BLASTX nr result
ID: Ophiopogon24_contig00027356
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00027356
(515 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen... 276 2e-88
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 289 8e-88
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera] 244 5e-75
ref|WP_105280125.1| hypothetical protein [Escherichia coli] >gi|... 234 5e-74
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 249 2e-73
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 249 2e-73
ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024... 244 1e-71
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 243 1e-71
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 236 1e-71
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 242 4e-71
ref|XP_015638684.1| PREDICTED: uncharacterized protein LOC107281... 235 6e-71
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 241 2e-70
emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group] 231 4e-70
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 239 8e-70
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 239 8e-70
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 239 8e-70
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa] 238 1e-69
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 236 5e-69
dbj|GAU47849.1| hypothetical protein TSUD_404260 [Trifolium subt... 234 5e-69
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 234 1e-68
>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 502
Score = 276 bits (707), Expect = 2e-88
Identities = 130/162 (80%), Positives = 148/162 (91%)
Frame = +2
Query: 29 MSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVAKGFSQKEG 208
M+EEMESL KNSVWELVPKPK+RK++G KWV+RKKE +++ A YKARLVAKG+SQKEG
Sbjct: 1 MTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGVHDADAIKYKARLVAKGYSQKEG 60
Query: 209 IDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQPEGFAEAG 388
+DYDEIFSPVVKHTSIR+LLS+ AQ+DME+EQ+DVKTAFLHGDLEE IYMSQPEGF E G
Sbjct: 61 VDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQPEGFVETG 120
Query: 389 KEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYDC 514
KEDLVCRLRKSLYGLKQSPRQWYKRFD++ML+IGY R YDC
Sbjct: 121 KEDLVCRLRKSLYGLKQSPRQWYKRFDTYMLKIGYTRCLYDC 162
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 289 bits (740), Expect = 8e-88
Identities = 134/170 (78%), Positives = 156/170 (91%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
E GW+GAM+EEMESL KNSVWELVPKPK+RK++G KWV+RKKE ++E+ A TYKARLVA
Sbjct: 793 ESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDAITYKARLVA 852
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KG+SQKEG+DYDEIFSPVVKHTSIR+LLS+ AQ+DME+EQ+DVKTAFLHGDLEE IYMSQ
Sbjct: 853 KGYSQKEGVDYDEIFSPVVKHTSIRLLLSIAAQYDMEIEQMDVKTAFLHGDLEEDIYMSQ 912
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYDC 514
PEGF E GKE+LVCRL+KSLYGLKQSPRQWYK FD++ML+IGY R +YDC
Sbjct: 913 PEGFVETGKENLVCRLKKSLYGLKQSPRQWYKPFDTYMLKIGYTRCQYDC 962
>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
Length = 595
Score = 244 bits (623), Expect = 5e-75
Identities = 110/170 (64%), Positives = 141/170 (82%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
E+ WMGAM EE++ L KN W+LV P+ ++ IG KWVY+KKE++++ +KARLVA
Sbjct: 172 EKSRWMGAMVEEIQFLHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKEGEKFKARLVA 231
