BLASTX nr result
ID: Ophiopogon24_contig00030988
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00030988
(552 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020276297.1| RNA polymerase II transcription factor B sub... 80 6e-16
ref|XP_020276296.1| RNA polymerase II transcription factor B sub... 80 2e-15
ref|XP_010916569.2| PREDICTED: RNA polymerase II transcription f... 72 3e-11
ref|XP_008802071.1| PREDICTED: RNA polymerase II transcription f... 69 3e-10
ref|XP_008802070.1| PREDICTED: RNA polymerase II transcription f... 69 3e-10
ref|XP_008802068.1| PREDICTED: RNA polymerase II transcription f... 69 3e-10
ref|XP_020578485.1| RNA polymerase II transcription factor B sub... 67 1e-09
ref|XP_020578476.1| RNA polymerase II transcription factor B sub... 67 1e-09
ref|XP_020678108.1| RNA polymerase II transcription factor B sub... 66 1e-09
ref|XP_020678107.1| RNA polymerase II transcription factor B sub... 66 1e-09
gb|PKA49129.1| hypothetical protein AXF42_Ash010814 [Apostasia s... 65 2e-09
gb|OVA02025.1| TFIIH subunit Tfb4/p34 [Macleaya cordata] 61 6e-08
gb|PIA65596.1| hypothetical protein AQUCO_00100827v1 [Aquilegia ... 60 6e-08
ref|XP_022768207.1| RNA polymerase II transcription factor B sub... 61 9e-08
ref|XP_022768206.1| RNA polymerase II transcription factor B sub... 61 1e-07
ref|XP_022768205.1| RNA polymerase II transcription factor B sub... 61 1e-07
ref|XP_022768204.1| RNA polymerase II transcription factor B sub... 61 1e-07
ref|XP_022768203.1| RNA polymerase II transcription factor B sub... 61 1e-07
ref|XP_022768201.1| RNA polymerase II transcription factor B sub... 61 1e-07
gb|PIA46649.1| hypothetical protein AQUCO_01500296v1 [Aquilegia ... 60 2e-07
>ref|XP_020276297.1| RNA polymerase II transcription factor B subunit 4-like isoform X2
[Asparagus officinalis]
gb|ONK65471.1| uncharacterized protein A4U43_C07F37450 [Asparagus officinalis]
Length = 146
Score = 80.5 bits (197), Expect = 6e-16
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFWG +ISFAKFLNHVIPF +V+
Sbjct: 1 MAPAPSKLYSDDVSLVVVLLDINPFFWGSTNSISFAKFLNHVIPFLNSLLLINQVNQVVL 60
Query: 510 IATGVNSCGYIYDS 551
IATGVNSCGYIYDS
Sbjct: 61 IATGVNSCGYIYDS 74
>ref|XP_020276296.1| RNA polymerase II transcription factor B subunit 4-like isoform X1
[Asparagus officinalis]
Length = 191
Score = 80.5 bits (197), Expect = 2e-15
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFWG +ISFAKFLNHVIPF +V+
Sbjct: 1 MAPAPSKLYSDDVSLVVVLLDINPFFWGSTNSISFAKFLNHVIPFLNSLLLINQVNQVVL 60
Query: 510 IATGVNSCGYIYDS 551
IATGVNSCGYIYDS
Sbjct: 61 IATGVNSCGYIYDS 74
>ref|XP_010916569.2| PREDICTED: RNA polymerase II transcription factor B subunit 4
[Elaeis guineensis]
Length = 486
Score = 71.6 bits (174), Expect = 3e-11
