BLASTX nr result
ID: Ophiopogon24_contig00035842
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00035842
(542 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum] 61 5e-12
gb|PPD70354.1| hypothetical protein GOBAR_DD32770 [Gossypium bar... 52 2e-11
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 56 4e-11
gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense] 58 4e-11
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 57 5e-11
gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group... 55 2e-10
gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposo... 55 2e-10
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 56 3e-10
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 55 4e-10
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 52 4e-10
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 55 4e-10
gb|ASR75372.1| retrotransposon protein [Oryza nivara] 54 7e-10
gb|PON40738.1| hypothetical protein TorRG33x02_339640, partial [... 63 1e-09
dbj|BAH93480.1| Os06g0316600 [Oryza sativa Japonica Group] 53 3e-09
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 52 3e-09
gb|KYP31293.1| Retrovirus-related Pol polyprotein from transposo... 50 5e-09
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 50 7e-09
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 50 7e-09
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo... 49 1e-08
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 53 2e-08
>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
Length = 707
Score = 60.8 bits (146), Expect(2) = 5e-12
Identities = 33/76 (43%), Positives = 45/76 (59%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
GG+VLMGN + +GTI++ H G + TL +RHVP NLISL TL S+ +
Sbjct: 310 GGLVLMGNDAQCKVVGKGTIKIKTHDGVVRTLTSVRHVPDLKRNLISLGTLESQGCRYSA 369
Query: 125 EGGCLETSKDIHIMFK 78
EGG L+ SK ++ K
Sbjct: 370 EGGVLKVSKGALVLLK 385
Score = 37.4 bits (85), Expect(2) = 5e-12
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Frame = -2
Query: 541 CNYCKRKRH-ICLIASLQNKQKSDD-----QESNTIGVAIVKDDDLVLSITYESINAKNR 380
C YCK++ H I L+NKQ +D ++S + D + +KN
Sbjct: 225 CRYCKKRNHEISECYKLKNKQNREDKGKQPEKSAEASFVETESDGECFIASGTEQRSKNE 284
Query: 379 WILDSGFSHHIN 344
W+LDSG + H++
Sbjct: 285 WVLDSGCTFHMS 296
>gb|PPD70354.1| hypothetical protein GOBAR_DD32770 [Gossypium barbadense]
Length = 1042
Score = 52.0 bits (123), Expect(2) = 2e-11
Identities = 30/86 (34%), Positives = 47/86 (54%)
Frame = -1
Query: 329 FSACNLV*GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLG 150
F+ +V GV+L+GN GTI++ G + TL +RHVPK NLISL T+
Sbjct: 782 FTTYEIVFEGVILIGNNASCKIACVGTIKVKMFDGVVRTLSGVRHVPKLKRNLISLSTID 841
Query: 149 SEVFTFKMEGGCLETSKDIHIMFKTE 72
S+ + ++ E G L+ K ++ K +
Sbjct: 842 SKGYKYRTESGVLKIFKGSLVVIKRQ 867
Score = 43.9 bits (102), Expect(2) = 2e-11
Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Frame = -2
Query: 541 CNYCKRKRHI-CLIASLQNKQKSD------DQESNTIGVAIVKD--DDLVLSITYESINA 389
CN+CK+KRHI LQNK K + Q N IV+D D +L + +
Sbjct: 702 CNFCKKKRHIKSKCYKLQNKIKREAANQNRKQPKNFTKADIVEDYGDGELLVASINNSKV 761
Query: 388 KNRWILDSGFSHHIN 344
WILDSG++ HI+
Sbjct: 762 SKEWILDSGYTFHIS 776
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 609
Score = 56.2 bits (134), Expect(2) = 4e-11
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
GG V MGN + I GTIQ+ H G I TL ++RHVP NLIS+ L ++ F +
