BLASTX nr result
ID: Ophiopogon24_contig00026403
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00026403
(2109 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KZV26201.1| hypothetical protein F511_28547 [Dorcoceras hygro... 478 e-153
gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposo... 457 e-148
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc... 452 e-140
gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subc... 452 e-140
gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subc... 451 e-140
gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subc... 454 e-139
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo... 452 e-139
gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subc... 453 e-139
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc... 452 e-139
gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subc... 452 e-139
gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subc... 449 e-138
emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa] 450 e-138
gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group] ... 449 e-137
gb|ABG21864.1| retrotransposon protein, putative, Ty1-copia subc... 445 e-137
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa... 445 e-136
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc... 445 e-136
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group] 439 e-135
gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subc... 440 e-135
gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subc... 441 e-135
dbj|BAB03249.1| polyprotein [Oryza sativa] 437 e-134
>gb|KZV26201.1| hypothetical protein F511_28547 [Dorcoceras hygrometricum]
Length = 979
Score = 478 bits (1230), Expect = e-153
Identities = 264/645 (40%), Positives = 381/645 (59%), Gaps = 16/645 (2%)
Frame = -1
Query: 1887 IMAANTSETLSAKPTEKFDGNNFRRWQNQMRFWLTTLGLITAIEPNTP-FSSRPTTRQQN 1711
+ A S T+ + EKF+G +F+RWQ +M F+LTTL L+ + + P S T + +
Sbjct: 4 VNATVASNTVHGEKPEKFNGTDFKRWQQKMLFYLTTLNLVRFLREDAPTVSENETDKDKR 63
Query: 1710 STTESVSTPRTPQEIDYHCIHRILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIK 1531
+ E+ D+ C + +L L + LY++Y +T+ K LWE+LE KY + G+K
Sbjct: 64 AAFEAWGHG------DFLCRNYVLNGLDNSLYNVYSPMTTAKLLWESLEKKYKTEGAGLK 117
Query: 1530 RFKASDFNKFKMVDTKPMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFA 1351
+F F +KMVD+K + Q+ E + ++ L A G + E+FQVA +I+KLP W F
Sbjct: 118 KFIVGKFLDYKMVDSKSVISQVQEMQLILHDLHAEGMEMSESFQVAAVIEKLPPLWKDFK 177
Query: 1350 KSLSHTQGDLSLTQVMNSIRIEEQHRLREKSNSESKP---NVNNVE---SKGNHGFKPKN 1189
L H + ++ L ++ ++RIEE +R + +S +P N VE SKG FK K+
Sbjct: 178 NYLKHKRKEMGLEDLIINLRIEEDNRKQSESKGTKRPIEDGSNLVEPNASKGKRKFKGKD 237
Query: 1188 NKRPFHXXXXXXXXXXXXXXXXXXXXXXXKDGSEVRH-CYVCGRTNHLAKDCYYKKSAXX 1012
+ G + + CY CG+ NH+AKDC K A
Sbjct: 238 KGK----------------------------GKKFKGTCYNCGKPNHMAKDCRRPKKAKK 269
Query: 1011 XXXXXXXXXXXPQVNMVTSGVGSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQ 832
++ TS V E +V F E NM WW+DTGA H+CS++
Sbjct: 270 EQQGKDVAN-----HLTTSNVVDMEMDLAAVTF--EANMVDNPRQWWVDTGATRHICSEK 322
Query: 831 SLFSTYQVSGGGTVTMGNNDVAPVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSL 652
++FSTY G + MGN+ + V GIG++ LK+TS K L L DV HVPEIR+NL+SGS
Sbjct: 323 AMFSTYVSVTGRKLFMGNSASSDVAGIGKVVLKMTSRKELALIDVLHVPEIRKNLVSGSA 382
Query: 651 LVQQGYKLVFESNKVVISKGLNFIGKGFMNNGLFKLNV-------KHSSISAPIALNIEP 493
LV+ G++LVFESNK ++SK FIGKG++ + LFK+NV + I A + +E
Sbjct: 383 LVKAGFRLVFESNKFILSKNGVFIGKGYLEDNLFKMNVMPVLREFDGNKIKASTYI-VEC 441
Query: 492 SVTWHQRLGHVNYNSIKRLIQLNLIPKFNVKDHDKCEICVEAKLPKKPFKTIDRDSEILE 313
S WH RLGHVNYN++KRL++LNL+P ++ KCE+CVEAK+ K PF +++R + LE
Sbjct: 442 SNLWHGRLGHVNYNTLKRLVKLNLLPTMDINKTHKCEVCVEAKMTKLPFHSVERSTTPLE 501
Query: 312 LIHSDVCD-SGRTSRGGNKYFVTFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEK 136
LIHSD+CD +RGG KYFVTFIDDC++YC++YL++ KDE + F+ YKAEVENQ+++
Sbjct: 502 LIHSDICDLKFVQTRGGKKYFVTFIDDCTRYCYVYLLRGKDEALEAFQNYKAEVENQLDQ 561
Query: 135 TIKILRSDRGGEYTSNELKQFCEDNGFIHEMTAPYTPQSNGVAEK 1
IK +RSDRGGEY + +C +G IH+ TAPY+PQSNGVAE+
Sbjct: 562 RIKNIRSDRGGEYGA-PFDDYCVKSGIIHQTTAPYSPQSNGVAER 605
>gb|KYP31709.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 714
Score = 457 bits (1177), Expect = e-148
Identities = 240/517 (46%), Positives = 340/517 (65%), Gaps = 18/517 (3%)
Frame = -1
Query: 1497 MVDTKPMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLS 1318
M D K ++Q+HEFEN++ +K L + V+ LI KLP SW +FA+SL H + +
Sbjct: 4 MEDGKHFSDQVHEFENIIYDMKMKEITLPDIMLVSLLISKLPPSWSEFARSLKHKPDNFT 63
Query: 1317 LTQVMNSIRIEEQHRLREKSNSESK--------PNVNNVESK--GNHGFKPKNNKRPFHX 1168
L+ ++ ++RIE++HR+ +K ++++ N N + K GF NNK
Sbjct: 64 LSDLLVTLRIEDKHRISQKVSNKTPFQAKAHLVENANKPKQKIFKKSGFS-NNNK---FG 119
Query: 1167 XXXXXXXXXXXXXXXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXX 988
G+E C+VCGR NH AKDC++++
Sbjct: 120 QSSHFSKNKNKAFNNNYKPKSKIQGNE-SFCFVCGRNNHFAKDCFHRRRQPKDITSDPKS 178
Query: 987 XXXPQVNMVTSGVGSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQV 808
PQ N++T+ S + R + +PE+N + +NDWWID+GAN+HVC+D+ LFS+YQ
Sbjct: 179 SSQPQANVITANASSDSPSNRYHVTSPELNFIYNSNDWWIDSGANVHVCADKKLFSSYQE 238
Query: 807 SGGGTVTMGNNDVAPVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKL 628
G TV+MGN +A V+G+GR+ L+L+S L L +V HV EIR+NLIS +LLVQQG+K+
Sbjct: 239 CGTRTVSMGNGSLARVIGLGRVELELSSGNCLVLDEVFHVSEIRKNLISAALLVQQGFKV 298
Query: 627 VFESNKVVISKGLNFIGKGFMNNGLFKLNV------KHSSISAPIALNIEPSVTWHQRLG 466
VFESN+VVIS+ +F+GKG++ +GLFKL++ K+SSIS+ N+E WH RLG
Sbjct: 299 VFESNRVVISRHGSFVGKGYICDGLFKLSIMSSFINKNSSISSSSISNVECCDIWHGRLG 358
Query: 465 HVNYNSIKRLIQLNLIPKFNVKDHDKCEICVEAKLPKKPFK-TIDRDSEILELIHSDVCD 289
HVN NSIKR++ L+LIPK + KCE+CV+AK P+K F+ ++ +++ +LELIHSD+CD
Sbjct: 359 HVNLNSIKRMMTLDLIPKSFNELKQKCEVCVQAKQPRKSFQNSVQKETCVLELIHSDICD 418
Query: 288 S-GRTSRGGNKYFVTFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSD 112