Identities = 40/83 (48%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGG---------AATISFAKFLNHVIPFXXXXXX 482
M APSK NPFFW G AAT+ FAKFLNHVIPF
Sbjct: 1 MNSAPSKLYTDDVSLVVVLLDANPFFWAGGGGTSPHHPAATLPFAKFLNHVIPFLNSVLL 60
Query: 483 XXXXXXIVVIATGVNSCGYIYDS 551
+V+IATGVNSCGYIYDS
Sbjct: 61 LNQLNQVVLIATGVNSCGYIYDS 83
>ref|XP_008802071.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
isoform X3 [Phoenix dactylifera]
ref|XP_008802073.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
isoform X3 [Phoenix dactylifera]
Length = 459
Score = 68.6 bits (166), Expect = 3e-10
Identities = 41/86 (47%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-----GG-------AATISFAKFLNHVIPFXXX 473
M APSK NPFFW GG AAT+ FAKFLNHVIPF
Sbjct: 1 MNSAPSKLYSDDVSLVVVLLDTNPFFWAAGAGGGNTSPHHPAATLPFAKFLNHVIPFLNS 60
Query: 474 XXXXXXXXXIVVIATGVNSCGYIYDS 551
+V+IATGVNSCGYIYDS
Sbjct: 61 VLLLNQLNQVVLIATGVNSCGYIYDS 86
>ref|XP_008802070.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
isoform X2 [Phoenix dactylifera]
Length = 470
Score = 68.6 bits (166), Expect = 3e-10
Identities = 41/86 (47%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-----GG-------AATISFAKFLNHVIPFXXX 473
M APSK NPFFW GG AAT+ FAKFLNHVIPF
Sbjct: 1 MNSAPSKLYSDDVSLVVVLLDTNPFFWAAGAGGGNTSPHHPAATLPFAKFLNHVIPFLNS 60
Query: 474 XXXXXXXXXIVVIATGVNSCGYIYDS 551
+V+IATGVNSCGYIYDS
Sbjct: 61 VLLLNQLNQVVLIATGVNSCGYIYDS 86
>ref|XP_008802068.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
isoform X1 [Phoenix dactylifera]
ref|XP_008802069.1| PREDICTED: RNA polymerase II transcription factor B subunit 4
isoform X1 [Phoenix dactylifera]
Length = 475
Score = 68.6 bits (166), Expect = 3e-10
Identities = 41/86 (47%), Positives = 44/86 (51%), Gaps = 12/86 (13%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-----GG-------AATISFAKFLNHVIPFXXX 473
M APSK NPFFW GG AAT+ FAKFLNHVIPF
Sbjct: 1 MNSAPSKLYSDDVSLVVVLLDTNPFFWAAGAGGGNTSPHHPAATLPFAKFLNHVIPFLNS 60
Query: 474 XXXXXXXXXIVVIATGVNSCGYIYDS 551
+V+IATGVNSCGYIYDS
Sbjct: 61 VLLLNQLNQVVLIATGVNSCGYIYDS 86
>ref|XP_020578485.1| RNA polymerase II transcription factor B subunit 4 isoform X2
[Phalaenopsis equestris]
Length = 296
Score = 66.6 bits (161), Expect = 1e-09
Identities = 38/84 (45%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-------GG---AATISFAKFLNHVIPFXXXXX 479
M APSK NPFFW GG AA ++FAKFL+HVIPF
Sbjct: 1 MASAPSKLYSDDVSLVAVLLDVNPFFWAASAGAGGGNHTAAALTFAKFLDHVIPFLNSLL 60
Query: 480 XXXXXXXIVVIATGVNSCGYIYDS 551
+V+IATG+NSCGYIYDS
Sbjct: 61 LMNQLNQVVLIATGINSCGYIYDS 84
>ref|XP_020578476.1| RNA polymerase II transcription factor B subunit 4 isoform X1
[Phalaenopsis equestris]
Length = 301
Score = 66.6 bits (161), Expect = 1e-09
