BLASTX nr result
ID: Ophiopogon24_contig00034693
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00034693
(555 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004301329.1| PREDICTED: uncharacterized protein LOC101296... 71 8e-19
dbj|BAM42646.1| polyprotein [Arabidopsis thaliana] 75 2e-18
dbj|BAA78426.1| polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM44534.1| polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM42647.1| polyprotein [Arabidopsis thaliana] >gi|403406144... 74 3e-18
dbj|BAA78427.1| polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM44532.1| polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM44531.1| polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM44530.1| polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM44529.1| polyprotein [Arabidopsis thaliana] 74 3e-18
dbj|BAM44535.1| polyprotein [Arabidopsis thaliana] 74 4e-18
gb|PKU78648.1| Retrovirus-related Pol polyprotein from transposo... 69 4e-18
ref|XP_020702030.1| uncharacterized protein LOC110113695 [Dendro... 69 4e-18
sp|Q9ZT94.1|POLR2_ARATH RecName: Full=Retrovirus-related Pol pol... 74 5e-18
dbj|BAA78424.1| polyprotein [Arabidopsis thaliana] >gi|404433798... 74 5e-18
gb|PKU87466.1| Retrovirus-related Pol polyprotein from transposo... 65 4e-17
ref|XP_008246085.1| PREDICTED: flocculation protein FLO11-like [... 65 4e-17
gb|PKU70985.1| Retrovirus-related Pol polyprotein from transposo... 68 5e-17
>ref|XP_004301329.1| PREDICTED: uncharacterized protein LOC101296391 [Fragaria vesca
subsp. vesca]
Length = 323
Score = 70.9 bits (172), Expect(2) = 8e-19
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = -1
Query: 270 CSNRLLRMNYAFQDKHPSQRLAAMVAHSNANAN-TWIADTGATDHITGDLSNLSVHADYQ 94
C NRL N +FQ + PS+ L+AM A + A TW+ D+GA HIT DL NL +YQ
Sbjct: 195 CYNRL---NLSFQGRVPSRNLSAMAASGSTPAPPTWLLDSGANSHITSDLGNLQNPKEYQ 251
Query: 93 GNNQI-SVANGKTLPIKHIGSSLLPTLLHNF 4
GN+++ + N L I H GS+ L T H F
Sbjct: 252 GNDRVGGIGNETPLSISHTGSTTLSTPTHTF 282
Score = 50.4 bits (119), Expect(2) = 8e-19
Identities = 42/113 (37%), Positives = 52/113 (46%), Gaps = 12/113 (10%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLL---TLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVR 384
L +LLLS E I + + L +L HA G G P PNY R
Sbjct: 91 LEALLLSAERRIKDQQQAALDVSSLTTAFHAAQISPRGGRGRGRGP------PNYY-TAR 143
Query: 383 NYNPNYTRFAP-NKTK------PPPTGSS--NQRERPICQICSKVGHVAIDCY 252
N N+ R P N+ + P P+ SS N + RP CQICSK GH A+DCY
Sbjct: 144 NPTSNFGRGFPLNRGRGASVLGPHPSSSSLFNNQARPTCQICSKTGHTALDCY 196
>dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 74.7 bits (182), Expect(2) = 2e-18
Identities = 33/68 (48%), Positives = 45/68 (66%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS+H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 2e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAA78426.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM44534.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM42649.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM42647.1| polyprotein [Arabidopsis thaliana]
dbj|BAM42648.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAA78427.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM44532.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM44531.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM44530.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM44529.1| polyprotein [Arabidopsis thaliana]
Length = 1421
Score = 73.9 bits (180), Expect(2) = 3e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.4 bits (106), Expect(2) = 3e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 290