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KG+SQ++G+DYDEIFSP+V+HTSIR +L LVA DM+LEQ+DV+T FLHGDLEE +YM Q
Sbjct: 232 KGYSQRKGVDYDEIFSPMVRHTSIRTVLGLVAHFDMQLEQMDVETTFLHGDLEELVYMVQ 291
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYDC 514
PEGF + G+E LVC+LRKSLYGLKQSPRQWYK FDS++++IGYKR EYDC
Sbjct: 292 PEGFIQPGQEHLVCKLRKSLYGLKQSPRQWYKCFDSYIIRIGYKRCEYDC 341
>ref|WP_105280125.1| hypothetical protein [Escherichia coli]
gb|PPY92707.1| hypothetical protein C5P31_25810 [Escherichia coli]
Length = 324
Score = 234 bits (596), Expect = 5e-74
Identities = 112/169 (66%), Positives = 135/169 (79%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
E W AM+EEM+SL +N W+L PK +K IG KWV+ KKE YKARLVA
Sbjct: 121 EEDKWRIAMNEEMQSLYQNHTWKLANLPKGKKAIGCKWVFAKKEGFPNQVDVRYKARLVA 180
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KG++QKEGIDY+E+FSPVVKH+SIR++L+LVAQ D+EL Q+DVKTAFLHG+LEE IYM+Q
Sbjct: 181 KGYAQKEGIDYNEVFSPVVKHSSIRIMLALVAQLDLELVQMDVKTAFLHGNLEEEIYMTQ 240
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF AGKE++VC+L KSLYGLKQS RQWYKRFD FML+ GYKR +YD
Sbjct: 241 PEGFKVAGKENMVCKLEKSLYGLKQSSRQWYKRFDEFMLRQGYKRSKYD 289
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 249 bits (635), Expect = 2e-73
Identities = 121/170 (71%), Positives = 141/170 (82%)
Frame = +2
Query: 2 DERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLV 181
DE W AMSEE+ESL KN WELV P ++KI+G KWV++KKE + A +KARLV
Sbjct: 1311 DESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLV 1370
Query: 182 AKGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMS 361
AKGF+QKEGIDY+E+FSPVVKH+SIRVLL++VA+ D+ELEQLDVKTAFLHG+LEETIYM
Sbjct: 1371 AKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMR 1430
Query: 362 QPEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
QPEGF GKED VC L+KSLYGLKQSPRQWYKRFDSFM+Q GY R +YD
Sbjct: 1431 QPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYD 1480
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 249 bits (635), Expect = 2e-73
Identities = 121/170 (71%), Positives = 141/170 (82%)
Frame = +2
Query: 2 DERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLV 181
DE W AMSEE+ESL KN WELV P ++KI+G KWV++KKE + A +KARLV
Sbjct: 1332 DESAQWAIAMSEEIESLHKNHTWELVKPPSNQKIVGCKWVFKKKEGILGVEATRFKARLV 1391
Query: 182 AKGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMS 361
AKGF+QKEGIDY+E+FSPVVKH+SIRVLL++VA+ D+ELEQLDVKTAFLHG+LEETIYM
Sbjct: 1392 AKGFTQKEGIDYNEVFSPVVKHSSIRVLLAMVAKSDLELEQLDVKTAFLHGELEETIYMR 1451
Query: 362 QPEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
QPEGF GKED VC L+KSLYGLKQSPRQWYKRFDSFM+Q GY R +YD
Sbjct: 1452 QPEGFTVPGKEDHVCLLKKSLYGLKQSPRQWYKRFDSFMIQHGYTRCDYD 1501
>ref|XP_015080794.1| PREDICTED: uncharacterized protein LOC107024343 [Solanum pennellii]
Length = 1892
Score = 244 bits (623), Expect = 1e-71
Identities = 118/165 (71%), Positives = 135/165 (81%)
Frame = +2
Query: 17 WMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVAKGFS 196
W AM EEMESL +N W LV +PK + +G KWVY+KKE + E A +KARLVAKGFS
Sbjct: 1393 WQLAMMEEMESLHRNETWVLVKRPKGMRTVGCKWVYKKKEGIPEVEAARFKARLVAKGFS 1452
Query: 197 QKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQPEGF 376
QKEGIDY+EIFSPVVKH+SIRVLL+LVAQ D+EL+QLDVKTAFLHGDLEETIYM QPEGF
Sbjct: 1453 QKEGIDYNEIFSPVVKHSSIRVLLALVAQFDLELQQLDVKTAFLHGDLEETIYMDQPEGF 1512
Query: 377 AEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
GKED VC+L+KSLYGLKQSPRQWYKRFD+FM G+ R +D