S G +RGG KYF+TFIDD SKYC++YLI K E+ KFKVYKAEVENQ+E++IKILRSD
Sbjct: 419 SNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSIKILRSD 478
Query: 111 RGGEYTSNELKQFCEDNGFIHEMTAPYTPQSNGVAEK 1
RGGEY+SNE+ +F E +G IHE+T PY PQSNG+AE+
Sbjct: 479 RGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAER 515
>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1303
Score = 452 bits (1164), Expect = e-140
Identities = 246/623 (39%), Positives = 362/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 127 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 173
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 174 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 233
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 234 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 293
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 294 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 341
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 342 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 387
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 388 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNESL 445
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 446 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 505
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ S WH RL HVN+ + RL ++
Sbjct: 506 TFVGKGYDSGGLFRFSLNDMCNNHNAVNH--ISEIDESNVWHSRLCHVNFGCLTRLANMS 563
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 564 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 623
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 624 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 683
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 684 EEFGIIHEMTPPYSPQSNGVAER 706
>gb|ABA98084.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1298
Score = 452 bits (1163), Expect = e-140
Identities = 248/623 (39%), Positives = 365/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 127 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 173
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 174 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 233
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 234 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 293
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 294 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 341
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 342 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 387
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 388 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 445
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 446 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 505
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 506 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 563
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 564 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 623
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 624 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 683
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 684 EEFGIIHEMTPPYSPQSNGVAER 706
>gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1287
Score = 451 bits (1161), Expect = e-140
Identities = 248/623 (39%), Positives = 365/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 127 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 173
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 174 CLFRGALISVLADNIVDVYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 233
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 234 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 293
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 294 GSLGVEEKARAKDVRGKKVEGGCSANMVQKKNPHA--SHNNKK----------VKPDVKP 341
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 342 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDKK-------------SANMIISE- 387
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 388 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 445
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 446 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 505
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 506 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 563
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 564 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 623
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 624 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 683
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 684 EEFGIIHEMTPPYSPQSNGVAER 706
>gb|ABA99813.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1448
Score = 454 bits (1167), Expect = e-139
Identities = 249/623 (39%), Positives = 366/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 162 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 208
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 209 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDNR 268
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S++ ++
Sbjct: 269 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVSDLI 328
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 329 GSLGVEEKARAKDVRGKKVEGCSSANMVQKKNPHA--SHNNKK----------VKPDVKP 376
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NMV S
Sbjct: 377 KAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMVISE- 422
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 423 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 480
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 481 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 540
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 541 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 598
