BLASTX nr result
ID: Ophiopogon24_contig00028408
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00028408
(586 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA30522.1| ORF 143 (chloroplast) [Glycine max] >gi|73440260... 157 2e-56
gb|AFK49064.1| unknown [Lotus japonicus] 161 1e-47
gb|PLY90520.1| hypothetical protein LSAT_2X20640 [Lactuca sativa] 160 2e-47
gb|OAY85602.1| 30S ribosomal protein S12, chloroplastic [Ananas ... 152 3e-43
ref|YP_009145083.1| ribosomal protein S12 (chloroplast) [Podococ... 147 3e-42
ref|XP_017225397.1| PREDICTED: CASP-like protein 1D1 [Daucus car... 112 2e-27
ref|NP_862801.1| hypothetical protein CafeCp090 [Calycanthus flo... 106 1e-26
ref|YP_358631.1| hypothetical protein PhapfoPp085 [Phalaenopsis ... 90 7e-23
ref|YP_009184034.1| ribosomal protein S12 (chloroplast) [Dendrob... 94 2e-21
gb|EEF42577.1| conserved hypothetical protein [Ricinus communis] 97 1e-20
gb|KQJ97119.1| hypothetical protein BRADI_3g28913v3 [Brachypodiu... 86 1e-18
ref|YP_001109550.1| hypothetical protein Poptr_cp072 [Populus tr... 60 3e-18
gb|AFS35523.1| ribosomal protein S12, partial (plastid) [Fragari... 80 8e-17
ref|YP_009002279.1| ribosomal protein S12 (chloroplast) [Pinguic... 76 6e-14
ref|YP_001152253.1| ORF40x [Pinus koraiensis] >gi|145048878|gb|A... 72 1e-13
gb|KVI00687.1| hypothetical protein Ccrd_021064 [Cynara carduncu... 72 3e-13
gb|KRH54918.1| hypothetical protein GLYMA_06G218700 [Glycine max] 67 3e-11
ref|YP_001312254.1| hypothetical protein CYtaCp089 [Cycas taitun... 44 4e-11
gb|KVI11330.1| Ribosomal protein S12/S23 [Cynara cardunculus var... 52 1e-10
ref|YP_007474607.1| hypothetical_protein (chloroplast) [Cycas re... 40 9e-10
>emb|CAA30522.1| ORF 143 (chloroplast) [Glycine max]
gb|KHN32086.1| Putative 8.8 kDa protein in rps12-tRNA-Val intergenic region
[Glycine soja]
Length = 143
Score = 157 bits (397), Expect(3) = 2e-56
Identities = 76/84 (90%), Positives = 79/84 (94%)
Frame = -3
Query: 254 TLHYFGNLRTRSYGYVKYRISNPSSKRRETDTQFKVSKQNSILDLIDTYRILWKAVFDES 75
TLHYFGN RT+SYGYVKYRISNPS KR TDTQF+VSKQNSILD+IDTYRILWKAVFDES
Sbjct: 59 TLHYFGNPRTQSYGYVKYRISNPSRKRGGTDTQFQVSKQNSILDIIDTYRILWKAVFDES 118
Query: 74 RMYGLEGDLSYLSRSTLQYGVKKP 3
RMYGLEGDLSYLSRSTLQYG KKP
Sbjct: 119 RMYGLEGDLSYLSRSTLQYGAKKP 142
Score = 88.6 bits (218), Expect(3) = 2e-56
Identities = 46/56 (82%), Positives = 47/56 (83%)
Frame = -2
Query: 420 F*KRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 253
F K+FDSEL YVQG I K FQRFSLTLSVSTNNSK LDFFR GPSQIAMIRST Y
Sbjct: 7 FLKKFDSELRYVQGPIWKEFQRFSLTLSVSTNNSKCLDFFRIGPSQIAMIRSTLHY 62
Score = 22.3 bits (46), Expect(3) = 2e-56
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -1
Query: 439 MRQKIFFLKE 410
MRQKIFFLK+
Sbjct: 1 MRQKIFFLKK 10
>gb|AFK49064.1| unknown [Lotus japonicus]
Length = 128
Score = 161 bits (407), Expect = 1e-47
Identities = 88/127 (69%), Positives = 94/127 (74%), Gaps = 12/127 (9%)
Frame = -3
Query: 347 LLCPCQQTIRNTSTFSEQVRVK*Q*FEALLF------------TLHYFGNLRTRSYGYVK 204
