2| RNA-dependent RNA polymerase [Persimmon virus A]
 dbj|BAM36035.2| RNA-dependent RNA polymerase [Persimmon virus A]
          Length = 2089

 Score =  165 bits (418), Expect = 2e-44
 Identities = 81/147 (55%), Positives = 100/147 (68%)
 Frame = -2

Query: 445  FARWKCSSDKRKTLATELDVIRYLDSLLIRSESDSMAGLAMVYGWEETYNLMNFDSSIVL 266
            FARWKC+S K   + T  D+ RYL+S L+R ESD M+GL+M YGWEETY  MNF  +I+L
Sbjct: 1429 FARWKCASTKVSRMPTIKDIQRYLESYLVRVESDCMSGLSMFYGWEETYKKMNFHRAIIL 1488

Query: 265  PNTVPASLASACESVRRTLINMIRKKTEVRERERMYFTEDVKNNKFIHKLMFSDYVKQIT 86
            PNTVPASL S+CESVR+TLI M+  +     RE  Y  ED KNN+FI KLM SDY+   T
Sbjct: 1489 PNTVPASLFSSCESVRKTLIGMMVDEDAYMARENYYIPEDTKNNRFIIKLMISDYITTKT 1548

Query: 85   SCDACILEVYLCDSLNITTDLYRLTCS 5
             C+ CIL V+  +S  +   LY L CS
Sbjct: 1549 RCEPCILTVFNTESSTLLESLYSLVCS 1575


>ref|YP_002308376.1| L protein [Lettuce yellow mottle virus]
 gb|ABV56129.1| L protein [Lettuce yellow mottle virus]
          Length = 2068

 Score = 72.4 bits (176), Expect = 7e-12
 Identities = 38/136 (27%), Positives = 68/136 (50%)
 Frame = -2

Query: 442  ARWKCSSDKRKTLATELDVIRYLDSLLIRSESDSMAGLAMVYGWEETYNLMNFDSSIVLP 263
            A W+C S       T+  ++R  ++LL+ +      G+   + W  +         I  P
Sbjct: 1421 AEWRCMSKSDWKTPTDESIVRAAEALLVDTPVTRWYGMTGFFSWPSSMMHYYAYPEIQEP 1480

Query: 262  NTVPASLASACESVRRTLINMIRKKTEVRERERMYFTEDVKNNKFIHKLMFSDYVKQITS 83
            +T+P +  SAC S+R++L+ +I    +   R+    +EDVK +K   KLM  D++K+ T+
Sbjct: 1481 DTIPVTSFSACRSIRQSLLGLIGSTRKFPSRQTRIISEDVKTSKMTLKLMVFDWIKKNTT 1540

Query: 82   CDACILEVYLCDSLNI 35
            C AC   V +  + N+
Sbjct: 1541 CRACWRSVGVLSTHNL 1556


>ref|YP_009352236.1| L protein [Tomato yellow mottle-associated virus]
 gb|AQY17505.1| L protein [Tomato yellow mottle-associated virus]
          Length = 2085

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
 Frame = -2

Query: 424  SDKRKTLATELDVIRYLDSLLIRSESDSMAGLAMVYGWEET-YNLMNFDSSIVLPNTVPA 248
            S   +T A++ ++ R +  +L  +++    GLAM + WEET          +V P T P 
Sbjct: 1432 SHPERTDASDNEIERVMIDILNSADTHGFLGLAMFFCWEETSLAYSRIYPEVVPPATNPI 1491

Query: 247  SLASACESVRRTLINMIRKKTEVRERERMYFTEDVKNNKFIHKLMFSDYVKQITSCDACI 68
            S+ SACESVR ++I+++ K+     +       D +N K I+K +  D +++ T C ACI
Sbjct: 1492 SVFSACESVRTSMISLVSKRIVTGLKRSEIILHDEQNEKLIYKFLILDDLEKATRCKACI 1551


>gb|ATS17313.1| RNA-dependent RNA polymerase [Cabbage cytorhabdovirus 1]
          Length = 2071

 Score = 67.4 bits (163), Expect = 4e-10
 Identities = 34/126 (26%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
 Frame = -2

Query: 442  ARWKCSSDKRKTLATELDVIRYLDSLLIRSESDSMAGLAMVYGWEETYNLMNFDSSIVLP 263
            A W+C +     + T   + R + +++    +D ++G+A  + W E      F + IV P
Sbjct: 1422 AEWRCLTSADWKVPTASSIERAITAMIGDMNTDKLSGMAGFFTWPEAMKRYYFANEIVEP 1481