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 599 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 658
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 659 TLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 718
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 719 EEFGIIHEMTPPYSPQSNGVAER 741
>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
Length = 1394
Score = 452 bits (1164), Expect = e-139
Identities = 247/622 (39%), Positives = 363/622 (58%), Gaps = 10/622 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 108 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 154
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 155 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGISDAGSELYVMEQFYDYKMVDDR 214
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 215 SVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDLI 274
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 275 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 322
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 323 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 368
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 369 GGGTSGYGKIL--PRVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 426
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 427 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 486
Query: 588 NFIGKGFMNNGLFKLNV----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLNL 421
F+GKG+ + GLF+ ++ + ++ I+ N E +V WH RL HVN+ + RL ++L
Sbjct: 487 TFVGKGYDSGGLFRFSLNDMCNNHNVVNHISENDESNV-WHSRLCHVNFGCMTRLANMSL 545
Query: 420 IPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVT 247
IPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+T
Sbjct: 546 IPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMT 605
Query: 246 FIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFCE 67
IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FCE
Sbjct: 606 LIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCE 665
Query: 66 DNGFIHEMTAPYTPQSNGVAEK 1
+ G IHEMT PY+PQSNGVAE+
Sbjct: 666 EFGIIHEMTPPYSPQSNGVAER 687
>gb|ABA97124.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1453
Score = 453 bits (1166), Expect = e-139
Identities = 248/623 (39%), Positives = 365/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 167 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 213
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 214 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYIMEQFYDYKMVDDR 273
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 274 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 333
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 334 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 381
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 382 KAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 427
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 428 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVERGSSLLMGNGSL 485
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 486 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 545
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 546 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISKNDESNV-WHSRLCHVNFGCMTRLANMS 603
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 604 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGMLTKGGKKYFM 663
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 664 TLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 723
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 724 EEFGIIHEMTPPYSPQSNGVAER 746
>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1413
Score = 452 bits (1164), Expect = e-139
Identities = 247/622 (39%), Positives = 363/622 (58%), Gaps = 10/622 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 127 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 173
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 174 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGISDAGSELYVMEQFYDYKMVDDR 233
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 234 SVVEQAHEIQMLAKELENNNCELPDKFVAGDIIAKLPPSWSDFATSLKHKRQEFSVPDLI 293
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 294 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 341
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 342 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 387
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 388 GGGTSGYGKIL--PRVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 445
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 446 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 505
Query: 588 NFIGKGFMNNGLFKLNV----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLNL 421
F+GKG+ + GLF+ ++ + ++ I+ N E +V WH RL HVN+ + RL ++L
Sbjct: 506 TFVGKGYDSGGLFRFSLNDMCNNHNVVNHISENDESNV-WHSRLCHVNFGCMTRLANMSL 564
Query: 420 IPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFVT 247
IPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+T
Sbjct: 565 IPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFMT 624
Query: 246 FIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFCE 67
IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FCE
Sbjct: 625 LIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCE 684
Query: 66 DNGFIHEMTAPYTPQSNGVAEK 1
+ G IHEMT PY+PQSNGVAE+
Sbjct: 685 EFGIIHEMTPPYSPQSNGVAER 706
>gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1452
Score = 452 bits (1164), Expect = e-139
Identities = 248/623 (39%), Positives = 365/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 170 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 216
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 217 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 276