++CP R + F + VRV Q LF TLHYF NLRT+SYGYVK
Sbjct: 1 MICPRSNIERISEVFLDFVRVNKQFEMPRLFRLGPSQIAMIRSTLHYFENLRTQSYGYVK 60
Query: 203 YRISNPSSKRRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSYLSRSTL 24
YRISNPS KRRETDTQF+VSKQNSILDLIDTYRIL KAVFDESRMYGLEGDLSYLSRSTL
Sbjct: 61 YRISNPSKKRRETDTQFQVSKQNSILDLIDTYRILRKAVFDESRMYGLEGDLSYLSRSTL 120
Query: 23 QYGVKKP 3
QYG KKP
Sbjct: 121 QYGAKKP 127
>gb|PLY90520.1| hypothetical protein LSAT_2X20640 [Lactuca sativa]
Length = 124
Score = 160 bits (406), Expect = 2e-47
Identities = 80/85 (94%), Positives = 81/85 (95%)
Frame = -3
Query: 257 FTLHYFGNLRTRSYGYVKYRISNPSSKRRETDTQFKVSKQNSILDLIDTYRILWKAVFDE 78
F LHYFGN RT+SYGYVKYRISNPS KRRETDTQFKVSKQNSILDLIDTYRIL KAVFDE
Sbjct: 39 FFLHYFGNPRTQSYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILRKAVFDE 98
Query: 77 SRMYGLEGDLSYLSRSTLQYGVKKP 3
SRMYGLEGDLSYLSRSTLQYGVKKP
Sbjct: 99 SRMYGLEGDLSYLSRSTLQYGVKKP 123
>gb|OAY85602.1| 30S ribosomal protein S12, chloroplastic [Ananas comosus]
Length = 182
Score = 152 bits (383), Expect = 3e-43
Identities = 76/78 (97%), Positives = 76/78 (97%)
Frame = -2
Query: 420 F*KRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYITLF 241
F KRFDSELLYVQG ILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYITLF
Sbjct: 105 FLKRFDSELLYVQGPILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYITLF 164
Query: 240 RKPKDSIVWICKIQDFQS 187
RKPKDSIVWICKIQDFQS
Sbjct: 165 RKPKDSIVWICKIQDFQS 182
>ref|YP_009145083.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
ref|YP_009145127.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
gb|AKJ85882.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
gb|AKJ85883.1| ribosomal protein S12 (chloroplast) [Podococcus barteri]
Length = 121
Score = 147 bits (371), Expect = 3e-42
Identities = 72/73 (98%), Positives = 72/73 (98%)
Frame = -3
Query: 221 SYGYVKYRISNPSSKRRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSY 42
SYGYVKYRISNPS KRRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSY
Sbjct: 48 SYGYVKYRISNPSRKRRETDTQFKVSKQNSILDLIDTYRILWKAVFDESRMYGLEGDLSY 107
Query: 41 LSRSTLQYGVKKP 3
LSRSTLQYGVKKP
Sbjct: 108 LSRSTLQYGVKKP 120
>ref|XP_017225397.1| PREDICTED: CASP-like protein 1D1 [Daucus carota subsp. sativus]
Length = 232
Score = 112 bits (281), Expect = 2e-27
Identities = 55/61 (90%), Positives = 56/61 (91%)
Frame = +3
Query: 66 VHTTFIEYGFPQNSICIYEIEYGILFTHFKLSIRFPPFTARIGNPVFYISIRSSP*VSEI 245
VHTTFIEYGF QNSICIYEIEYGILFTHFKLSIRFPPF ARI NPVFYISIR SP VS+I
Sbjct: 172 VHTTFIEYGFVQNSICIYEIEYGILFTHFKLSIRFPPFPARIENPVFYISIRFSPCVSQI 231
Query: 246 V 248
V
Sbjct: 232 V 232
>ref|NP_862801.1| hypothetical protein CafeCp090 [Calycanthus floridus var. glaucus]
ref|NP_862814.1| hypothetical protein CafeCp092 [Calycanthus floridus var. glaucus]
sp|Q7Y618.1|YCX1_CALFG RecName: Full=Uncharacterized 8.8 kDa protein in rps12-tRNA-Val
intergenic region (chloroplast) [Calycanthus floridus
var. glaucus]
emb|CAD28768.1| hypothetical protein (chloroplast) [Calycanthus floridus var.
