BLASTX nr result
ID: Ophiopogon24_contig00030375
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00030375
(908 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse tr... 72 3e-10
gb|ONM38170.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 72 4e-10
gb|AQL03708.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 71 6e-10
gb|ONL92524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 71 6e-10
gb|AQK92253.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 8e-10
gb|AQK92256.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 1e-09
gb|AQK92235.1| Retrovirus-related Pol polyprotein LINE-1 [Zea ma... 70 1e-09
gb|AQK92238.1| Retrovirus-related Pol polyprotein LINE-1 [Zea ma... 70 1e-09
gb|AQK92237.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 1e-09
gb|AQK92248.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 1e-09
gb|AQK86945.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 1e-09
gb|AQK46390.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 1e-09
gb|ONM29620.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 2e-09
gb|ONM52836.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 2e-09
gb|AQK65817.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 2e-09
gb|ONM32720.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 2e-09
gb|AQK43188.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 2e-09
gb|ONM06616.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 70 2e-09
gb|ONM55524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays] 69 2e-09
gb|PKA52309.1| integrator complex subunit 11 [Apostasia shenzhen... 69 2e-09
>emb|CBL94163.1| putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus
domestica]
Length = 622
Score = 71.6 bits (174), Expect(2) = 3e-10
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 21/169 (12%)
Frame = -1
Query: 524 LALLMRSKDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*R 345
+A + KDMY+G + +RT EG+ PI +GLH GSSLS Y F M +LT HI
Sbjct: 332 VAYIQAIKDMYEGAKTAVRTYEGQTESFPITVGLHQGSSLSPYLFALVMDELTGHIQDDI 391
Query: 344 Q--TLFARGIVK*QDPRK--NNIESIMVDISEFKGL-I*PDRHEYNSCE----------- 213
LFA IV + ++ N ++ ++ E KGL + + EY C+
Sbjct: 392 PWCMLFAYDIVLIDETQEGVNAKLNLWREVLESKGLCLSRSKTEYMECKFSANGSQNELG 451
Query: 212 ----RQ*IPSSKQ*PFLPTYDQYCYDGEIEKDV-HRIEAGW*RWRNVFG 81
Q IP S + +L + Q +GE+++D+ HRI+AGW +W++ G
Sbjct: 452 VRIGDQEIPKSDRFRYLGSILQ--KNGELDEDLNHRIQAGWMKWKSASG 498
Score = 22.3 bits (46), Expect(2) = 3e-10
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = -2
Query: 82 DRRVPTKLKGIF 47
DRR+P KLKG F
Sbjct: 502 DRRMPLKLKGKF 513
>gb|ONM38170.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1038
Score = 71.6 bits (174), Expect = 4e-10
Identities = 59/176 (33%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y FT + ++T I G LFA
Sbjct: 726 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFTLVIDEVTRDIQGDIPWCMLFA 785
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCE-----RQ*IPSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 786 DDVVLIEESRSGVSQKLELWRKTLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVV 845
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G YK
Sbjct: 846 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYK 901
>gb|AQL03708.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 71.2 bits (173), Expect = 6e-10
Identities = 58/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F M ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVMDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMRYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 879
>gb|ONL92524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 71.2 bits (173), Expect = 6e-10
Identities = 59/176 (33%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCE-----RQ*IPSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSATGYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I+KDV HRI+AGW +WR G HKI+G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDKDVSHRIKAGWLKWRQAAGVLCDPRVPHKIKGKFYR 879
>gb|AQK92253.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 387
Score = 70.1 bits (170), Expect = 8e-10
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 75 KDMYSNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 134
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 135 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 194
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 195 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 250
>gb|AQK92256.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 476
Score = 70.1 bits (170), Expect = 1e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 164 KDMYSNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 223
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 224 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 283
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 284 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 339
>gb|AQK92235.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92242.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92249.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92250.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92262.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 576
Score = 70.1 bits (170), Expect = 1e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 264 KDMYSNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 323
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 324 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 383
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 384 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 439
