BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00025308
         (580 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020259135.1| CRM-domain containing factor CFM3, chloropla...   122   1e-28
ref|XP_010912991.1| PREDICTED: CRM-domain containing factor CFM3...    68   7e-10
ref|XP_015880744.1| PREDICTED: CRM-domain containing factor CFM3...    66   3e-09
ref|XP_015880674.1| PREDICTED: CRM-domain containing factor CFM3...    66   4e-09
ref|XP_020105854.1| CRM-domain containing factor CFM3, chloropla...    66   4e-09
ref|XP_015973539.1| CRM-domain containing factor CFM3, chloropla...    64   2e-08
ref|XP_010242233.1| PREDICTED: CRM-domain containing factor CFM3...    64   2e-08
ref|XP_018826209.1| PREDICTED: CRM-domain containing factor CFM3...    64   3e-08
ref|XP_016202208.1| CRM-domain containing factor CFM3, chloropla...    63   5e-08
ref|XP_020581539.1| LOW QUALITY PROTEIN: CRM-domain containing f...    62   1e-07
gb|KMZ63398.1| Chloroplastic group IIA intron splicing facilitat...    61   2e-07
ref|XP_011460155.1| PREDICTED: chloroplastic group IIA intron sp...    61   2e-07
ref|XP_010090056.1| CRM-domain containing factor CFM3A, chloropl...    60   4e-07
gb|PON46791.1| RNA-binding, CRM domain containing protein [Paras...    60   4e-07
gb|OAY27121.1| hypothetical protein MANES_16G101200 [Manihot esc...    60   6e-07
ref|XP_021597403.1| CRM-domain containing factor CFM3, chloropla...    60   6e-07
ref|XP_021597402.1| CRM-domain containing factor CFM3, chloropla...    60   6e-07
ref|XP_020184416.1| CRM-domain containing factor CFM3, chloropla...    59   9e-07
ref|XP_020184415.1| uncharacterized protein LOC109770114 isoform...    59   9e-07
emb|CBI27903.3| unnamed protein product, partial [Vitis vinifera]      59   1e-06

>ref|XP_020259135.1| CRM-domain containing factor CFM3, chloroplastic/mitochondrial
           [Asparagus officinalis]
 gb|ONK76559.1| uncharacterized protein A4U43_C03F29530 [Asparagus officinalis]
          Length = 907

 Score =  122 bits (305), Expect = 1e-28
 Identities = 73/158 (46%), Positives = 97/158 (61%), Gaps = 28/158 (17%)
 Frame = +2

Query: 134 PQTIILPILHQRTHFKLHAHLPTPALHSSNNGNSS----------SIDKKRKKKP-RPSF 280
           P  +ILP+ HQR HFKL+AHLP     S++NG  S           I K RKKK  RPSF
Sbjct: 19  PCNLILPLPHQRAHFKLYAHLPI----STHNGEISPQLEPHADPTEIKKNRKKKKIRPSF 74

Query: 281 YDQTIERWSLRISSPRSRFPWQEQ----------PAAETRKKNDDSRDTHLNSGLDFENP 430
           Y+QT+ERWSLRISS RS++PW+++              + +  D+SRDTHL+SG++FENP
Sbjct: 75  YEQTLERWSLRISSQRSKYPWEKKKDDGPSLTASSGLASDQFLDNSRDTHLSSGVNFENP 134

Query: 431 ERDFE-------GRSKGESFGRNGPWVPLGMQRGAAPW 523
           ER+FE       G S+G +F ++       +QRGAAPW
Sbjct: 135 EREFEVSEVGSFGSSEGGNFDKDEG--SFRVQRGAAPW 170


>ref|XP_010912991.1| PREDICTED: CRM-domain containing factor CFM3,
           chloroplastic/mitochondrial-like [Elaeis guineensis]
          Length = 1105

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 37/75 (49%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
 Frame = +2