glaucus]
emb|CAD28782.1| hypothetical protein (chloroplast) [Calycanthus floridus var.
glaucus]
Length = 75
Score = 106 bits (264), Expect = 1e-26
Identities = 54/56 (96%), Positives = 54/56 (96%)
Frame = -2
Query: 420 F*KRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 253
F KRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIA IRSTSFY
Sbjct: 7 FLKRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIATIRSTSFY 62
>ref|YP_358631.1| hypothetical protein PhapfoPp085 [Phalaenopsis aphrodite subsp.
formosana]
gb|AAW82567.1| hypothetical protein (chloroplast) [Phalaenopsis aphrodite subsp.
formosana]
Length = 77
Score = 90.1 bits (222), Expect(2) = 7e-23
Identities = 48/58 (82%), Positives = 50/58 (86%)
Frame = +2
Query: 251 M*KEVLRIIAI*LGPVLKKSRYFELFVDTDKVRENL*NDFNIEPWTYNSSESNLF*KE 424
M KEVLRIIAI LGPVLKKSRYFELFVDTDK RENL N NI PWTY+SSESNLF K+
Sbjct: 1 MEKEVLRIIAIGLGPVLKKSRYFELFVDTDKGRENLLNYSNIGPWTYSSSESNLFRKK 58
Score = 45.1 bits (105), Expect(2) = 7e-23
Identities = 21/23 (91%), Positives = 21/23 (91%)
Frame = +3
Query: 414 FRKKIFCLMVACSSPLTKLSLLG 482
FRKK FCLMVACSSPL KLSLLG
Sbjct: 55 FRKKSFCLMVACSSPLPKLSLLG 77
>ref|YP_009184034.1| ribosomal protein S12 (chloroplast) [Dendrobium chrysotoxum]
gb|ALN98160.1| ribosomal protein S12 (chloroplast) [Dendrobium chrysotoxum]
Length = 101
Score = 94.0 bits (232), Expect = 2e-21
Identities = 47/51 (92%), Positives = 47/51 (92%)
Frame = -2
Query: 357 RFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYITLFRKPKDSIVWICK 205
RFSL LSVSTNNSKYLDFFRTGPS IAMIRSTSF ITLFRKPKDSIVWI K
Sbjct: 38 RFSLPLSVSTNNSKYLDFFRTGPSPIAMIRSTSFSITLFRKPKDSIVWISK 88
>gb|EEF42577.1| conserved hypothetical protein [Ricinus communis]
Length = 286
Score = 96.7 bits (239), Expect = 1e-20
Identities = 48/55 (87%), Positives = 49/55 (89%)
Frame = +3
Query: 84 EYGFPQNSICIYEIEYGILFTHFKLSIRFPPFTARIGNPVFYISIRSSP*VSEIV 248
EYGF QNSICIYEIEYGILFTHFKLSI PPF ARIGNPVFYISIR SP VS+IV
Sbjct: 232 EYGFLQNSICIYEIEYGILFTHFKLSICSPPFPARIGNPVFYISIRLSPRVSKIV 286
>gb|KQJ97119.1| hypothetical protein BRADI_3g28913v3 [Brachypodium distachyon]
Length = 84
Score = 85.9 bits (211), Expect = 1e-18
Identities = 50/66 (75%), Positives = 51/66 (77%)
Frame = -2
Query: 420 F*KRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFYITLF 241
F KRFDSELLY RFSLTLSVSTNNSKYLDFFRTGPS +AMIRSTSF ITL
Sbjct: 7 FLKRFDSELLY----------RFSLTLSVSTNNSKYLDFFRTGPS-LAMIRSTSFSITLI 55
Query: 240 RKPKDS 223
RK KDS
Sbjct: 56 RKSKDS 61
>ref|YP_001109550.1| hypothetical protein Poptr_cp072 [Populus trichocarpa]