>gb|AQK92238.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92243.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92246.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92251.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92259.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92260.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
gb|AQK92261.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 591
Score = 70.1 bits (170), Expect = 1e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 279 KDMYSNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 338
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 339 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 398
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 399 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 454
>gb|AQK92237.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 712
Score = 70.1 bits (170), Expect = 1e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 400 KDMYSNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 459
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 460 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 519
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 520 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 575
>gb|AQK92248.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 844
Score = 70.1 bits (170), Expect = 1e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 532 KDMYSNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 591
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 592 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 651
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 652 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 707
>gb|AQK86945.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 70.1 bits (170), Expect = 1e-09
Identities = 57/176 (32%), Positives = 86/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSDVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 879
>gb|AQK46390.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 557
Score = 69.7 bits (169), Expect = 1e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 245 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 304
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 305 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 364
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 365 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 420
>gb|ONM29620.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 934
Score = 69.7 bits (169), Expect = 2e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 622 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 681
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 682 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 741
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 742 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 797
>gb|ONM52836.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 69.7 bits (169), Expect = 2e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 879
>gb|AQK65817.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 69.7 bits (169), Expect = 2e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 879
>gb|ONM32720.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 69.7 bits (169), Expect = 2e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 879
>gb|AQK43188.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 69.7 bits (169), Expect = 2e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 879
>gb|ONM06616.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1016
Score = 69.7 bits (169), Expect = 2e-09
Identities = 57/176 (32%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 704 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSPYLFALVIDEVTRDIQGDIPWCMLFA 763
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 764 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 823
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
P D + Y DG+I++DV HRI+AGW +WR G HK++G Y+
Sbjct: 824 PKKDTFRYLGSMLQKDGDIDEDVSHRIKAGWLKWRQAAGVLCDPRVPHKLKGKFYR 879
>gb|ONM55524.1| Retrovirus-related Pol polyprotein LINE-1 [Zea mays]
Length = 1038
Score = 69.3 bits (168), Expect = 2e-09
Identities = 56/176 (31%), Positives = 85/176 (48%), Gaps = 22/176 (12%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY V+++RT +G PINIGLH GS+LS Y F + ++T I G LFA
Sbjct: 726 KDMYTNVVTSVRTSDGDTDDFPINIGLHQGSALSTYLFALVIDEVTRDIQGVLPWCMLFA 785
Query: 329 RGIVK*QDPRKNNIESIMV--DISEFKGL-I*PDRHEYNSCERQ*I-----PSSKQ*PFL 174
+V ++ R + + + E KG + + EY C+ + S +
Sbjct: 786 DDVVLIEESRSGVSQKLELWRQTLEAKGFRLSRSKTEYMKCDFSAMGYEDGDVSLDGQVV 845
Query: 173 PTYDQYCY-------DGEIEKDV-HRIEAGW*RWRNVFGS*STH----KIEGDIYK 42
P D + Y +G+I++DV HRI+AGW +WR G H K++G Y+
Sbjct: 846 PKKDTFRYLGSMLQKEGDIDEDVSHRIKAGWLKWRQAAGVLCDHRVPRKLKGKFYR 901
>gb|PKA52309.1| integrator complex subunit 11 [Apostasia shenzhenica]
Length = 513
Score = 68.9 bits (167), Expect = 2e-09
Identities = 66/180 (36%), Positives = 89/180 (49%), Gaps = 26/180 (14%)
Frame = -1
Query: 503 KDMYDGTVSNIRTIEGR*SHSPINIGLHHGSSLSLYFFTFFMYDLTMHILG*RQ--TLFA 330
KDMY+G V+++RT G PI +GLH GSSLS Y F M +T HI LFA
Sbjct: 199 KDMYEGAVTSVRTQGGLTKDFPITVGLHQGSSLSPYLFALIMEVMTGHIQDEVPWCMLFA 258
Query: 329 RGIV---K*QDPRKNNIESIMVDISEFKGL-I*PDRHEYNSC----ER-----------Q 207
IV K ++ K +E + + E KGL + + EY C ER Q
Sbjct: 259 DDIVLIEKTKEGAKAKLE-LWRNALESKGLHLSRSKTEYMECTFSQERNTYIGDVTIGDQ 317
Query: 206 *IPSSKQ*PFLPTYDQYCYDGEIEKDV-HRIEAGW*RWRNVFG----S*STHKIEGDIYK 42
+ S++ +L + Q DGEI+ DV RI+AGW +WRN G + KI+G YK
Sbjct: 318 IVKKSERFRYLGSIIQ--NDGEIDNDVISRIQAGWVKWRNASGVLCDRKISSKIKGKFYK 375