Sbjct: 239 GGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLHTKGFKCNV 298
Query: 125 EGGCLETSKDIHIMFK 78
EGG +E SK ++ +
Sbjct: 299 EGGVMEISKGSTVVIR 314
Score = 38.9 bits (89), Expect(2) = 4e-11
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -2
Query: 541 CNYCKRKRHICLIASLQNKQKSDDQESNTIGVAIVKD----DDLVLSITYESINAKNRWI 374
CNYCK H + QKS + VA +D ++LVLSI ++ +W+
Sbjct: 163 CNYCKEPGHWKKDCPKKRNQKS-------VAVAAQEDSSFENELVLSIVDNHQHSAEQWV 215
Query: 373 LDSGFSHHI 347
LDSG S+H+
Sbjct: 216 LDSGCSYHM 224
>gb|PHU12529.1| hypothetical protein BC332_19459 [Capsicum chinense]
Length = 448
Score = 57.8 bits (138), Expect(2) = 4e-11
Identities = 32/86 (37%), Positives = 52/86 (60%)
Frame = -1
Query: 335 EVFSACNLV*GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLET 156
++FS + V GGV+L+GN + + GT+++ H G + TL+++R+VP+ NLISL T
Sbjct: 116 DLFSTYDPVEGGVILVGNNVACKIVGTGTVRIKMHDGIVRTLKNVRYVPELKKNLISLGT 175
Query: 155 LGSEVFTFKMEGGCLETSKDIHIMFK 78
L S + EGG E S+ ++ K
Sbjct: 176 LESFGCKYTGEGGVFEVSRGGLVVMK 201
Score = 37.4 bits (85), Expect(2) = 4e-11
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Frame = -2
Query: 541 CNYCKRKRHICL-IASLQNK---QKSDDQESNTIGVAIVKDD--DLVLSITYESINAKNR 380
C YC +K HI LQNK +K++ +S+T ++ D+ + +T + N
Sbjct: 41 CYYCHKKGHIKFNCPKLQNKGKVKKNEHGDSDTAEASVAADEIEGAIFLVTENISCSNNE 100
Query: 379 WILDSGFSHHI 347
WILDS S H+
Sbjct: 101 WILDSACSFHM 111
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 690
Score = 56.6 bits (135), Expect(2) = 5e-11
Identities = 35/86 (40%), Positives = 47/86 (54%)
Frame = -1
Query: 335 EVFSACNLV*GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLET 156
++F+ V GVVLMGN GTIQ+ H G+I TL ++R +P NLISL T
Sbjct: 302 DLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGT 361
Query: 155 LGSEVFTFKMEGGCLETSKDIHIMFK 78
L S + EGG L+ SK ++ K
Sbjct: 362 LESLGCKYSAEGGVLKVSKGAIVLLK 387
Score = 38.1 bits (87), Expect(2) = 5e-11
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = -2
Query: 541 CNYCKRKRHI---CLIASLQNKQKSDDQESNTIGVAIVKDD---DLVLSITYESINAKNR 380
C YCK+ H C I L+ KQ+ ++ N A V+ D D+++S++ + +K
Sbjct: 230 CRYCKKFGHDISDCFI--LKKKQERQEKGKNPAEAANVETDSDGDVMISVSSDK-RSKTE 286
Query: 379 WILDSGFSHHI 347
WILDSG + H+
Sbjct: 287 WILDSGCTFHM 297
>gb|AAT01387.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAT44170.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1175
Score = 55.5 bits (132), Expect(2) = 2e-10
Identities = 28/69 (40%), Positives = 42/69 (60%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
G VV MG+ P + G++Q+ H G TL+D+RH+P+ NLISL TL +E + +
Sbjct: 213 GDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPRMARNLISLSTLDAEGYKYSG 272
Query: 125 EGGCLETSK 99
GG ++ SK
Sbjct: 273 SGGVVKVSK 281
Score = 37.7 bits (86), Expect(2) = 2e-10
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 541 CNYCKRKRHICLIA-SLQNKQK-SDDQESNTIGVAIVKDDDLVLSITYESINAKNRWILD 368
C YCK+K H LQNK+K D +++ + A D L + +++ + WILD
Sbjct: 131 CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSADNSDSGDCLVVFVVCVSSHDEWILD 190
Query: 367 SGFSHHI 347
+ S HI
Sbjct: 191 TTCSFHI 197
>gb|KYP50611.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 448
Score = 54.7 bits (130), Expect(2) = 2e-10
Identities = 30/76 (39%), Positives = 43/76 (56%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
GG V MGN +P + GTIQL H G I TL ++RHVP NLIS+ L S+ F +
Sbjct: 78 GGRVFMGNDMPCKTVGIGTIQLRMHDGVIRTLTEVRHVPDLKKNLISVGVLDSKGFKCNV 137