ref|YP_001109569.1| hypothetical protein Poptr_cp092 [Populus trichocarpa]
gb|ABO36754.1| conserved hypothetical protein (chloroplast) [Populus trichocarpa]
gb|ABO36773.1| conserved hypothetical protein (chloroplast) [Populus trichocarpa]
Length = 65
Score = 60.1 bits (144), Expect(2) = 3e-18
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = -2
Query: 348 LTLSVSTNNSKYLDFFRTGPSQIAMIRSTSFY 253
+TLSVSTNNSK LDFFR GPSQIAMIRSTSFY
Sbjct: 1 MTLSVSTNNSKCLDFFRAGPSQIAMIRSTSFY 32
Score = 59.7 bits (143), Expect(2) = 3e-18
Identities = 30/34 (88%), Positives = 31/34 (91%)
Frame = -1
Query: 250 YTISET*GLDRMDM*NTGFPILAVKGGKRILNLK 149
YTISET GL+RMDM NTGFPILA KGGKRILNLK
Sbjct: 32 YTISETQGLNRMDMENTGFPILAGKGGKRILNLK 65
>gb|AFS35523.1| ribosomal protein S12, partial (plastid) [Fragaria moschata]
Length = 40
Score = 80.1 bits (196), Expect = 8e-17
Identities = 38/39 (97%), Positives = 38/39 (97%)
Frame = -3
Query: 119 IDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKP 3
IDTY ILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKP
Sbjct: 1 IDTYIILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKP 39
>ref|YP_009002279.1| ribosomal protein S12 (chloroplast) [Pinguicula ehlersiae]
emb|CDL78835.1| ribosomal protein S12 (chloroplast) [Pinguicula ehlersiae]
Length = 156
Score = 75.9 bits (185), Expect = 6e-14
Identities = 37/40 (92%), Positives = 38/40 (95%)
Frame = -3
Query: 122 LIDTYRILWKAVFDESRMYGLEGDLSYLSRSTLQYGVKKP 3
+IDTYRIL KAVFDESRMYGL GDLSYLSRSTLQYGVKKP
Sbjct: 116 IIDTYRILRKAVFDESRMYGLGGDLSYLSRSTLQYGVKKP 155
>ref|YP_001152253.1| ORF40x [Pinus koraiensis]
gb|ABP35493.1| ORF40x (chloroplast) [Pinus koraiensis]
Length = 40
Score = 72.0 bits (175), Expect = 1e-13
Identities = 31/38 (81%), Positives = 32/38 (84%)
Frame = -1
Query: 115 IHIEFCGKPYSMKVVCTAWREIFHIFRDPPYNMGSKSQ 2
+ IE CGKPYS KVVCT WREIFH FRDPPYNM SKSQ
Sbjct: 1 MQIESCGKPYSTKVVCTVWREIFHTFRDPPYNMESKSQ 38
>gb|KVI00687.1| hypothetical protein Ccrd_021064 [Cynara cardunculus var. scolymus]
Length = 96
Score = 72.4 bits (176), Expect = 3e-13
Identities = 38/53 (71%), Positives = 41/53 (77%)
Frame = +3
Query: 138 LFTHFKLSIRFPPFTARIGNPVFYISIRSSP*VSEIV*CKKKCFESLLFDSDL 296
+FTHFKLSI FPPF ARIGNPVFYISIR S CK+K F+SLLFDSDL
Sbjct: 1 MFTHFKLSICFPPFAARIGNPVFYISIRLSH------WCKRKFFKSLLFDSDL 47
>gb|KRH54918.1| hypothetical protein GLYMA_06G218700 [Glycine max]
Length = 87
Score = 67.0 bits (162), Expect = 3e-11
Identities = 35/45 (77%), Positives = 36/45 (80%)
Frame = -2