Query: 158 LHQRTHFKLHAHLPTPALHSSNNGNS----SSIDKKRKKKPRPSFYDQTIERWSLRISSP 325
           LH+   +     LP P+  SS   +         KK+K+KPRP+FY QTIERWSL+ISS 
Sbjct: 45  LHRLDAYLSPQTLPDPSEESSEADSPYPGVEIKKKKKKRKPRPNFYVQTIERWSLKISSE 104

Query: 326 RSRFPWQEQPAAETR 370
           RSRFPWQE  A E +
Sbjct: 105 RSRFPWQELAAEEKK 119


>ref|XP_015880744.1| PREDICTED: CRM-domain containing factor CFM3,
           chloroplastic/mitochondrial-like [Ziziphus jujuba]
          Length = 895

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 37/98 (37%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
 Frame = +2

Query: 242 IDKKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHLNSGLDF 421
           I KK+ +KP+PSF +Q  ++WS +++SPR +FPWQEQ   E R  +D   D         
Sbjct: 70  ITKKKNRKPKPSFLEQIRDKWSTKLASPREKFPWQEQQEQE-RIDDDGGSDA-------- 120

Query: 422 ENPERDFEGRSKGESFGRNGPWVPLGMQRG--AAPWAH 529
              E + E +  G++  +    V LGMQR   +APW+H
Sbjct: 121 ---EEEAEIKVDGKAASKGDHPVGLGMQRRLISAPWSH 155


>ref|XP_015880674.1| PREDICTED: CRM-domain containing factor CFM3,
           chloroplastic/mitochondrial-like [Ziziphus jujuba]
 ref|XP_015887542.1| PREDICTED: CRM-domain containing factor CFM3,
           chloroplastic/mitochondrial-like [Ziziphus jujuba]
          Length = 890

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
 Frame = +2

Query: 242 IDKKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHLNSGLDF 421
           I KK+ +KP+PSF +Q  ++WS ++ SPR +FPWQEQ   E R  +D   D         
Sbjct: 69  ITKKKNRKPKPSFLEQIRDKWSTKLGSPREKFPWQEQQEQE-RIDDDGGSDA-------- 119

Query: 422 ENPERDFEGRSKGESFGRNGPWVPLGMQRG--AAPWAH 529
              E + E +  G++  +    V LGMQR   +APW+H
Sbjct: 120 ---EEEAEIKVDGKAASKGDHPVGLGMQRRLISAPWSH 154


>ref|XP_020105854.1| CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like
           [Ananas comosus]
 gb|OAY75408.1| Chloroplastic group IIA intron splicing facilitator CRS1,
           chloroplastic [Ananas comosus]
          Length = 1037

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 28/39 (71%), Positives = 35/39 (89%)
 Frame = +2

Query: 248 KKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAE 364
           KK+KKK RP+FYDQT+ERWS++ISS RSRFPWQE+ + E
Sbjct: 91  KKKKKKLRPNFYDQTLERWSVKISSQRSRFPWQEKRSEE 129


>ref|XP_015973539.1| CRM-domain containing factor CFM3, chloroplastic/mitochondrial
           [Arachis duranensis]
          Length = 858

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
 Frame = +2

Query: 209 LHSSNNGNSSSIDKKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDS 388
           L +SNN  +    KK+K  PRPSF+DQ  ++WS ++ S R R PWQEQ + E  ++ ++ 
Sbjct: 64  LEASNNTENKIKKKKKKSNPRPSFFDQIRDKWSHKLGSQRERLPWQEQQSEEEEEEEEEE 123

Query: 389 RDTHLNSGLDFENPERDFEGRSKGESFGRNGPWVPLGMQ--RGAAPWA 526
            +       + E  + D EG  + E   +N     L  Q  +  +PWA
Sbjct: 124 EEEE-----EEEEDDDDDEGEEE-ECDQKNSASYSLDFQFPKRLSPWA 165


>ref|XP_010242233.1| PREDICTED: CRM-domain containing factor CFM3,
           chloroplastic/mitochondrial [Nelumbo nucifera]
          Length = 868