Query: 125 EGGCLETSKDIHIMFK 78
+ G +E + ++ +
Sbjct: 138 KNGVMEIKRGSTVVMR 153
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = -2
Query: 541 CNYCKRKRHICLIASLQNKQKSDD---QESNTIGVAIVKDDDLVLSITYESINAKNRWIL 371
CNYCK H + QK QES + D++LVLSI + ++W+L
Sbjct: 1 CNYCKEPGHWKNDCPKKKNQKPTAVTVQESTSSS-----DNELVLSIVDNHQQSADQWVL 55
Query: 370 DSGFSHHI 347
DSG S+H+
Sbjct: 56 DSGCSYHM 63
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 593
Score = 56.2 bits (134), Expect(2) = 3e-10
Identities = 32/76 (42%), Positives = 44/76 (57%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
GG V MGN + I GTIQ+ H G I TL ++RHVP NLIS+ L ++ F +
Sbjct: 291 GGDVFMGNDMACKTISIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVGVLDTKGFKCNV 350
Query: 125 EGGCLETSKDIHIMFK 78
EGG +E +K I+ +
Sbjct: 351 EGGVMEINKGSTIVIR 366
Score = 36.2 bits (82), Expect(2) = 3e-10
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = -2
Query: 541 CNYCKRKRHICLIASLQNKQKSDDQESNTIGVAIVKD----DDLVLSITYESINAKNRWI 374
CNYCK H + QKS + VA +D ++LVLSI + +W+
Sbjct: 215 CNYCKEPGHWKKDCPKKRNQKS-------VVVAAQEDSSFENELVLSIVDNHQHFVEQWV 267
Query: 373 LDSGFSHHI 347
LDSG S+H+
Sbjct: 268 LDSGCSYHM 276
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 54.7 bits (130), Expect(2) = 4e-10
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
G VV MG+ P + G++Q+ H G TL+D+RH+P NLISL TL +E + +
Sbjct: 318 GDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSS 377
Query: 125 EGGCLETSK 99
GG ++ SK
Sbjct: 378 SGGVVKVSK 386
Score = 37.0 bits (84), Expect(2) = 4e-10
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 541 CNYCKRKRHICLIA-SLQNKQK-SDDQESNTIGVAIVKDDDLVLSITYESINAKNRWILD 368
C YCK+K H LQNK+K D +++ + A D L + + + + WILD
Sbjct: 236 CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILD 295
Query: 367 SGFSHHI 347
+ S HI
Sbjct: 296 TACSFHI 302
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 51.6 bits (122), Expect(2) = 4e-10
Identities = 31/88 (35%), Positives = 46/88 (52%)
Frame = -1
Query: 341 RDEVFSACNLV*GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISL 162
R E F+ V GG + M N + G+I++ H GS TL ++RHVP NLISL
Sbjct: 292 RREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLISL 351
Query: 161 ETLGSEVFTFKMEGGCLETSKDIHIMFK 78
L S+ F++ + G L K +++ K
Sbjct: 352 SLLDSKGFSWSGKDGVLRVWKGSNLILK 379
Score = 40.0 bits (92), Expect(2) = 4e-10
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = -2
Query: 541 CNYCKRKRHICLIASLQNKQKSDDQESNTIGVAIVKDDDLVLSITYESINAKNRWILDSG 362
CNYCK K H + KQ S + ++ + + E + + W+LDSG
Sbjct: 225 CNYCKEKGHWKFDCPKKKKQSEKQSVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSG 284
Query: 361 FSHHI 347
S+HI
Sbjct: 285 ASYHI 289
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 55.5 bits (132), Expect(2) = 4e-10
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
G VV MGN P + G++Q+ H G TL+D+RH+P NLISL TL +E + +
Sbjct: 318 GDVVRMGNDNPREIVGIGSVQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSG 377
Query: 125 EGGCLETSK 99
GG ++ SK
Sbjct: 378 SGGVVKVSK 386
Score = 36.2 bits (82), Expect(2) = 4e-10
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 541 CNYCKRKRHICLIA-SLQNKQK-SDDQESNTIGVAIVKDDDLVLSITYESINAKNRWILD 368
C YCK+K H LQNK+K D +++ + A D L + + + + WILD
Sbjct: 236 CKYCKKKIHFIKECWKLQNKEKRKSDGKASVVTSAKNSDSGDCLVVFAGCVASHDEWILD 295
Query: 367 SGFSHHI 347
+ S HI
Sbjct: 296 TACSFHI 302