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 277 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 336
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 337 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 384
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 385 KAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 430
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 431 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 488
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 489 AVVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYE 548
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 549 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMMRLANMS 606
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 607 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 666
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 667 TLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 726
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 727 EEFGIIHEMTPPYSPQSNGVAER 749
>gb|AAP54028.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1361
Score = 449 bits (1156), Expect = e-138
Identities = 247/623 (39%), Positives = 365/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++++ E+
Sbjct: 149 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEDAKFEASD----------- 195
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 196 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 255
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 256 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 315
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 316 GSLGVEEKARAKDIRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 363
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 364 KAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 409
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTG NIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 410 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGTNIHVCADISLFSSYQVGRGSSLLMGNGLL 467
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 468 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 527
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 528 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 585
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 586 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 645
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 646 TLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 705
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 706 EEFGIIHEMTPPYSPQSNGVAER 728
>emb|CAH66912.1| OSIGBa0126B18.5 [Oryza sativa]
Length = 1413
Score = 450 bits (1157), Expect = e-138
Identities = 247/623 (39%), Positives = 365/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 127 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 173
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 174 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 233
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 234 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 293
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 294 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 341
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 342 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 387
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 388 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGFSLLMGNGSL 445
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 446 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 505
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 506 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 563
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 564 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 623
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 624 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 683
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNG+AE+
Sbjct: 684 EEFGIIHEMTPPYSPQSNGMAER 706
>gb|AAS07202.1| putative integrase [Oryza sativa Japonica Group]
gb|ABF96711.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1456
Score = 449 bits (1154), Expect = e-137
Identities = 247/623 (39%), Positives = 364/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 170 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 216
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W++LE K+G+ D G + + F +KMVD +
Sbjct: 217 CLFRGALISVLADNIVDVYMHMPSGKDMWDSLEAKFGVSDAGSELYVMEQFYDYKMVDDR 276
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 277 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 336
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 337 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 384
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 385 KAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 430
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ M N +
Sbjct: 431 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMVNGSL 488
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 489 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 548
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 549 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 606
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G + GG KYF+
Sbjct: 607 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTNGGKKYFM 666
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 667 TLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 726
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 727 EEFGIIHEMTPPYSPQSNGVAER 749
>gb|ABG21864.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1297
Score = 445 bits (1144), Expect = e-137
