BLASTX nr result
ID: Ophiopogon24_contig00029768
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00029768
(513 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP67484.1| Retrovirus-related Pol polyprotein from transposo... 82 2e-28
gb|PNX69499.1| retrovirus-related Pol polyprotein from transposo... 89 2e-27
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 76 1e-24
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 78 2e-24
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen... 77 3e-24
gb|PRQ26617.1| putative RNA-directed DNA polymerase [Rosa chinen... 77 3e-24
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 75 4e-24
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 75 1e-23
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 77 2e-23
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 77 2e-23
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa] 76 3e-23
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 70 4e-23
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024... 74 6e-23
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 72 6e-23
gb|PNX96445.1| copia LTR rider [Trifolium pratense] 73 6e-23
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 74 6e-23
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 71 7e-23
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 72 7e-23
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 70 1e-22
gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-... 74 1e-22
>gb|KYP67484.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 561
Score = 81.6 bits (200), Expect(2) = 2e-28
Identities = 32/65 (49%), Positives = 51/65 (78%)
Frame = -1
Query: 348 MSSQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKN 169
M +++Q YH+RTKH+DV HF+ +++EEG + + K+ T +NPADMLTKVV +KF HC +
Sbjct: 495 MLAKNQTYHARTKHIDVRYHFIREIIEEGGVAIQKIRTTENPADMLTKVVDSIKFQHCLD 554
Query: 168 LLHVL 154
L++++
Sbjct: 555 LINII 559
Score = 72.0 bits (175), Expect(2) = 2e-28
Identities = 36/62 (58%), Positives = 42/62 (67%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
WR TLQSTVALSTTEAEYMA+TEA+KEAIW ++V CDS S I LAK
Sbjct: 440 WRSTLQSTVALSTTEAEYMALTEAVKEAIWLQGLLGELGILQKHVKVHCDSQSAIMLAKN 499
Query: 332 RS 327
++
Sbjct: 500 QT 501
>gb|PNX69499.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 227
Score = 89.0 bits (219), Expect(2) = 2e-27
Identities = 40/63 (63%), Positives = 52/63 (82%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
+++QV+H+RTKH+DV HFV DV+EEGNI + KVHT +N ADMLTKVV G KF HC NLL
Sbjct: 159 AKNQVHHARTKHIDVRYHFVRDVVEEGNISLTKVHTDENSADMLTKVVSGSKFQHCLNLL 218
Query: 162 HVL 154
+++
Sbjct: 219 NII 221
Score = 61.2 bits (147), Expect(2) = 2e-27
Identities = 30/61 (49%), Positives = 39/61 (63%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
WR LQSTVALSTTEAEYMA+ E +KEA+W + +++ CDS S + LAK
Sbjct: 102 WRSMLQSTVALSTTEAEYMAVAEGVKEALWLRGLLDDLGMKQECVKLSCDSQSALHLAKN 161
Query: 332 R 330
+
Sbjct: 162 Q 162
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 75.9 bits (185), Expect(2) = 1e-24
Identities = 34/65 (52%), Positives = 47/65 (72%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
+++Q +H R+KH+DV HFV D++ G I V KVHTKDNP+DMLTK + KF HC NL+
Sbjct: 1144 AKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKFKHCLNLI 1203
Query: 162 HVLTC 148
++ C
Sbjct: 1204 NMGDC 1208
Score = 65.1 bits (157), Expect(2) = 1e-24
Identities = 34/62 (54%), Positives = 39/62 (62%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
W+ LQS VALSTTEAEYMAMTEA+KEAIW + V CD+ S I LAK
Sbjct: 1087 WKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITEELAMYRGKVVVYCDNQSAIHLAKN 1146