>gb|ASR75372.1| retrotransposon protein [Oryza nivara]
Length = 1170
Score = 53.9 bits (128), Expect(2) = 7e-10
Identities = 28/69 (40%), Positives = 41/69 (59%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
G VV MG+ P + G++Q+ H G TL+D+RH+P NLISL TL +E + +
Sbjct: 319 GDVVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSG 378
Query: 125 EGGCLETSK 99
GG ++ SK
Sbjct: 379 SGGVVKVSK 387
Score = 37.0 bits (84), Expect(2) = 7e-10
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 541 CNYCKRKRHICLIA-SLQNKQK-SDDQESNTIGVAIVKDDDLVLSITYESINAKNRWILD 368
C YCK+K H LQNK+K D +++ + A D L + + + + WILD
Sbjct: 237 CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGCVASHDEWILD 296
Query: 367 SGFSHHI 347
+ S HI
Sbjct: 297 TACSFHI 303
>gb|PON40738.1| hypothetical protein TorRG33x02_339640, partial [Trema orientalis]
Length = 120
Score = 63.2 bits (152), Expect = 1e-09
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = -1
Query: 329 FSACNLV*GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLG 150
FS V G+VLMGN PY GT+++ G I TL +RHVP NLISL TL
Sbjct: 11 FSTYETVSKGIVLMGNNAPYKVASIGTVKIKMFDGVIRTLGGVRHVPDLKRNLISLSTLD 70
Query: 149 SEVFTFKMEGGCLETSKDIHIMFK 78
S+ + + EGG L+ SK ++ K
Sbjct: 71 SKGYKYTSEGGVLKVSKGALVVMK 94
>dbj|BAH93480.1| Os06g0316600 [Oryza sativa Japonica Group]
Length = 759
Score = 52.8 bits (125), Expect(2) = 3e-09
Identities = 29/69 (42%), Positives = 40/69 (57%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
G VV MG+ P + G++Q+ H G TL+D RH+P NLISL TL SE + +
Sbjct: 247 GDVVRMGDDNPRGIMGIGSVQIKTHDGMTRTLKDARHIPGMARNLISLSTLDSEGYKYSG 306
Query: 125 EGGCLETSK 99
GG ++ SK
Sbjct: 307 SGGVVKVSK 315
Score = 36.2 bits (82), Expect(2) = 3e-09
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 541 CNYCKRKRH-ICLIASLQNKQKSD-DQESNTIGVAIVKDDDLVLSITYESINAKNRWILD 368
C YCK+K H I LQNK+K D +++ + A D L + + + + WILD
Sbjct: 165 CKYCKKKNHFIEECWKLQNKEKRKYDGKASVVTSADNSDSGDCLVVFAGCVASHDEWILD 224
Query: 367 SGFSHHI 347
+ S HI
Sbjct: 225 TACSFHI 231
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1322
Score = 52.0 bits (123), Expect(2) = 3e-09
Identities = 27/67 (40%), Positives = 40/67 (59%)
Frame = -1
Query: 299 VVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKMEG 120
VV MG+ P + G++Q+ H G TL+D+RH+P NLISL TL +E + + G
Sbjct: 320 VVRMGDDNPREIVGIGSVQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSG 379
Query: 119 GCLETSK 99
G ++ SK
Sbjct: 380 GVVKVSK 386
Score = 36.6 bits (83), Expect(2) = 3e-09
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 541 CNYCKRKRHICLIA-SLQNKQK-SDDQESNTIGVAIVKDDDLVLSITYESINAKNRWILD 368
C YCK+K H LQNK+K D +++ + A D L + + + + WILD
Sbjct: 236 CKYCKKKNHFIEECWKLQNKEKRKSDGKASVVTSAENSDSGDCLVVFAGYVASHDEWILD 295
Query: 367 SGFSHHI 347
+ S HI
Sbjct: 296 TACSFHI 302
>gb|KYP31293.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 569
Score = 50.4 bits (119), Expect(2) = 5e-09
Identities = 29/77 (37%), Positives = 43/77 (55%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
GG V MGN +P + GTIQL H G I TL ++RHV NLIS+ L S+ F +
Sbjct: 216 GGRVFMGNDMPCKTVGIGTIQLRMHDGVIRTLTEVRHVLDLKKNLISVGVLDSKGFKCNV 275
Query: 125 EGGCLETSKDIHIMFKT 75
+ G ++ + I+ ++
Sbjct: 276 KNGVMDIKRGSTIVMRS 292
Score = 37.7 bits (86), Expect(2) = 5e-09
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Frame = -2
Query: 541 CNYCK-----------RKRHICLIASLQNKQKSDDQESNTIGVAIVKDDDLVLSITYESI 395
