BLASTX nr result

ID: Ophiopogon24_contig00036746 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00036746
         (468 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020273202.1| protein SCAR4 isoform X2 [Asparagus officina...    65   4e-09
ref|XP_020273201.1| protein SCAR4 isoform X1 [Asparagus officina...    65   4e-09

>ref|XP_020273202.1| protein SCAR4 isoform X2 [Asparagus officinalis]
          Length = 1186

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
 Frame = +1

Query: 184  QQPDSVGTVTDDAFLKXXXXXXXXXXXXXXXWRTNQLQMEHLASHLKMAQSSIGQNLLTA 363
            Q P    ++ D +  +               WR ++LQM H  SH+K+AQS IGQN  TA
Sbjct: 898  QHPSGSESIIDSSVQETMEELPPMPPLPPLEWRMSKLQMGHPTSHIKIAQSYIGQNQFTA 957

Query: 364  MSTTDERPSHALLTEKGTTVQKS---IPFALLQGFEE 465
            + TTDE+PS+  LT +G TVQKS    PF  L+   E
Sbjct: 958  L-TTDEKPSYDSLTARGATVQKSSLLSPFLSLEDNSE 993


>ref|XP_020273201.1| protein SCAR4 isoform X1 [Asparagus officinalis]
 gb|ONK62638.1| uncharacterized protein A4U43_C07F6270 [Asparagus officinalis]
          Length = 1187

 Score = 64.7 bits (156), Expect = 4e-09
 Identities = 39/97 (40%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
 Frame = +1

Query: 184  QQPDSVGTVTDDAFLKXXXXXXXXXXXXXXXWRTNQLQMEHLASHLKMAQSSIGQNLLTA 363
            Q P    ++ D +  +               WR ++LQM H  SH+K+AQS IGQN  TA
Sbjct: 899  QHPSGSESIIDSSVQETMEELPPMPPLPPLEWRMSKLQMGHPTSHIKIAQSYIGQNQFTA 958

Query: 364  MSTTDERPSHALLTEKGTTVQKS---IPFALLQGFEE 465
            + TTDE+PS+  LT +G TVQKS    PF  L+   E
Sbjct: 959  L-TTDEKPSYDSLTARGATVQKSSLLSPFLSLEDNSE 994


Top