Query: 332 RS 327
+S
Sbjct: 1147 QS 1148
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 77.8 bits (190), Expect(2) = 2e-24
Identities = 33/63 (52%), Positives = 49/63 (77%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
+++Q YH+RTKH+DV H+V +++E G++ + K+ TKDNP+DMLTKVV VKF HC L+
Sbjct: 232 AKNQTYHARTKHIDVKYHYVREIIEGGDVLLKKIDTKDNPSDMLTKVVSEVKFQHCLKLI 291
Query: 162 HVL 154
+L
Sbjct: 292 QIL 294
Score = 62.4 bits (150), Expect(2) = 2e-24
Identities = 32/62 (51%), Positives = 40/62 (64%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
WR LQST+ALSTTEAEY+A TEA+KEAIW + + V CD+ S I LAK
Sbjct: 175 WRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSAIFLAKN 234
Query: 332 RS 327
++
Sbjct: 235 QT 236
>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 502
Score = 77.4 bits (189), Expect(2) = 3e-24
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
+++QV+H+RTKH+DV H + D +E GNI V KVHT DN AD LTK V KF HC NLL
Sbjct: 438 AKNQVFHARTKHIDVRYHRIRDWVESGNIIVEKVHTNDNAADCLTKPVAVEKFKHCLNLL 497
Query: 162 HVLTC 148
V TC
Sbjct: 498 SVTTC 502
Score = 62.0 bits (149), Expect(2) = 3e-24
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
W+ TLQ+ ALSTTEAEYMA+TEA KEAIW + + V+CDS S I LAK
Sbjct: 381 WKSTLQAVTALSTTEAEYMALTEASKEAIWLNGLASEFGIHQEGVVVKCDSQSAIHLAKN 440
Query: 332 R 330
+
Sbjct: 441 Q 441
>gb|PRQ26617.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 164
Score = 77.4 bits (189), Expect(2) = 3e-24
Identities = 38/65 (58%), Positives = 46/65 (70%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
+++QV+H+RTKH+DV H + D +E GNI V KVHT DN AD LTK V KF HC NLL
Sbjct: 100 AKNQVFHARTKHIDVRYHRIRDWVESGNIIVEKVHTNDNAADCLTKPVAVEKFKHCLNLL 159
Query: 162 HVLTC 148
V TC
Sbjct: 160 SVTTC 164
Score = 62.0 bits (149), Expect(2) = 3e-24
Identities = 32/61 (52%), Positives = 39/61 (63%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
W+ TLQ+ ALSTTEAEYMA+TEA KEAIW + + V+CDS S I LAK
Sbjct: 43 WKSTLQAVTALSTTEAEYMALTEASKEAIWLNGLASEFGIHQEGVVVKCDSQSAIHLAKN 102
Query: 332 R 330
+
Sbjct: 103 Q 103
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 74.7 bits (182), Expect(2) = 4e-24
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+DV HF+ V+ EG++ V K+ T DNPADM+TK VP KF+ C +L+
Sbjct: 1118 TKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLV 1177
Query: 162 HV 157
V
Sbjct: 1178 GV 1179
Score = 64.3 bits (155), Expect(2) = 4e-24
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ +LQ+TVALSTTEAEYMA++EA KEAIW + + CDS S ICL K
Sbjct: 1061 WKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTK 1119
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 75.1 bits (183), Expect(2) = 1e-23
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+DV HF+ V+ EG++ V K+ T DNPADM+TK VP KF+ C +L+
Sbjct: 1075 TKDQMFHERTKHIDVRYHFIRSVITEGDVKVCKISTHDNPADMMTKPVPATKFELCSSLV 1134
Query: 162 HV 157
V
Sbjct: 1135 GV 1136
Score = 62.4 bits (150), Expect(2) = 1e-23
Identities = 30/59 (50%), Positives = 36/59 (61%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ LQ+TVALSTTEAEYMA++EA KE IW + + CDS S ICL K
Sbjct: 1018 WKANLQATVALSTTEAEYMAISEACKETIWLRGLYTELCGVTSCINIFCDSQSAICLTK 1076
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 77.0 bits (188), Expect(2) = 2e-23
Identities = 32/63 (50%), Positives = 48/63 (76%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+D+ HFV DV+EEG + V K+ T DNPADM+TK +P KF+ C +L+
Sbjct: 1270 TKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329
Query: 162 HVL 154
++
Sbjct: 1330 GLI 1332
Score = 59.7 bits (143), Expect(2) = 2e-23
Identities = 31/59 (52%), Positives = 34/59 (57%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