CNYCK +K H IAS+Q S + E LVLSI
Sbjct: 139 CNYCKEPSHWKNDCPKKKNHKPTIASVQESTTSSNNE-------------LVLSIVDNHQ 185
Query: 394 NAKNRWILDSGFSHHI 347
+ ++W+LDSG S+H+
Sbjct: 186 QSADQWVLDSGCSYHM 201
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 50.4 bits (119), Expect(2) = 7e-09
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = -1
Query: 302 GVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKME 123
G VLMGN + GT+++ G + TL D+RH+P+ NLISL TL + F + E
Sbjct: 813 GSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAE 872
Query: 122 GGCLE 108
GG L+
Sbjct: 873 GGVLK 877
Score = 37.0 bits (84), Expect(2) = 7e-09
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = -2
Query: 541 CNYCKRKRHICLIASLQNKQKSDDQE-----SNTIGVAIVKDDDLVLSITYESINAKNRW 377
C YCK+ H+ + + K+KS+ QE +N D ++VL+++ A RW
Sbjct: 732 CYYCKKYGHM-KVDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVS--DSYAGGRW 788
Query: 376 ILDSGFSHHIN 344
ILD+G + HI+
Sbjct: 789 ILDTGATFHIS 799
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 50.4 bits (119), Expect(2) = 7e-09
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = -1
Query: 302 GVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKME 123
G VLMGN + GT+++ G + TL D+RH+P+ NLISL TL + F + E
Sbjct: 834 GSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAE 893
Query: 122 GGCLE 108
GG L+
Sbjct: 894 GGVLK 898
Score = 37.0 bits (84), Expect(2) = 7e-09
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Frame = -2
Query: 541 CNYCKRKRHICLIASLQNKQKSDDQE-----SNTIGVAIVKDDDLVLSITYESINAKNRW 377
C YCK+ H+ + + K+KS+ QE +N D ++VL+++ A RW
Sbjct: 753 CYYCKKYGHM-KVDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVS--DSYAGGRW 809
Query: 376 ILDSGFSHHIN 344
ILD+G + HI+
Sbjct: 810 ILDTGATFHIS 820
>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 365
Score = 49.3 bits (116), Expect(2) = 1e-08
Identities = 34/91 (37%), Positives = 48/91 (52%)
Frame = -1
Query: 344 FRDEVFSACNLV*GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLIS 165
FRD FS ++ GG V+MGN ++ GTI++ G I TL ++RHVP LIS
Sbjct: 182 FRDW-FSTYSIHDGGRVIMGNNSECKSVGIGTIKIKMFDGVIRTLTEVRHVPDLRKGLIS 240
Query: 164 LETLGSEVFTFKMEGGCLETSKDIHIMFKTE 72
L TL + TF G ++ K ++ K E
Sbjct: 241 LGTLDASGCTFIGSDGIIKVKKGAPVVMKGE 271
Score = 37.7 bits (86), Expect(2) = 1e-08
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Frame = -2
Query: 541 CNYCKRKRHI---CLIASLQNKQKSDDQESNTIGVAIVKDDDLVLSITYESINAKNRWIL 371
C YCK++ H C S Q +QK +E++ + + KD + + T+ +++ + WIL
Sbjct: 115 CYYCKKEGHWKRDCPKKSKQQQQKKSGEEAS-VASRLEKDSETLC--TFSCMDSSDSWIL 171
Query: 370 DSGFSHHI 347
DS S+H+
Sbjct: 172 DSDCSYHM 179
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 53.1 bits (126), Expect(2) = 2e-08
Identities = 32/76 (42%), Positives = 41/76 (53%)
Frame = -1
Query: 305 GGVVLMGNYIPYNAIDQGTIQLC*HVGSITTLEDIRHVPKSWFNLISLETLGSEVFTFKM 126
GGVV MGN P + G+I+L H GS L D+R+VPK NLISL L S+ M
Sbjct: 249 GGVVYMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTM 308
Query: 125 EGGCLETSKDIHIMFK 78
G L+ + +M K
Sbjct: 309 RDGILKATLGALVMLK 324
Score = 33.1 bits (74), Expect(2) = 2e-08
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -2
Query: 541 CNYCKRKRHICLIASLQNKQKSDDQESNTIGVAIVKDDDLVLSITYESINAKNRWILDSG 362
C +C K H K++ Q++N + D+ L ++ + + + WILDSG
Sbjct: 170 CAFCHEKGHWKKDCPKLQKKEKVPQDANVAECKSDVESDISLIVSLSASSYPDEWILDSG 229
Query: 361 FSHHI 347
++H+
Sbjct: 230 CTYHM 234