BLASTX nr result
ID: Ophiopogon24_contig00026853
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00026853
(375 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_020687863.1| U6 snRNA-associated Sm-like protein LSm6 [De... 65 2e-11
ref|XP_015089276.1| PREDICTED: sm-like protein LSM36B [Solanum p... 65 3e-11
ref|XP_004249138.1| PREDICTED: sm-like protein LSM36B [Solanum l... 65 3e-11
ref|XP_020423650.1| sm-like protein LSM36B [Prunus persica] >gi|... 65 3e-11
ref|XP_008384068.1| PREDICTED: sm-like protein LSM36B [Malus dom... 65 3e-11
ref|XP_008777983.1| PREDICTED: U6 snRNA-associated Sm-like prote... 64 5e-11
ref|XP_010905506.1| PREDICTED: U6 snRNA-associated Sm-like prote... 64 6e-11
gb|ABK26542.1| unknown [Picea sitchensis] 63 2e-10
gb|ABK22473.1| unknown [Picea sitchensis] 63 2e-10
gb|PKA54838.1| putative small nuclear ribonucleoprotein F [Apost... 64 2e-10
dbj|BAF08844.1| Os02g0510100, partial [Oryza sativa Japonica Gro... 63 2e-10
ref|XP_020595748.1| U6 snRNA-associated Sm-like protein LSm6 [Ph... 63 2e-10
ref|XP_015626012.1| PREDICTED: U6 snRNA-associated Sm-like prote... 63 2e-10
ref|XP_020106378.1| U6 snRNA-associated Sm-like protein LSm6 [An... 63 2e-10
ref|XP_018721526.1| PREDICTED: sm-like protein LSM36B isoform X3... 63 2e-10
ref|XP_012075388.1| sm-like protein LSM36B [Jatropha curcas] >gi... 63 2e-10
ref|XP_008243048.1| PREDICTED: sm-like protein LSM36B [Prunus mume] 63 2e-10
ref|XP_010051854.1| PREDICTED: sm-like protein LSM36B [Eucalyptu... 63 2e-10
ref|XP_010066108.1| PREDICTED: sm-like protein LSM36B [Eucalyptu... 63 2e-10
ref|XP_002534408.1| PREDICTED: sm-like protein LSM36B [Ricinus c... 63 2e-10
>ref|XP_020687863.1| U6 snRNA-associated Sm-like protein LSm6 [Dendrobium catenatum]
gb|PKU66349.1| putative small nuclear ribonucleoprotein F [Dendrobium catenatum]
Length = 97
Score = 65.5 bits (158), Expect = 2e-11
Identities = 33/41 (80%), Positives = 33/41 (80%)
Frame = +1
Query: 1 GGGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGG GGS KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 10 GGGGGGGSVKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 50
>ref|XP_015089276.1| PREDICTED: sm-like protein LSM36B [Solanum pennellii]
Length = 90
Score = 65.1 bits (157), Expect = 3e-11
Identities = 32/41 (78%), Positives = 33/41 (80%)
Frame = +1
Query: 1 GGGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
G GEKG + KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GAGEKGSTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 43
>ref|XP_004249138.1| PREDICTED: sm-like protein LSM36B [Solanum lycopersicum]
Length = 90
Score = 65.1 bits (157), Expect = 3e-11
Identities = 32/41 (78%), Positives = 33/41 (80%)
Frame = +1
Query: 1 GGGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
G GEKG + KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GAGEKGSTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 43
>ref|XP_020423650.1| sm-like protein LSM36B [Prunus persica]
ref|XP_021814021.1| sm-like protein LSM36B [Prunus avium]
gb|ONH98832.1| hypothetical protein PRUPE_7G267700 [Prunus persica]
Length = 91
Score = 65.1 bits (157), Expect = 3e-11
Identities = 34/42 (80%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKG-GSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGEKG G+ KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGEKGTGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>ref|XP_008384068.1| PREDICTED: sm-like protein LSM36B [Malus domestica]
ref|XP_008394270.1| PREDICTED: sm-like protein LSM36B [Malus domestica]
ref|XP_009358387.1| PREDICTED: sm-like protein LSM36B [Pyrus x bretschneideri]
ref|XP_009358389.1| PREDICTED: sm-like protein LSM36B [Pyrus x bretschneideri]
ref|XP_009366230.1| PREDICTED: sm-like protein LSM36B [Pyrus x bretschneideri]
ref|XP_009366231.1| PREDICTED: sm-like protein LSM36B [Pyrus x bretschneideri]
ref|XP_017177974.1| PREDICTED: sm-like protein LSM36B [Malus domestica]
Length = 91
Score = 65.1 bits (157), Expect = 3e-11
Identities = 34/42 (80%), Positives = 35/42 (83%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKG-GSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGEKG G+ KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGEKGTGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>ref|XP_008777983.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Phoenix
dactylifera]
Length = 92
Score = 64.3 bits (155), Expect = 5e-11
Identities = 32/41 (78%), Positives = 33/41 (80%)
Frame = +1
Query: 1 GGGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGG GG+ KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 5 GGGGGGGAVKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 45
>ref|XP_010905506.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Elaeis
guineensis]
Length = 93
Score = 64.3 bits (155), Expect = 6e-11
Identities = 32/41 (78%), Positives = 33/41 (80%)
Frame = +1
Query: 1 GGGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGG GG+ KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 6 GGGGGGGAVKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 46
>gb|ABK26542.1| unknown [Picea sitchensis]
Length = 91
Score = 63.2 bits (152), Expect = 2e-10
Identities = 34/42 (80%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKGG-SAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGG GG SAKTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGSGGGTSAKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>gb|ABK22473.1| unknown [Picea sitchensis]
Length = 91
Score = 63.2 bits (152), Expect = 2e-10