WR TLQS VALSTTEAEYMA+ EA KE IW + + CDS S I L K
Sbjct: 1213 WRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1271
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 77.0 bits (188), Expect(2) = 2e-23
Identities = 32/63 (50%), Positives = 48/63 (76%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+D+ HFV DV+EEG + V K+ T DNPADM+TK +P KF+ C +L+
Sbjct: 1270 TKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKISTHDNPADMMTKPIPVAKFELCSSLV 1329
Query: 162 HVL 154
++
Sbjct: 1330 GLI 1332
Score = 59.7 bits (143), Expect(2) = 2e-23
Identities = 31/59 (52%), Positives = 34/59 (57%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
WR TLQS VALSTTEAEYMA+ EA KE IW + + CDS S I L K
Sbjct: 1213 WRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1271
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
Length = 1335
Score = 76.3 bits (186), Expect(2) = 3e-23
Identities = 32/63 (50%), Positives = 48/63 (76%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+D+ HFV DV+EEG + V K+ T DNPADM+TK +P KF+ C +L+
Sbjct: 1272 TKDQMFHERTKHIDIKYHFVRDVIEEGKLKVCKICTHDNPADMMTKPIPVAKFELCSSLV 1331
Query: 162 HVL 154
++
Sbjct: 1332 GLI 1334
Score = 59.7 bits (143), Expect(2) = 3e-23
Identities = 31/59 (52%), Positives = 34/59 (57%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
WR TLQS VALSTTEAEYMA+ EA KE IW + + CDS S I L K
Sbjct: 1215 WRATLQSVVALSTTEAEYMAICEACKELIWLKGLYAELSGVESCISLHCDSQSAIYLTK 1273
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 70.1 bits (170), Expect(2) = 4e-23
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQV+H RTKH+DV HF+ E I V KV T DNPADM TK VP KF HC +LL
Sbjct: 1246 AKDQVHHERTKHIDVRYHFL---RSEKRIKVKKVGTADNPADMFTKPVPQSKFQHCLDLL 1302
Query: 162 HVLTC 148
++ +C
Sbjct: 1303 NIRSC 1307
Score = 65.5 bits (158), Expect(2) = 4e-23
Identities = 34/59 (57%), Positives = 37/59 (62%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ TLQ TV LSTTEAEYMA+TEA KE IW D V CDS+S ICLAK
Sbjct: 1189 WKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSAICLAK 1247
>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
Length = 1892
Score = 74.3 bits (181), Expect(2) = 6e-23
Identities = 36/61 (59%), Positives = 45/61 (73%)
Frame = -1
Query: 339 QDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLLH 160
++Q +H RTKH+DV HF+ DV+E+G I V KV T DN ADMLTK+VP KF HCK+L
Sbjct: 1832 KNQRFHERTKHIDVRFHFIRDVVEKGAIKVEKVITDDNAADMLTKIVPLAKFAHCKDLAG 1891
Query: 159 V 157
V
Sbjct: 1892 V 1892
Score = 60.8 bits (146), Expect(2) = 6e-23
Identities = 32/61 (52%), Positives = 37/61 (60%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
W+ TLQS VALSTTEAEYMA TEA+KEAIW ++CDS S I L K
Sbjct: 1774 WKSTLQSIVALSTTEAEYMAATEAVKEAIWLKGLVAELSSAQLKSILKCDSQSAIHLIKN 1833
Query: 332 R 330
+
Sbjct: 1834 Q 1834
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 71.6 bits (174), Expect(2) = 6e-23
Identities = 31/62 (50%), Positives = 47/62 (75%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
+++Q++H RTKH+DV HFV + + +G+I + KV T+ NPADMLTKV+P KF HC +L+
Sbjct: 1778 TKNQMFHERTKHIDVRYHFVREHVTQGDIVISKVATEKNPADMLTKVIPAYKFKHCLDLI 1837
Query: 162 HV 157
+
Sbjct: 1838 GI 1839
Score = 63.5 bits (153), Expect(2) = 6e-23
Identities = 33/61 (54%), Positives = 38/61 (62%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
W+ LQSTVALSTTEAEYMA+ EA+KEA+W DF V CDS S I L K
Sbjct: 1721 WKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIHLTKN 1780
Query: 332 R 330
+
Sbjct: 1781 Q 1781
>gb|PNX96445.1| copia LTR rider [Trifolium pratense]
Length = 1318
Score = 73.2 bits (178), Expect(2) = 6e-23
Identities = 32/60 (53%), Positives = 42/60 (70%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
