BLASTX nr result

ID: Ophiopogon24_contig00037522 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00037522
         (454 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONK77811.1| uncharacterized protein A4U43_C02F10940 [Asparagu...    57   1e-06
gb|KMZ66123.1| putative DNA primase large subunit [Zostera marina]     55   7e-06

>gb|ONK77811.1| uncharacterized protein A4U43_C02F10940 [Asparagus officinalis]
          Length = 495

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 41/86 (47%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
 Frame = -3

Query: 437 QIAKSYYFFPKF--FP-IFLSISKSMEIVRSKRTSIAGVTSTLNNLLLYRFITTLKVCLD 267
           Q  KS  F P+F  +P + LS+ KSMEI+RSKR S A    T  ++ LYR    ++V +D
Sbjct: 22  QPPKSPSFLPQFSLYPSLSLSLEKSMEILRSKRASTAEA-QTPRSIPLYRSAPDIEVRID 80

Query: 266 YFELYAIDRLRVTQ-ISSFFVRSRNP 192
            FELYAIDRLRV + IS    R + P
Sbjct: 81  DFELYAIDRLRVLKGISDGLSRGKKP 106


>gb|KMZ66123.1| putative DNA primase large subunit [Zostera marina]
          Length = 451

 Score = 55.1 bits (131), Expect = 7e-06
 Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
 Frame = -3

Query: 371 MEIVRSKRTSIAGVTSTLNNLLLYRFITTLKVCLDYFELYAIDRLRVTQ-ISSFFVRSRN 195
           MEI+RS R SI  V + + NLLLYR    L+V LD FE+YAIDRL+V + IS    R + 
Sbjct: 1   MEILRSHRKSIGKVDAVVPNLLLYRTAPVLEVRLDEFEIYAIDRLKVLKGISDALSRGKK 60

Query: 194 P 192
           P
Sbjct: 61  P 61


Top