Identities = 34/42 (80%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKGG-SAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGG GG SAKTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGSGGGASAKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>gb|PKA54838.1| putative small nuclear ribonucleoprotein F [Apostasia shenzhenica]
Length = 108
Score = 63.5 bits (153), Expect = 2e-10
Identities = 34/44 (77%), Positives = 34/44 (77%), Gaps = 3/44 (6%)
Frame = +1
Query: 4 GGEKG---GSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLLF 126
GGEKG GS KTPAD LKS RGRPVVVKLNSGVDYRG L F
Sbjct: 6 GGEKGASGGSVKTPADFLKSIRGRPVVVKLNSGVDYRGPLSAPF 49
>dbj|BAF08844.1| Os02g0510100, partial [Oryza sativa Japonica Group]
dbj|BAS78853.1| Os02g0510100, partial [Oryza sativa Japonica Group]
Length = 96
Score = 63.2 bits (152), Expect = 2e-10
Identities = 31/41 (75%), Positives = 33/41 (80%)
Frame = +1
Query: 1 GGGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGG GG+ KTP+D LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 9 GGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACL 49
>ref|XP_020595748.1| U6 snRNA-associated Sm-like protein LSm6 [Phalaenopsis equestris]
Length = 97
Score = 63.2 bits (152), Expect = 2e-10
Identities = 32/40 (80%), Positives = 32/40 (80%)
Frame = +1
Query: 4 GGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GG GGS KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 11 GGGGGGSVKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 50
>ref|XP_015626012.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Oryza sativa
Japonica Group]
ref|XP_015626013.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Oryza sativa
Japonica Group]
dbj|BAD23667.1| putative Sm protein F [Oryza sativa Japonica Group]
dbj|BAG86709.1| unnamed protein product [Oryza sativa Japonica Group]
gb|EEE57059.1| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group]
dbj|BAS78852.1| Os02g0510100 [Oryza sativa Japonica Group]
Length = 101
Score = 63.2 bits (152), Expect = 2e-10
Identities = 31/41 (75%), Positives = 33/41 (80%)
Frame = +1
Query: 1 GGGEKGGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGG GG+ KTP+D LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 14 GGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACL 54
>ref|XP_020106378.1| U6 snRNA-associated Sm-like protein LSm6 [Ananas comosus]
ref|XP_020106379.1| U6 snRNA-associated Sm-like protein LSm6 [Ananas comosus]
ref|XP_020106381.1| U6 snRNA-associated Sm-like protein LSm6 [Ananas comosus]
ref|XP_020106382.1| U6 snRNA-associated Sm-like protein LSm6 [Ananas comosus]
gb|OAY73733.1| Sm-like protein LSM36B [Ananas comosus]
Length = 101
Score = 63.2 bits (152), Expect = 2e-10
Identities = 33/43 (76%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Frame = +1
Query: 1 GGGEK--GGSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGE+ GG KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 12 GGGERIGGGGVKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 54
>ref|XP_018721526.1| PREDICTED: sm-like protein LSM36B isoform X3 [Eucalyptus grandis]
Length = 91
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/42 (78%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKGGSA-KTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGEKG + KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>ref|XP_012075388.1| sm-like protein LSM36B [Jatropha curcas]
ref|XP_012075389.1| sm-like protein LSM36B [Jatropha curcas]
ref|XP_021602105.1| sm-like protein LSM36B [Manihot esculenta]
gb|OAY22294.1| hypothetical protein MANES_S013000 [Manihot esculenta]
Length = 91
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/42 (78%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKGGSA-KTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGEKG + KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>ref|XP_008243048.1| PREDICTED: sm-like protein LSM36B [Prunus mume]
Length = 91
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/41 (80%), Positives = 34/41 (82%), Gaps = 1/41 (2%)
Frame = +1
Query: 4 GGEKG-GSAKTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGEKG G+ KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 4 GGEKGTGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>ref|XP_010051854.1| PREDICTED: sm-like protein LSM36B [Eucalyptus grandis]
ref|XP_010051855.1| PREDICTED: sm-like protein LSM36B [Eucalyptus grandis]
gb|KCW75680.1| hypothetical protein EUGRSUZ_D00038 [Eucalyptus grandis]
Length = 91
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/42 (78%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKGGSA-KTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGEKG + KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>ref|XP_010066108.1| PREDICTED: sm-like protein LSM36B [Eucalyptus grandis]
ref|XP_010039337.1| PREDICTED: sm-like protein LSM36B isoform X2 [Eucalyptus grandis]
gb|KCW46057.1| hypothetical protein EUGRSUZ_L00030 [Eucalyptus grandis]
gb|KCW63908.1| hypothetical protein EUGRSUZ_G01590 [Eucalyptus grandis]
gb|OWM84772.1| hypothetical protein CDL15_Pgr027559 [Punica granatum]
Length = 91
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/42 (78%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKGGSA-KTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGEKG + KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44
>ref|XP_002534408.1| PREDICTED: sm-like protein LSM36B [Ricinus communis]
gb|EEF27977.1| small nuclear ribonucleoprotein f, putative [Ricinus communis]
Length = 91
Score = 62.8 bits (151), Expect = 2e-10
Identities = 33/42 (78%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Frame = +1
Query: 1 GGGEKGGSA-KTPADSLKSTRGRPVVVKLNSGVDYRGNLQLL 123
GGGEKG + KTPAD LKS RGRPVVVKLNSGVDYRG L L
Sbjct: 3 GGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACL 44