S++ YH RTKH+DV HFV V+E G + V+KV T+DN ADM+TK +P KF HC L+
Sbjct: 1253 SKNSAYHERTKHIDVRLHFVRGVIERGEVQVLKVSTEDNAADMITKTLPSCKFFHCMQLI 1312
Score = 62.0 bits (149), Expect(2) = 6e-23
Identities = 30/59 (50%), Positives = 38/59 (64%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ TLQ VALSTTEAEY+A+TEA+KEA+W + V+CDS S I L+K
Sbjct: 1196 WKATLQKVVALSTTEAEYIALTEAVKEALWLEGFAKELKLQGRGITVKCDSQSAIHLSK 1254
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 73.9 bits (180), Expect(2) = 6e-23
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+DV HF+ V+ EG++ V K+ T DNPADM+TK VP KF+ C +L+
Sbjct: 1148 TKDQMFHERTKHIDVRYHFIRGVIAEGDVKVCKISTHDNPADMMTKPVPTTKFELCSSLV 1207
Query: 162 HV 157
V
Sbjct: 1208 GV 1209
Score = 61.2 bits (147), Expect(2) = 6e-23
Identities = 29/59 (49%), Positives = 36/59 (61%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ +LQ+TVALSTTE EYMA++EA KEAIW + + CDS S IC K
Sbjct: 1091 WKASLQATVALSTTEVEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICFTK 1149
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 71.2 bits (173), Expect(2) = 7e-23
Identities = 31/60 (51%), Positives = 46/60 (76%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
+++Q++H RTKH+DV HFV + + +G+I + KV T+ NPADMLTKV+P KF HC +L+
Sbjct: 1757 TKNQMFHERTKHIDVRYHFVREHVTQGDIVISKVATEKNPADMLTKVIPAYKFKHCLDLI 1816
Score = 63.5 bits (153), Expect(2) = 7e-23
Identities = 33/61 (54%), Positives = 38/61 (62%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAKT 333
W+ LQSTVALSTTEAEYMA+ EA+KEA+W DF V CDS S I L K
Sbjct: 1700 WKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIHLTKN 1759
Query: 332 R 330
+
Sbjct: 1760 Q 1760
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 72.0 bits (175), Expect(2) = 7e-23
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+D+ HF+ V+ EG++ V K+ T DNP DM+TK VP KF+ C +L+
Sbjct: 1178 TKDQMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLV 1237
Query: 162 HV 157
V
Sbjct: 1238 GV 1239
Score = 62.8 bits (151), Expect(2) = 7e-23
Identities = 30/59 (50%), Positives = 37/59 (62%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ +LQ+TVALSTTEAEYMA++EA KE IW + + CDS S ICL K
Sbjct: 1121 WKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTK 1179
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 70.1 bits (170), Expect(2) = 1e-22
Identities = 28/60 (46%), Positives = 44/60 (73%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+DV HF+ ++ EG++ + K+ DNPADM+TK VP KF+ C +L+
Sbjct: 1476 TKDQMFHERTKHIDVRYHFIRGLIAEGDVKICKISIHDNPADMMTKPVPATKFELCSSLV 1535
Score = 64.3 bits (155), Expect(2) = 1e-22
Identities = 31/59 (52%), Positives = 38/59 (64%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ +LQ+TVALSTTEAEYMA++EA KEAIW + + CDS S ICL K
Sbjct: 1419 WKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTVLCAVTSCINIFCDSQSAICLTK 1477
>gb|AAX96781.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA92543.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 1170
Score = 74.3 bits (181), Expect(2) = 1e-22
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = -1
Query: 342 SQDQVYHSRTKHVDVC*HFVWDVLEEGNIDVVKVHTKDNPADMLTKVVPGVKFDHCKNLL 163
++DQ++H RTKH+D+ HF+ V+ EG + V K+ T DNPADM+TK+VP KF+ C +L+
Sbjct: 1107 TKDQMFHERTKHIDLRYHFIRGVITEGEVKVCKISTHDNPADMMTKLVPATKFELCSSLV 1166
Query: 162 HV 157
V
Sbjct: 1167 AV 1168
Score = 59.7 bits (143), Expect(2) = 1e-22
Identities = 29/59 (49%), Positives = 37/59 (62%)
Frame = -2
Query: 512 WRCTLQSTVALSTTEAEYMAMTEAIKEAIWXXXXXXXXXXXXDFMEVRCDSMSVICLAK 336
W+ +LQ+ VALSTTEAEYMA++EA KEAIW + + C+S S ICL K
Sbjct: 1050 WKTSLQAIVALSTTEAEYMAISEACKEAIWLRGLYTELCGVMSCINIFCNSQSAICLTK 1108