>dbj|BAM44535.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 73.9 bits (180), Expect(2) = 4e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 311 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 370
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 371 TGSASLPT 378
Score = 45.1 bits (105), Expect(2) = 4e-18
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L+++E +L N E+ P N V + +N N N G RNYN
Sbjct: 199 IHERLINQESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 247
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 248 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHNAKRC 290
>gb|PKU78648.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1368
Score = 68.9 bits (167), Expect(2) = 4e-18
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -1
Query: 219 SQRLAAMVAHSNANANT-WIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
S+ + A +A N N++ WI D+GA++H+T DLSNL A+YQG + +S+ANG LP+ H
Sbjct: 315 SRSMNAFLAQQNQNSSQDWILDSGASNHLTPDLSNLHYPANYQGTDNVSIANGSQLPVVH 374
Query: 42 IGSSLLP 22
G LLP
Sbjct: 375 SGQGLLP 381
Score = 50.1 bits (118), Expect(2) = 4e-18
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALN-TVVNSGNKDGVKPSFSNYNPNYEGKVRNY 378
L+SLL SEEI + + + + AL T +N N P GK R
Sbjct: 211 LYSLLCSEEIIVNQEISKESSTAVGATALYATSINQSR---------NRPPRKFGKTRTP 261
Query: 377 NPNYTRFAPNKTKPPPTGSSNQRERPICQICSKVGHVAIDCY 252
T N T P +S RP CQIC+K+GH+A++C+
Sbjct: 262 PVGQTLLPANSTPVTPNSASANMARPTCQICNKIGHIALNCW 303
>ref|XP_020702030.1| uncharacterized protein LOC110113695 [Dendrobium catenatum]
Length = 404
Score = 68.9 bits (167), Expect(2) = 4e-18
Identities = 32/67 (47%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = -1
Query: 219 SQRLAAMVAHSNANANT-WIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
S+ + A +A N N++ WI D+GA++H+T DLSNL A+YQG + +S+ANG LP+ H
Sbjct: 319 SRSMNAFLAQQNQNSSQDWILDSGASNHLTPDLSNLHYPANYQGTDSVSIANGSQLPVVH 378
Query: 42 IGSSLLP 22
G LLP
Sbjct: 379 SGQGLLP 385
Score = 50.1 bits (118), Expect(2) = 4e-18
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALN-TVVNSGNKDGVKPSFSNYNPNYEGKVRNY 378
L+SLL SEEI + + + + AL T +N N P GK R
Sbjct: 215 LYSLLCSEEIIVNQEISKESSTAVGATALYATSINQSR---------NRPPRKFGKTRTP 265
Query: 377 NPNYTRFAPNKTKPPPTGSSNQRERPICQICSKVGHVAIDCY 252
T N T P +S RP CQIC+K+GH+A++C+
Sbjct: 266 PVGQTLLPANSTPVTPNSASANMARPTCQICNKIGHIALNCW 307
>sp|Q9ZT94.1|POLR2_ARATH RecName: Full=Retrovirus-related Pol polyprotein from transposon
RE2; AltName: Full=Retro element 2; Short=AtRE2;
Includes: RecName: Full=Protease RE2; Includes: RecName:
Full=Reverse transcriptase RE2; Includes: RecName:
Full=Endonuclease RE2
gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidopsis thaliana]
emb|CAB77781.1| putative polyprotein of LTR transposon [Arabidopsis thaliana]
Length = 1456
Score = 73.9 bits (180), Expect(2) = 5e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 292 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 351
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 352 TGSASLPT 359
Score = 44.7 bits (104), Expect(2) = 5e-18
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L++ E +L N E+ P N V + +N N N G RNYN
Sbjct: 180 IHERLINRESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 228
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 229 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 271
>dbj|BAA78424.1| polyprotein [Arabidopsis thaliana]
dbj|BAM44533.1| polyprotein [Arabidopsis thaliana]