Identities = 246/623 (39%), Positives = 363/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 84 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 130
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD
Sbjct: 131 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDH 190
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 191 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 250
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 251 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 298
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NMV S
Sbjct: 299 KAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMVISE- 344
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V + + DWW+DTGANIH+C+D SLFS+YQV G ++ MGN +
Sbjct: 345 GGGTSGYGKML--PTVLSVYHSPDWWVDTGANIHICADISLFSSYQVGRGSSLLMGNGSL 402
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 403 AAVHGVGTVDLKFTSGKTVQLKNVQHVPLIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 462
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GK + + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 463 TFVGKCYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 520
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 521 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 580
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 581 TLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 640
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 641 EEFGIIHEMTPPYSPQSNGVAER 663
>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1408
Score = 445 bits (1145), Expect = e-136
Identities = 247/623 (39%), Positives = 363/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 122 FDGSNYKRWKTRALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 168
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K + + LE K+G+ D G + + F +KMVD +
Sbjct: 169 CLFRGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 228
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 229 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 288
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 289 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 336
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 337 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 382
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 383 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 440
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++ ++LVFESNK V+SK
Sbjct: 441 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYG 500
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 501 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 558
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LELIHSD+C+ +G ++GG KYF+
Sbjct: 559 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFM 618
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 619 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 678
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 679 EEFGIIHEMTPPYSPQSNGVAER 701
>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1479
Score = 445 bits (1145), Expect = e-136
Identities = 247/623 (39%), Positives = 363/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 193 FDGSNYKRWKTRALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 239
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K + + LE K+G+ D G + + F +KMVD +
Sbjct: 240 CLFRGALISVLADNIVDVYMHMPSGKDMRDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 299
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 300 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 359
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 360 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 407
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 408 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 453
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 454 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 511
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++ ++LVFESNK V+SK
Sbjct: 512 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYG 571
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 572 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 629
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LELIHSD+C+ +G ++GG KYF+
Sbjct: 630 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELIHSDLCEMNGVLTKGGKKYFM 689
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 690 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 749
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 750 EEFGIIHEMTPPYSPQSNGVAER 772
>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 439 bits (1130), Expect = e-135
Identities = 236/563 (41%), Positives = 341/563 (60%), Gaps = 11/563 (1%)
Frame = -1
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 29 CLFRGALISVLADNIVDVYMHMPSRKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 88
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 89 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 148
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 149 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 196
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 197 KAATNFKKKSKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 242
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 243 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 300
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 301 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 360
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 361 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 418
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF
Sbjct: 419 LIPKFTLVKDSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFT 478