Sbjct: 1513 LAEGKEDHVCQLKKSLYGLKQSPRQWYKRFDAFMTTHGFSRSAFD 1557
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 1032
Score = 243 bits (619), Expect = 1e-71
Identities = 116/169 (68%), Positives = 135/169 (79%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
E W AMSEEMESL +N W+L PK +K IG KWVY KK+ ++ YKARLVA
Sbjct: 590 EEDKWRSAMSEEMESLRRNQTWKLANLPKGKKAIGCKWVYAKKDGFSDKSEVRYKARLVA 649
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KG++QKEGIDY+E+FSPVVKH+SIRVLL+LVAQ DMEL Q+DVKTAFLHGDLEE IYM+Q
Sbjct: 650 KGYAQKEGIDYNEVFSPVVKHSSIRVLLALVAQLDMELVQMDVKTAFLHGDLEEEIYMTQ 709
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF AGKE++ C+L KSLYGLKQSPRQWYKRFD FML+ Y R +YD
Sbjct: 710 PEGFKVAGKENMFCKLEKSLYGLKQSPRQWYKRFDKFMLRQKYTRSKYD 758
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 236 bits (602), Expect = 1e-71
Identities = 111/170 (65%), Positives = 136/170 (80%)
Frame = +2
Query: 2 DERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLV 181
D+ W+ AM +EMESL KN WELV PK++K I KW++++KE ++ + YKARLV
Sbjct: 212 DDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKECISPSDEAMYKARLV 271
Query: 182 AKGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMS 361
AKG+SQ GID++++FSPVVKH+SIR LLS+VA HD ELEQ+DVKTAFLHG+LEE IYM
Sbjct: 272 AKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYME 331
Query: 362 QPEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
QPEGF GKE+LVCRL+KSLYGLKQSPRQWYKRFDSFML ++R YD
Sbjct: 332 QPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYD 381
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 242 bits (618), Expect = 4e-71
Identities = 110/169 (65%), Positives = 137/169 (81%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+R+ W+ AM EEM+SL KN WELV PK +K + KW++++KE ++ + P +KARLVA
Sbjct: 817 DREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKARLVA 876
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KGFSQ G+DY+++FSPVVKH+SIR S+VA HD+ELEQLDVKTAFLHG+LEE IYM Q
Sbjct: 877 KGFSQIVGVDYNDVFSPVVKHSSIRTFFSIVAMHDLELEQLDVKTAFLHGELEEEIYMDQ 936
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF GKED VC+L++SLYGLKQSPRQWYKRFDSFML G+KR E+D
Sbjct: 937 PEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFD 985
>ref|XP_015638684.1| PREDICTED: uncharacterized protein LOC107281003 [Oryza sativa
Japonica Group]
Length = 651
Score = 235 bits (599), Expect = 6e-71
Identities = 111/170 (65%), Positives = 135/170 (79%)
Frame = +2
Query: 2 DERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLV 181
D+ W+ AM +EMESL KN WEL PK++K I KW++++KE M+ + YKARLV
Sbjct: 387 DDCNRWITAMHDEMESLEKNHSWELEKLPKEKKPIRCKWIFKRKEGMSPSDEARYKARLV 446
Query: 182 AKGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMS 361
AKG+SQ GID++++FSPVVKH+SIR LLS+VA HD ELEQ+DVKTAFLHG+LEE IYM
Sbjct: 447 AKGYSQIPGIDFNDVFSPVVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYME 506
Query: 362 QPEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
QPEGF GKE+LVCRL+KSLYGLKQSPRQWYKRFDSFML ++R YD
Sbjct: 507 QPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYD 556
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 241 bits (614), Expect = 2e-70
Identities = 110/170 (64%), Positives = 140/170 (82%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+ + W AM +EMESL KN W+LV +P RKII KWV++KKE ++ YKAR+VA
Sbjct: 802 DSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVA 861
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