Identities = 38/84 (45%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-------GG---AATISFAKFLNHVIPFXXXXX 479
M APSK NPFFW GG AA ++FAKFL+HVIPF
Sbjct: 1 MASAPSKLYSDDVSLVAVLLDVNPFFWAASAGAGGGNHTAAALTFAKFLDHVIPFLNSLL 60
Query: 480 XXXXXXXIVVIATGVNSCGYIYDS 551
+V+IATG+NSCGYIYDS
Sbjct: 61 LMNQLNQVVLIATGINSCGYIYDS 84
>ref|XP_020678108.1| RNA polymerase II transcription factor B subunit 4 isoform X2
[Dendrobium catenatum]
Length = 297
Score = 66.2 bits (160), Expect = 1e-09
Identities = 37/82 (45%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-----GG---AATISFAKFLNHVIPFXXXXXXX 485
M APSK NPFFW GG AAT+ F+KFL+HVIPF
Sbjct: 1 MASAPSKLYSDDVSLVVVLLDANPFFWAAGAGGGNHPAATLPFSKFLDHVIPFLNSLLLM 60
Query: 486 XXXXXIVVIATGVNSCGYIYDS 551
+V+IATG+N+CGYIYDS
Sbjct: 61 NQLNQVVLIATGINTCGYIYDS 82
>ref|XP_020678107.1| RNA polymerase II transcription factor B subunit 4 isoform X1
[Dendrobium catenatum]
gb|PKU85560.1| hypothetical protein MA16_Dca003300 [Dendrobium catenatum]
Length = 302
Score = 66.2 bits (160), Expect = 1e-09
Identities = 37/82 (45%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-----GG---AATISFAKFLNHVIPFXXXXXXX 485
M APSK NPFFW GG AAT+ F+KFL+HVIPF
Sbjct: 1 MASAPSKLYSDDVSLVVVLLDANPFFWAAGAGGGNHPAATLPFSKFLDHVIPFLNSLLLM 60
Query: 486 XXXXXIVVIATGVNSCGYIYDS 551
+V+IATG+N+CGYIYDS
Sbjct: 61 NQLNQVVLIATGINTCGYIYDS 82
>gb|PKA49129.1| hypothetical protein AXF42_Ash010814 [Apostasia shenzhenica]
Length = 281
Score = 65.5 bits (158), Expect = 2e-09
Identities = 38/82 (46%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFW-----GG---AATISFAKFLNHVIPFXXXXXXX 485
M APSK NPFFW GG AAT+ F+KFL HVIPF
Sbjct: 1 MSSAPSKLYADDVSLVVVLLDVNPFFWAAGASGGNHPAATLPFSKFLKHVIPFLNSLLLL 60
Query: 486 XXXXXIVVIATGVNSCGYIYDS 551
+V+IATG NSCGYIYDS
Sbjct: 61 NQLNRVVLIATGTNSCGYIYDS 82
>gb|OVA02025.1| TFIIH subunit Tfb4/p34 [Macleaya cordata]
Length = 250
Score = 61.2 bits (147), Expect = 6e-08
Identities = 34/78 (43%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAAT----ISFAKFLNHVIPFXXXXXXXXXXX 497
M APSK NPFFWGG T +SF+ FL HVI F
Sbjct: 1 MASAPSKQYSDDVSLLMVLLDTNPFFWGGTNTTTGVLSFSSFLTHVISFLNSIILLNQLN 60
Query: 498 XIVVIATGVNSCGYIYDS 551
+VVIATG NSC YIY+S
Sbjct: 61 QVVVIATGFNSCDYIYES 78
>gb|PIA65596.1| hypothetical protein AQUCO_00100827v1 [Aquilegia coerulea]
Length = 175
Score = 60.1 bits (144), Expect = 6e-08
Identities = 33/80 (41%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAAT------ISFAKFLNHVIPFXXXXXXXXX 491
M PSK NPFFWGG T +SF+ F+ HV+ F
Sbjct: 1 MASVPSKLYSDDVSLLVVLIDTNPFFWGGVNTTNASSSLSFSTFIAHVLSFINSILLLNQ 60
Query: 492 XXXIVVIATGVNSCGYIYDS 551
+VVIATGVNSC YIYDS
Sbjct: 61 LNQVVVIATGVNSCNYIYDS 80
>ref|XP_022768207.1| RNA polymerase II transcription factor B subunit 4-like isoform X6
[Durio zibethinus]
Length = 268