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 479 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 538
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 539 EEFGIIHEMTPPYSPQSNGVAER 561
>gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1314
Score = 440 bits (1131), Expect = e-135
Identities = 243/623 (39%), Positives = 362/623 (58%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + ++ + E+
Sbjct: 154 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPEEEAKFEASD----------- 200
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 201 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 260
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 261 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVPDLI 320
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +E++ R ++ E + N V+ K H NNK+
Sbjct: 321 GSLGVEKKARAKDVQGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 368
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 369 KTATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 414
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ +GN +
Sbjct: 415 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLIGNGSL 472
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 473 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 532
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 533 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 590
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LI KF + K CV++K P+KP K + R+ LE +HSD+C+ +G ++GG KYF+
Sbjct: 591 LISKFTLVKGSKYHTCVQSKQPRKPHKASEARNLAPLEHVHSDLCEMNGVLTKGGKKYFM 650
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 651 TLIDDCTRFCYVYLLKTKDETLHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 710
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 711 EEFGIIHEMTPPYSPQSNGVAER 733
>gb|ABG66192.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1457
Score = 441 bits (1135), Expect = e-135
Identities = 244/623 (39%), Positives = 361/623 (57%), Gaps = 11/623 (1%)
Frame = -1
Query: 1836 FDGNNFRRWQNQMRFWLTTLGLITAIEPNTPFSSRPTTRQQNSTTESVSTPRTPQEIDYH 1657
FDG+N++RW+ + WLT + S P + + + E+
Sbjct: 171 FDGSNYKRWKARALLWLTAMQCFYVSRGKR--SEPPLSPDEEAKFEASD----------- 217
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 218 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 277
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ +E + L +L+ N L + F +I KLP SW A SL H + + S+ ++
Sbjct: 278 SVVEQAYEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDLATSLKHKRQEFSVPDLI 337
Query: 1302 NSIRIEEQHRLR--EKSNSESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R + E + N V+ K H NNK+
Sbjct: 338 GSLGVEEKARAKYVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 385
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 386 KAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 431
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 432 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 489
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++G++LVFESNK V+SK
Sbjct: 490 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYG 549
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 550 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 607
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LI KF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 608 LISKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 667
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 668 TLIDDCTRFCYVYLLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 727
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEM+ PY+PQSNGVAE+
Sbjct: 728 EEFGIIHEMSPPYSPQSNGVAER 750
>dbj|BAB03249.1| polyprotein [Oryza sativa]
Length = 1268
Score = 437 bits (1123), Expect = e-134
Identities = 235/563 (41%), Positives = 341/563 (60%), Gaps = 11/563 (1%)
Frame = -1
Query: 1656 CIHR--ILGALSDRLYDIYYTITSPKTLWETLENKYGLDDTGIKRFKASDFNKFKMVDTK 1483
C+ R ++ L+D + D+Y + S K +W+ LE K+G+ D G + + F +KMVD +
Sbjct: 29 CLFRGALISVLADNIVDVYMHMPSGKDMWDALEAKFGVSDAGSELYVMEQFYDYKMVDDR 88
Query: 1482 PMNEQIHEFENLVLQLKANGSNLDETFQVACLIDKLPDSWIKFAKSLSHTQGDLSLTQVM 1303
+ EQ HE + L +L+ N L + F +I KLP SW FA SL H + + S+ ++
Sbjct: 89 SVVEQAHEIQMLAKELENNNCELPDKFVAGGIIAKLPPSWSDFATSLKHKRQEFSVLDLI 148
Query: 1302 NSIRIEEQHRLREKSNS--ESKPNVNNVESKGNHGFKPKNNKRPFHXXXXXXXXXXXXXX 1129
S+ +EE+ R ++ E + N V+ K H NNK+
Sbjct: 149 GSLGVEEKARAKDVRGKKVEGGSSANMVQKKNPHA--SHNNKK----------VKPDVKP 196
Query: 1128 XXXXXXXXXKDGSEVRHCYVCGRTNHLAKDCYYKKSAXXXXXXXXXXXXXPQVNMVTSGV 949
G C+VCG++ H AKDC +K NM+ S
Sbjct: 197 KAATNFKKKSKGKANGDCFVCGKSGHWAKDCPERKDRK-------------SANMIISE- 242
Query: 948 GSSETAFRSVLFTPEVNMTFQANDWWIDTGANIHVCSDQSLFSTYQVSGGGTVTMGNNDV 769
G + + +L P V F + DWW+DTGANIHVC+D SLFS+YQV G ++ MGN +
Sbjct: 243 GGGTSGYGKIL--PTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 300
Query: 768 APVLGIGRINLKLTSEKTLTLQDVHHVPEIRRNLISGSLLVQQGYKLVFESNKVVISKGL 589
A V G+G ++LK TS KT+ L++V HVP I++NL+SGSLL ++ ++LVFESNK V+SK
Sbjct: 301 AAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVSGSLLCREDFRLVFESNKCVVSKYE 360
Query: 588 NFIGKGFMNNGLFKLNV-----KHSSISAPIALNIEPSVTWHQRLGHVNYNSIKRLIQLN 424
F+GKG+ + GLF+ ++ H++++ I+ N E +V WH RL HVN+ + RL ++
Sbjct: 361 TFVGKGYDSGGLFRFSLNDMCNNHNAVN-HISENDESNV-WHSRLCHVNFGCMTRLANMS 418
Query: 423 LIPKFNVKDHDKCEICVEAKLPKKPFKTID-RDSEILELIHSDVCD-SGRTSRGGNKYFV 250
LIPKF + KC CV++K P+KP K + R+ LEL+HSD+C+ +G ++GG KYF+
Sbjct: 419 LIPKFTLVKGSKCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCEMNGVLTKGGKKYFM 478
Query: 249 TFIDDCSKYCHLYLIKTKDEVVNKFKVYKAEVENQVEKTIKILRSDRGGEYTSNELKQFC 70
T IDDC+++C++YL+KTKDE ++ FK+YKAEVENQ+E+ IK LRSDRGGEY SNE FC
Sbjct: 479 TLIDDCTRFCYVYLLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFC 538
Query: 69 EDNGFIHEMTAPYTPQSNGVAEK 1
E+ G IHEMT PY+PQSNGVAE+
Sbjct: 539 EEFGIIHEMTPPYSPQSNGVAER 561