+GF+Q+EG+DY+EIFSPVV+HTSIRVLL++VA ++ELEQLDVKTAFLHG+LEE IYM+Q
Sbjct: 862 RGFNQREGVDYNEIFSPVVRHTSIRVLLAIVAHQNLELEQLDVKTAFLHGELEEEIYMTQ 921
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYDC 514
P+GF GKE+ VC+L+KSLYGLKQSPRQWYKRFDS+M+++GY R YDC
Sbjct: 922 PDGFQVPGKENHVCKLKKSLYGLKQSPRQWYKRFDSYMVKLGYTRSSYDC 971
>emb|CAE03834.3| OSJNBb0013J13.11 [Oryza sativa Japonica Group]
Length = 576
Score = 231 bits (589), Expect = 4e-70
Identities = 104/169 (61%), Positives = 134/169 (79%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+R+ W+ AM EEM+SL KN W+LV PK +K + KW++++KE ++ + P +KARLVA
Sbjct: 150 DRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIFKRKEGLSPSEPPRFKARLVA 209
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KGFSQ G+DY+++FSPVVKH+SIR S+VA D+EL+QLDVKT FLHG+LE+ IYM Q
Sbjct: 210 KGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVAMDDLELKQLDVKTTFLHGELEDEIYMDQ 269
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF GKED VC+L++SLYGLKQSPRQWYKRFDSFML G+K E+D
Sbjct: 270 PEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKWSEFD 318
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 239 bits (609), Expect = 8e-70
Identities = 108/169 (63%), Positives = 136/169 (80%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+ + W+ AM EEM+SL KNS WE+VP PK +K I KW++++KE ++ + P YKARLVA
Sbjct: 828 DSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
+G+SQ G+DY+++FSPVVKH+SIR LS+VA HD+ELEQLDVKTAFLHG+LEE IYM Q
Sbjct: 888 RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 947
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF GKE VC+L++SLYGLKQSPRQW KRFDSFML +KR +YD
Sbjct: 948 PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 239 bits (609), Expect = 8e-70
Identities = 108/169 (63%), Positives = 136/169 (80%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+ + W+ AM EEM+SL KNS WE+VP PK +K I KW++++KE ++ + P YKARLVA
Sbjct: 828 DSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
+G+SQ G+DY+++FSPVVKH+SIR LS+VA HD+ELEQLDVKTAFLHG+LEE IYM Q
Sbjct: 888 RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 947
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF GKE VC+L++SLYGLKQSPRQW KRFDSFML +KR +YD
Sbjct: 948 PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1373
Score = 239 bits (609), Expect = 8e-70
Identities = 108/169 (63%), Positives = 136/169 (80%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+ + W+ AM EEM+SL KNS WE+VP PK +K I KW++++KE ++ + P YKARLVA
Sbjct: 828 DSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEGLSSSEPPKYKARLVA 887
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
+G+SQ G+DY+++FSPVVKH+SIR LS+VA HD+ELEQLDVKTAFLHG+LEE IYM Q
Sbjct: 888 RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 947
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF GKE VC+L++SLYGLKQSPRQW KRFDSFML +KR +YD
Sbjct: 948 PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 996
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
Length = 1335
Score = 238 bits (607), Expect = 1e-69
Identities = 108/169 (63%), Positives = 137/169 (81%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+ + W+ AM EEM+SL KNS WE+VP PK +K I KW++++KE+++ + P YKARLVA
Sbjct: 830 DSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCKWIFKRKEALSLSEPPKYKARLVA 889
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
+G+SQ G+DY+++FSPVVKH+SIR LS+VA HD+ELEQLDVKTAFLHG+LEE IYM Q