Query: 262  NTVPASLASACESVRRTLINMIRK-KTEVRERERMYFTEDVKNNKFIHKLMFSDYVKQIT 86
            +T+P ++ASAC++++ +LIN++   KT   +R+     E+ K +K + K+M  + ++  T
Sbjct: 1482 DTIPVNVASACKAIKISLINLLSSGKTFDVKRQHYILLEETKTSKLVLKMMIYEILRART 1541

Query: 85   SCDACI 68
            S   C+
Sbjct: 1542 SRWCCL 1547


>ref|YP_009300875.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
 gb|AJG39185.1| RNA-dependent RNA polymerase [Wuhan Insect virus 5]
          Length = 2098

 Score = 65.5 bits (158), Expect = 2e-09
 Identities = 37/112 (33%), Positives = 51/112 (45%)
 Frame = -2

Query: 343  SMAGLAMVYGWEETYNLMNFDSSIVLPNTVPASLASACESVRRTLINMIRKKTEVRERER 164
            S  GL M Y W ET   M+F S  V+PNT P +  S C + R TL  +I  +   R+R  
Sbjct: 1462 SFLGLGMFYSWSETIQKMHFSSFCVMPNTFPITTESMCMAARTTLSGLIEVQWGRRDRFS 1521

Query: 163  MYFTEDVKNNKFIHKLMFSDYVKQITSCDACILEVYLCDSLNITTDLYRLTC 8
                 D      IHKL     + + + C+ CI+ +   DS    TD   + C
Sbjct: 1522 NVLVYDFAKALHIHKLFSWTVISRYSKCNDCIVAIADTDSGAFGTDELTIMC 1573


>ref|YP_425092.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
 sp|Q4W382.1|L_LNYV3 RecName: Full=RNA-directed RNA polymerase L; Short=Protein L;
            AltName: Full=Large structural protein; AltName:
            Full=Replicase; AltName: Full=Transcriptase; Includes:
            RecName: Full=RNA-directed RNA polymerase; Includes:
            RecName: Full=mRNA (guanine-N(7)-)-methyltransferase;
            Includes: RecName: Full=GDP
            polyribonucleotidyltransferase; Includes: RecName:
            Full=Cap-specific mRNA
            (nucleoside-2'-O-)-methyltransferase 2
 emb|CAG34091.1| putative polymerase [Lettuce necrotic yellows virus]
 emb|CAI30426.1| RNA-dependent RNA polymerase [Lettuce necrotic yellows virus]
          Length = 2068

 Score = 63.9 bits (154), Expect = 6e-09
 Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
 Frame = -2

Query: 442  ARWKCSS-DKRKTLATELDVIRYLDSLLIRSESDSMAGLAMVYGWEETYNLMNFDSSIVL 266
            A W+C S    KT  TE  + R  ++++  +      G+   + W  +         I  
Sbjct: 1421 AEWRCMSLSDWKTPTTEA-ISRAAEAIIGDTPISRWYGVTGFFSWPSSMERYYVYPEIQE 1479

Query: 265  PNTVPASLASACESVRRTLINMIRKKTEVRERERMYFTEDVKNNKFIHKLMFSDYVKQIT 86
            P+++P +  SAC SVR +L+ ++    + R R    F+ED K +K   KLM  D+VK+  
Sbjct: 1480 PDSIPVTALSACRSVRNSLLGLLGSSRKFRGRNTRIFSEDAKASKLSLKLMVYDWVKKKK 1539

Query: 85   SCDACILEVYLCDSLNITTDL 23
             C AC  E+ +  +  +++ L
Sbjct: 1540 KCRACHREIGIMSAHQLSSTL 1560


>ref|YP_009301361.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
 gb|AJG39191.1| RNA-dependent RNA polymerase [Wuhan Insect virus 6]
          Length = 2079

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 35/124 (28%), Positives = 60/124 (48%)
 Frame = -2

Query: 442  ARWKCSSDKRKTLATELDVIRYLDSLLIRSESDSMAGLAMVYGWEETYNLMNFDSSIVLP 263
            A W         L+ + D+ R L ++L  +   S  GL M Y WEE+ + M+    ++ P
Sbjct: 1423 AEWGVIKSGHVGLSMDDDIKRTLINILENANPTSFLGLGMFYCWEESSSRMDVYPEMIRP 1482

Query: 262  NTVPASLASACESVRRTLINMIRKKTEVRERERMYFTEDVKNNKFIHKLMFSDYVKQITS 83
            NT P S ASACE++++ +I +   +            ++ K N  I K+   +Y+K  + 
Sbjct: 1483 NTNPISSASACEAMQKNMIGLSLGRKWKDSNRIAILADEEKYNFVIVKMFLYNYLKSHSQ 1542

Query: 82   CDAC 71
            C+ C
Sbjct: 1543 CNLC 1546