BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00026572
         (789 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Tritic...    86   1e-15

>gb|EMS62068.1| DNA-directed RNA polymerase subunit alpha [Triticum urartu]
          Length = 430

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 50/105 (47%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
 Frame = +1

Query: 34  EFLRIHPPKEPDMIIFHHPARARIKGMTEXXXXXXXXXXXXXXXE*LYLNDSI*---EKI 204
           E  RIHPPKEPDM I+HHPARAR+K +                      NDS+    +  
Sbjct: 335 ELFRIHPPKEPDMRIYHHPARARVKEIRPRKILNRIKVY----------NDSMTLGKKSF 384

Query: 205 YQILFP--NLQLFIAKNAVLTGKCSISK*AYKFDHNQVLFGLSHI 333
            +  FP  +LQL I  N +L GKCSISK AYKFDH+Q+L GLSH+
Sbjct: 385 IRFSFPKLHLQLLIENNPILMGKCSISKWAYKFDHDQLLCGLSHV 429