Query: 420 F*KRFDSELLYVQGSILKSFQRFSLTLSVSTNNSKYLDFFRTGPS 286
F K+FDSEL YVQG I K FQRFS TLSVSTNNSK LDFFR G S
Sbjct: 7 FLKKFDSELRYVQGPIWKEFQRFSWTLSVSTNNSKCLDFFRIGLS 51
>ref|YP_001312254.1| hypothetical protein CYtaCp089 [Cycas taitungensis]
ref|YP_001312284.1| hypothetical protein CYtaCp120 [Cycas taitungensis]
dbj|BAF64995.1| hypothetical protein (chloroplast) [Cycas taitungensis]
dbj|BAF65026.1| hypothetical protein (chloroplast) [Cycas taitungensis]
Length = 64
Score = 43.9 bits (102), Expect(3) = 4e-11
Identities = 18/21 (85%), Positives = 20/21 (95%)
Frame = +1
Query: 256 KRSASNHCYLTRTCSEKVEVF 318
K+S SNHCYLTRTCS+KVEVF
Sbjct: 44 KKSVSNHCYLTRTCSKKVEVF 64
Score = 37.7 bits (86), Expect(3) = 4e-11
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = +2
Query: 167 FPSFYC*DWKSCILHIHTIESLGFRNSVM*KEV 265
F F C DWKS ILHI TI+SLG + SV K V
Sbjct: 15 FLPFSCYDWKSRILHICTIKSLGSQKSVKKKSV 47
Score = 33.5 bits (75), Expect(3) = 4e-11
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 129 YGILFTHFKLSIRFPPFT 182
Y ILFTHFKLSIRF PF+
Sbjct: 2 YIILFTHFKLSIRFLPFS 19
>gb|KVI11330.1| Ribosomal protein S12/S23 [Cynara cardunculus var. scolymus]
Length = 157
Score = 52.4 bits (124), Expect(2) = 1e-10
Identities = 30/53 (56%), Positives = 33/53 (62%)
Frame = -1
Query: 430 KIFFLKEIRFGTIICPRFNIEIISEVFPYFVRVNKQFEIPRLFQNRSESNSND 272
K F KEI+F TIICPRFNIE SEVFP FV N+SESN+ND
Sbjct: 90 KDFLSKEIQFRTIICPRFNIEKNSEVFPDFV------------HNKSESNNND 130
Score = 41.6 bits (96), Expect(2) = 1e-10
Identities = 18/20 (90%), Positives = 18/20 (90%)
Frame = -2
Query: 246 LFRKPKDSIVWICKIQDFQS 187
LFRKPKD IVWIC IQDFQS
Sbjct: 138 LFRKPKDPIVWICIIQDFQS 157
>ref|YP_007474607.1| hypothetical_protein (chloroplast) [Cycas revoluta]
ref|YP_009308177.1| hypothetical protein (chloroplast) [Cycas panzhihuaensis]
gb|AEX99157.1| hypothetical_protein (chloroplast) [Cycas revoluta]
gb|AOS53126.1| hypothetical protein (chloroplast) [Cycas panzhihuaensis]
Length = 60
Score = 40.4 bits (93), Expect(3) = 9e-10
Identities = 17/21 (80%), Positives = 18/21 (85%)
Frame = +1
Query: 256 KRSASNHCYLTRTCSEKVEVF 318
K SNHCYLTRTCS+KVEVF
Sbjct: 40 KSVVSNHCYLTRTCSKKVEVF 60
Score = 36.6 bits (83), Expect(3) = 9e-10
Identities = 18/29 (62%), Positives = 21/29 (72%)
Frame = +2
Query: 167 FPSFYC*DWKSCILHIHTIESLGFRNSVM 253
F F C DWKS ILHI TI+SLG + SV+
Sbjct: 15 FLPFSCYDWKSRILHICTIKSLGSQKSVV 43
Score = 33.5 bits (75), Expect(3) = 9e-10
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 129 YGILFTHFKLSIRFPPFT 182
Y ILFTHFKLSIRF PF+
Sbjct: 2 YIILFTHFKLSIRFLPFS 19