 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 35/93 (37%), Positives = 49/93 (52%)
 Frame = +2

Query: 251 KRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHLNSGLDFENP 430
           K+K+K +PSFYDQ  +RWSL++ SPR R PWQEQ +    +  +D   +  NS       
Sbjct: 68  KKKRKLKPSFYDQIRDRWSLKLGSPRERLPWQEQESQGQEETGNDQSSSAPNSS------ 121

Query: 431 ERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
               EG     SF     +  LG +  +APW+H
Sbjct: 122 ----EGDGGNPSFDDLASFA-LGNRSISAPWSH 149


>ref|XP_018826209.1| PREDICTED: CRM-domain containing factor CFM3,
           chloroplastic/mitochondrial [Juglans regia]
          Length = 910

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 36/107 (33%), Positives = 54/107 (50%)
 Frame = +2

Query: 209 LHSSNNGNSSSIDKKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDS 388
           L SS  GN+       K+KPRPSF++Q  E+WSL++ S R +FPW+E    E  ++ +  
Sbjct: 69  LVSSETGNT-------KRKPRPSFFEQIREKWSLKLGSTRKKFPWEEPEQREKLEQKEQE 121

Query: 389 RDTHLNSGLDFENPERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
            +   +     E+   D E  S+  SF  +  +VP       APW H
Sbjct: 122 ENRDFSGASVSESEVDDKESVSEPASFVLSNVFVP-------APWVH 161


>ref|XP_016202208.1| CRM-domain containing factor CFM3, chloroplastic/mitochondrial
           [Arachis ipaensis]
          Length = 856

 Score = 62.8 bits (151), Expect = 5e-08
 Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
 Frame = +2

Query: 194 LPTPALHSSNNGNSSSIDKKRKKKP--RPSFYDQTIERWSLRISSPRSRFPWQEQPAAET 367
           LP      ++N   + I KK+KKK   RPSF+DQ  ++WS ++ S R R PWQEQ +AE 
Sbjct: 59  LPVKVPLEASNNTENKIKKKKKKKSNLRPSFFDQIRDKWSHKLGSQRERLPWQEQQSAEE 118

Query: 368 RKKNDDSRDTHLNSGLDFENPERDFEGRSKGESFGRNGPWVPLGMQ--RGAAPWA 526
            +  D+  +         E+ + D EG  + E   +N     L  Q  +  +PWA
Sbjct: 119 EEDEDEEEE---------EDDDDDDEGEEE-ECDQKNSASYSLDFQFPKRLSPWA 163


>ref|XP_020581539.1| LOW QUALITY PROTEIN: CRM-domain containing factor CFM3,
           chloroplastic/mitochondrial-like [Phalaenopsis
           equestris]
          Length = 934

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 32/68 (47%), Positives = 45/68 (66%), Gaps = 4/68 (5%)
 Frame = +2

Query: 182 LHAHLPTPALHSSNNGNSSSIDKKRKKKP----RPSFYDQTIERWSLRISSPRSRFPWQE 349
           L+AH    A  SS   N SS +KK+K K     RP+FY QT+++WS++ISS R++ PWQ+
Sbjct: 41  LNAHRHQEA-ESSLEDNKSSTEKKKKNKTEKELRPNFYHQTLKKWSVKISSQRTKLPWQQ 99

Query: 350 QPAAETRK 373
           Q A ET +
Sbjct: 100 QGAEETER 107


>gb|KMZ63398.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Zostera
           marina]
          Length = 876

 Score = 61.2 bits (147), Expect = 2e-07
 Identities = 25/73 (34%), Positives = 45/73 (61%)
 Frame = +2

Query: 167 RTHFKLHAHLPTPALHSSNNGNSSSIDKKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQ 346
           +T      +L   A+ S ++ N +   +K+++K RPSF+DQT+ERWS +++S R +FPW+
Sbjct: 34  KTQLVFRRNLALQAVPSPDSSNGTIAVEKKRRKLRPSFFDQTVERWSRKVTSKREKFPWE 93