Score = 60.8 bits (146), Expect = 9e-08
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFW ++++SF++FL+HV+ F +VV
Sbjct: 1 MAPAPSKLYADDVSLVVVLLDTNPFFWS-SSSLSFSQFLSHVLAFFNAILTLNQLNQVVV 59
Query: 510 IATGVNSCGYIYDS 551
IATG NSC YI+DS
Sbjct: 60 IATGYNSCDYIFDS 73
>ref|XP_022768206.1| RNA polymerase II transcription factor B subunit 4-like isoform X5
[Durio zibethinus]
Length = 291
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFW ++++SF++FL+HV+ F +VV
Sbjct: 1 MAPAPSKLYADDVSLVVVLLDTNPFFWS-SSSLSFSQFLSHVLAFFNAILTLNQLNQVVV 59
Query: 510 IATGVNSCGYIYDS 551
IATG NSC YI+DS
Sbjct: 60 IATGYNSCDYIFDS 73
>ref|XP_022768205.1| RNA polymerase II transcription factor B subunit 4-like isoform X4
[Durio zibethinus]
Length = 291
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFW ++++SF++FL+HV+ F +VV
Sbjct: 1 MAPAPSKLYADDVSLVVVLLDTNPFFWS-SSSLSFSQFLSHVLAFFNAILTLNQLNQVVV 59
Query: 510 IATGVNSCGYIYDS 551
IATG NSC YI+DS
Sbjct: 60 IATGYNSCDYIFDS 73
>ref|XP_022768204.1| RNA polymerase II transcription factor B subunit 4-like isoform X3
[Durio zibethinus]
Length = 296
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFW ++++SF++FL+HV+ F +VV
Sbjct: 1 MAPAPSKLYADDVSLVVVLLDTNPFFWS-SSSLSFSQFLSHVLAFFNAILTLNQLNQVVV 59
Query: 510 IATGVNSCGYIYDS 551
IATG NSC YI+DS
Sbjct: 60 IATGYNSCDYIFDS 73
>ref|XP_022768203.1| RNA polymerase II transcription factor B subunit 4-like isoform X2
[Durio zibethinus]
Length = 318
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFW ++++SF++FL+HV+ F +VV
Sbjct: 1 MAPAPSKLYADDVSLVVVLLDTNPFFWS-SSSLSFSQFLSHVLAFFNAILTLNQLNQVVV 59
Query: 510 IATGVNSCGYIYDS 551
IATG NSC YI+DS
Sbjct: 60 IATGYNSCDYIFDS 73
>ref|XP_022768201.1| RNA polymerase II transcription factor B subunit 4-like isoform X1
[Durio zibethinus]
ref|XP_022768202.1| RNA polymerase II transcription factor B subunit 4-like isoform X1
[Durio zibethinus]
Length = 323
Score = 60.8 bits (146), Expect = 1e-07
Identities = 31/74 (41%), Positives = 41/74 (55%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAATISFAKFLNHVIPFXXXXXXXXXXXXIVV 509
M PAPSK NPFFW ++++SF++FL+HV+ F +VV
Sbjct: 1 MAPAPSKLYADDVSLVVVLLDTNPFFWS-SSSLSFSQFLSHVLAFFNAILTLNQLNQVVV 59
Query: 510 IATGVNSCGYIYDS 551
IATG NSC YI+DS
Sbjct: 60 IATGYNSCDYIFDS 73
>gb|PIA46649.1| hypothetical protein AQUCO_01500296v1 [Aquilegia coerulea]
Length = 303
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/80 (41%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +3
Query: 330 MIPAPSKXXXXXXXXXXXXXXXNPFFWGGAAT------ISFAKFLNHVIPFXXXXXXXXX 491
M PSK NPFFWGG T +SF+ F+ HV+ F
Sbjct: 1 MASVPSKLYSDDVSLLVVLIDTNPFFWGGVNTTNASSSLSFSTFIAHVLSFINSILLLNQ 60
Query: 492 XXXIVVIATGVNSCGYIYDS 551
+VVIATGVNSC YIYDS
Sbjct: 61 LSQVVVIATGVNSCNYIYDS 80