Length = 1330
Score = 73.9 bits (180), Expect(2) = 5e-18
Identities = 33/68 (48%), Positives = 44/68 (64%)
Frame = -1
Query: 222 PSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISVANGKTLPIKH 43
P Q A + +S NAN W+ D+GAT HIT D +NLS H Y G + + +A+G T+PI H
Sbjct: 166 PWQPRANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITH 225
Query: 42 IGSSLLPT 19
GS+ LPT
Sbjct: 226 TGSASLPT 233
Score = 44.7 bits (104), Expect(2) = 5e-18
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
+H L++ E +L N E+ P N V + +N N N G RNYN
Sbjct: 54 IHERLINRESKLLALNSA----EVVPITANVVTHRNTN-------TNRNQNNRGDNRNYN 102
Query: 374 PNYTRFAPNKTKPPPTGSSNQRERPI-----CQICSKVGHVAIDC 255
N R N +P +GS + +P CQICS GH A C
Sbjct: 103 NNNNR--SNSWQPSSSGSRSDNRQPKPYLGRCQICSVQGHSAKRC 145
>gb|PKU87466.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1240
Score = 65.5 bits (158), Expect(2) = 4e-17
Identities = 32/77 (41%), Positives = 44/77 (57%)
Frame = -1
Query: 252 RMNYAFQDKHPSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISV 73
R N + P + A + H+ A+ WI D+GA+ H+T DLSNL+ Y G IS
Sbjct: 175 RNNPKYAPTIPLPQRALLSQHNPASTKDWILDSGASSHLTPDLSNLNQGTSYHGPETIST 234
Query: 72 ANGKTLPIKHIGSSLLP 22
A+G TLPI+H G +LP
Sbjct: 235 ASGTTLPIQHSGQGILP 251
Score = 50.1 bits (118), Expect(2) = 4e-17
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTV-VNSGNKDGVKPSFSNYNPNYEGKVRNY 378
L+SLL SEEI + + +K + A T NS +GV +F N ++ + +Y
Sbjct: 83 LYSLLCSEEIAMQREHKKETGVNSDNPAFYTSRTNSNRGNGVNRNFKN--KKFDNRSNSY 140
Query: 377 NPNYTRFAPNKTKPPPTGSSNQRERPICQICSKVGHVAIDCY 252
T+P P S+++ +RP CQIC K H+A++C+
Sbjct: 141 YA---------TQPQPQQSASKTDRPTCQICVKSDHIALNCW 173
>ref|XP_008246085.1| PREDICTED: flocculation protein FLO11-like [Prunus mume]
Length = 260
Score = 65.1 bits (157), Expect(2) = 4e-17
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 17/89 (19%)
Frame = -1
Query: 252 RMNYAFQDKHPSQRLAAMVAHS-----------------NANANTWIADTGATDHITGDL 124
R+N AFQ P L S + + TW AD+GAT+HIT +L
Sbjct: 160 RLNMAFQGPTPPSSLTQNTTPSILGPYNPSASFTSFAPPSTSTTTWYADSGATNHITNNL 219
Query: 123 SNLSVHADYQGNNQISVANGKTLPIKHIG 37
+NLS+ + YQGN I+VANG+ +PI H G
Sbjct: 220 ANLSLPSPYQGNESITVANGQHMPISHTG 248
Score = 50.4 bits (119), Expect(2) = 4e-17
Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = -2
Query: 554 LHSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYN 375
LH LLLSEEI + R + + HA + +S + P N + +
Sbjct: 58 LHGLLLSEEIAVENRLTHIPPSDSHLHAFHASQSSASS-APSPHALNTSSQSSRSFPRSH 116
Query: 374 PNYTRFAPNKTKPPPTG-SSNQRERPICQICSKVGHVAIDC 255
+++ PN P PT +SN +P CQICSK+GH A+ C
Sbjct: 117 SSFSSSRPNNFTPRPTHYNSNFSRKPKCQICSKLGHSALTC 157
>gb|PKU70985.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1379
Score = 67.8 bits (164), Expect(2) = 5e-17
Identities = 33/77 (42%), Positives = 45/77 (58%)
Frame = -1
Query: 252 RMNYAFQDKHPSQRLAAMVAHSNANANTWIADTGATDHITGDLSNLSVHADYQGNNQISV 73
R N F A + ++N++ W+ DTGAT H+T D S L + YQGN+ +SV
Sbjct: 306 RCNLKFAPTVTRPPKALLAQTPSSNSHDWVLDTGATSHLTHDGSYLHSPSTYQGNDSVSV 365
Query: 72 ANGKTLPIKHIGSSLLP 22
ANG T+PI+H G LLP
Sbjct: 366 ANGSTVPIQHTGQGLLP 382
Score = 47.4 bits (111), Expect(2) = 5e-17
Identities = 31/100 (31%), Positives = 48/100 (48%)
Frame = -2
Query: 551 HSLLLSEEITILKRNKVLLTLEITPHALNTVVNSGNKDGVKPSFSNYNPNYEGKVRNYNP 372
+SLL SE I I + + LT +AL + ++D + F N N + YN
Sbjct: 215 YSLLCSEAINIQQEQSLDLTNNTPHNALYASSQNSSRDRTQRRFFK-NKN---SAQPYNS 270
Query: 371 NYTRFAPNKTKPPPTGSSNQRERPICQICSKVGHVAIDCY 252
N N + +SN +P CQIC K+GH+A++C+
Sbjct: 271 N------NNSSQMAQPASNPSAKPTCQICGKIGHIALNCW 304