Query: 347 EQPAAETRKKNDD 385
            +   E  + + D
Sbjct: 94  VEKGVEGERGSSD 106


>ref|XP_011460155.1| PREDICTED: chloroplastic group IIA intron splicing facilitator
           CRS1, chloroplastic [Fragaria vesca subsp. vesca]
          Length = 952

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 30/93 (32%), Positives = 52/93 (55%)
 Frame = +2

Query: 251 KRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHLNSGLDFENP 430
           K+K+KP+PSFY Q  ++WS+++ SPR +FPWQ Q  +E  +++++ ++     G   ++ 
Sbjct: 48  KKKRKPKPSFYQQIQDKWSMKVDSPRHKFPWQNQEESEDEEEDEEEKE----EGESQQSE 103

Query: 431 ERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
            R F+   +  SF    P          APWA+
Sbjct: 104 VRVFKPVDQEMSFSMPNP-------VKYAPWAN 129


>ref|XP_010090056.1| CRM-domain containing factor CFM3A, chloroplastic/mitochondrial
           [Morus notabilis]
 gb|EXB38853.1| Chloroplastic group IIA intron splicing facilitator CRS1 [Morus
           notabilis]
          Length = 859

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 32/93 (34%), Positives = 51/93 (54%)
 Frame = +2

Query: 251 KRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHLNSGLDFENP 430
           K+K+KP+PSF++Q  E+WS +I S R +FPWQE+ + +  ++  D+ +    + +D +  
Sbjct: 73  KKKRKPKPSFFEQIQEKWSAKIGSTREKFPWQEESSQD--EQEGDNEEEERETEIDVK-- 128

Query: 431 ERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
               E  S   SFG     V       +APWAH
Sbjct: 129 ----ESASDSVSFGGKNGVV-------SAPWAH 150


>gb|PON46791.1| RNA-binding, CRM domain containing protein [Parasponia andersonii]
          Length = 883

 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 27/94 (28%), Positives = 51/94 (54%)
 Frame = +2

Query: 248 KKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHLNSGLDFEN 427
           +++K+KPRPSF++Q  ++W+ ++ S R +FPWQE+   +  ++ +++++         E 
Sbjct: 75  QRKKRKPRPSFFEQIRDKWTAKLGSQREKFPWQEESIWQEHQEQEEAKEN--------EE 126

Query: 428 PERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
                   +  ESFGR    +       +APWAH
Sbjct: 127 EGESHMSLNDSESFGRQSSVI-------SAPWAH 153


>gb|OAY27121.1| hypothetical protein MANES_16G101200 [Manihot esculenta]
          Length = 837

 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +2

Query: 257 KKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHL--NSGLDFENP 430
           K+KPRPSF++Q  ++WS+R+ S R +FPW+EQ   ++++++D+  +  +   SG  F   
Sbjct: 50  KRKPRPSFFEQIRDKWSVRVPSKREKFPWEEQKQQQSQEEDDEEEEIEVQQTSGTVFGEA 109

Query: 431 ERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
           E D       +S         L  +   APW H
Sbjct: 110 ETDASTSVNDDSVS-----FTLPSRFITAPWIH 137


>ref|XP_021597403.1| CRM-domain containing factor CFM3, chloroplastic/mitochondrial
           isoform X2 [Manihot esculenta]
 gb|OAY27122.1| hypothetical protein MANES_16G101200 [Manihot esculenta]
          Length = 907

 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +2

Query: 257 KKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHL--NSGLDFENP 430
           K+KPRPSF++Q  ++WS+R+ S R +FPW+EQ   ++++++D+  +  +   SG  F   
Sbjct: 50  KRKPRPSFFEQIRDKWSVRVPSKREKFPWEEQKQQQSQEEDDEEEEIEVQQTSGTVFGEA 109