Sbjct: 890 RGYSQIPGVDYNDVFSPVVKHSSIRTFLSIVASHDLELEQLDVKTAFLHGELEEDIYMDQ 949
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF GKE VC+L++SLYGLKQSPRQW KRFDSFML +KR +YD
Sbjct: 950 PEGFIVPGKEKYVCKLKRSLYGLKQSPRQWNKRFDSFMLSHSFKRSKYD 998
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gb|AAU89150.1| integrase core domain containing protein [Oryza sativa Japonica
Group]
gb|ABF98081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1322
Score = 236 bits (603), Expect = 5e-69
Identities = 106/169 (62%), Positives = 134/169 (79%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
+R+ W+ A+ EEM+SL KN WELV PK +K + KW++++KE ++ + P +K RLVA
Sbjct: 817 DREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEPPRFKVRLVA 876
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KGFSQ G+DY+++FSPVVKH+SIR S+V HD+ELEQLDVKT FLHG+LEE IYM Q
Sbjct: 877 KGFSQIAGVDYNDVFSPVVKHSSIRTFFSIVTMHDLELEQLDVKTTFLHGELEEEIYMDQ 936
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
PEGF GKED VC+L++SLYGLKQSPRQWYKRFDSFML G+KR E+D
Sbjct: 937 PEGFIVPGKEDYVCKLKRSLYGLKQSPRQWYKRFDSFMLSHGFKRSEFD 985
>dbj|GAU47849.1| hypothetical protein TSUD_404260 [Trifolium subterraneum]
Length = 887
Score = 234 bits (596), Expect = 5e-69
Identities = 109/167 (65%), Positives = 136/167 (81%)
Frame = +2
Query: 5 ERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVA 184
E++ WMGAM EEMESL KN WELV PK +++IG KWVY++K ++ E +KARLVA
Sbjct: 482 EKERWMGAMMEEMESLQKNQTWELVQLPKGKRVIGCKWVYKRKPAVTEKEGEKFKARLVA 541
Query: 185 KGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQ 364
KG+SQ++ IDYDEIF PVV+HTSIR +L+LVA DM LEQ+DVKT FLH +L+E IYM Q
Sbjct: 542 KGYSQQKRIDYDEIFFPVVRHTSIRAVLALVASRDMHLEQMDVKTTFLHDNLDEQIYMEQ 601
Query: 365 PEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGE 505
EGF++ GK LVC+L++SLYGLK+SPRQWYKRF+S+MLQIGYKR E
Sbjct: 602 AEGFSDTGKGRLVCKLKRSLYGLKRSPRQWYKRFNSYMLQIGYKRIE 648
Score = 164 bits (414), Expect = 1e-43
Identities = 86/162 (53%), Positives = 106/162 (65%), Gaps = 1/162 (0%)
Frame = +2
Query: 29 MSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLVAKGFSQKEG 208
M+EEM+SL KN+ WELV P +KI+G +WVY K + + +KARLVAKG++Q G
Sbjct: 1 MNEEMKSLKKNNTWELVDCPPGKKIVGCRWVYTVKYKV-DGTIERFKARLVAKGYTQTYG 59
Query: 209 IDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMSQPEGF-AEA 385
+DY EIF+PV K +IRVLLSL A D L+Q DVK AFLHG+L E +YM P G
Sbjct: 60 VDYTEIFAPVAKVNTIRVLLSLAANFDWLLQQFDVKNAFLHGELTEEVYMELPLGCNIPE 119
Query: 386 GKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
E VCRL+KSLYGLKQSPR W+ RF M GY + D
Sbjct: 120 ACEKKVCRLKKSLYGLKQSPRAWFGRFTKSMKTFGYSQSNAD 161
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 234 bits (597), Expect = 1e-68
Identities = 109/170 (64%), Positives = 134/170 (78%)
Frame = +2
Query: 2 DERQGWMGAMSEEMESLSKNSVWELVPKPKDRKIIGSKWVYRKKESMNENGAPTYKARLV 181
D+ W+ M +EMESL KN WELV PK++K I KW++++KE M+ + YKARLV
Sbjct: 568 DDCNRWITTMHDEMESLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPSDEARYKARLV 627
Query: 182 AKGFSQKEGIDYDEIFSPVVKHTSIRVLLSLVAQHDMELEQLDVKTAFLHGDLEETIYMS 361
AKG+SQ ID++++FSP+VKH+SIR LLS+VA HD ELEQ+DVKTAFLHG+LEE IYM
Sbjct: 628 AKGYSQIPSIDFNDVFSPIVKHSSIRTLLSIVAMHDYELEQMDVKTAFLHGELEEDIYME 687
Query: 362 QPEGFAEAGKEDLVCRLRKSLYGLKQSPRQWYKRFDSFMLQIGYKRGEYD 511
QPEGF GKE+LVCRL+KSLYGLKQSPRQWYKRFDSFML ++R YD
Sbjct: 688 QPEGFVVPGKENLVCRLKKSLYGLKQSPRQWYKRFDSFMLSQKFRRSNYD 737