Query: 431 ERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
           E D       +S         L  +   APW H
Sbjct: 110 ETDASTSVNDDSVS-----FTLPSRFITAPWIH 137


>ref|XP_021597402.1| CRM-domain containing factor CFM3, chloroplastic/mitochondrial
           isoform X1 [Manihot esculenta]
          Length = 908

 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +2

Query: 257 KKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKNDDSRDTHL--NSGLDFENP 430
           K+KPRPSF++Q  ++WS+R+ S R +FPW+EQ   ++++++D+  +  +   SG  F   
Sbjct: 50  KRKPRPSFFEQIRDKWSVRVPSKREKFPWEEQKQQQSQEEDDEEEEIEVQQTSGTVFGEA 109

Query: 431 ERDFEGRSKGESFGRNGPWVPLGMQRGAAPWAH 529
           E D       +S         L  +   APW H
Sbjct: 110 ETDASTSVNDDSVS-----FTLPSRFITAPWIH 137


>ref|XP_020184416.1| CRM-domain containing factor CFM3, chloroplastic/mitochondrial-like
           isoform X2 [Aegilops tauschii subsp. tauschii]
          Length = 430

 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 30/144 (20%)
 Frame = +2

Query: 188 AHLPTPALHS-----SNNGNSSSIDKKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQ 352
           A  P+P+  S     + +G + +  KK+++  +PSF +Q + RWS R  S R+ FPWQ Q
Sbjct: 41  ASAPSPSTSSPYKAPALDGGTETRKKKKRRNLKPSFEEQALRRWSARAPSQRASFPWQRQ 100

Query: 353 PAAETRKKNDDSRDTHLNSG--------LDFENPERDFEGRSKGESFGRNG--------- 481
                 ++N+ + D   +S          D+++ E    G  +G+  G +G         
Sbjct: 101 QPQPAHRQNEGAEDHEPSSATLRSIVEYFDYDSSEDGGGGVGEGKDKGNDGVAHGEAAHD 160

Query: 482 --------PWVPLGMQRGAAPWAH 529
                   P   LG +  +APW H
Sbjct: 161 RDEESRSQPTYLLGSRPVSAPWMH 184


>ref|XP_020184415.1| uncharacterized protein LOC109770114 isoform X1 [Aegilops tauschii
           subsp. tauschii]
          Length = 447

 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 30/144 (20%)
 Frame = +2

Query: 188 AHLPTPALHS-----SNNGNSSSIDKKRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQ 352
           A  P+P+  S     + +G + +  KK+++  +PSF +Q + RWS R  S R+ FPWQ Q
Sbjct: 41  ASAPSPSTSSPYKAPALDGGTETRKKKKRRNLKPSFEEQALRRWSARAPSQRASFPWQRQ 100

Query: 353 PAAETRKKNDDSRDTHLNSG--------LDFENPERDFEGRSKGESFGRNG--------- 481
                 ++N+ + D   +S          D+++ E    G  +G+  G +G         
Sbjct: 101 QPQPAHRQNEGAEDHEPSSATLRSIVEYFDYDSSEDGGGGVGEGKDKGNDGVAHGEAAHD 160

Query: 482 --------PWVPLGMQRGAAPWAH 529
                   P   LG +  +APW H
Sbjct: 161 RDEESRSQPTYLLGSRPVSAPWMH 184


>emb|CBI27903.3| unnamed protein product, partial [Vitis vinifera]
          Length = 881

 Score = 58.9 bits (141), Expect = 1e-06
 Identities = 25/43 (58%), Positives = 35/43 (81%)
 Frame = +2

Query: 251 KRKKKPRPSFYDQTIERWSLRISSPRSRFPWQEQPAAETRKKN 379
           K K+KPRPSF++Q  ++WSL+I+SPR +FPWQEQ A ET+  +
Sbjct: 97  KAKRKPRPSFFEQIRDKWSLKINSPREKFPWQEQ-AEETQNSS 138