BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00025254
         (510 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]               55   9e-06

>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score = 55.5 bits (132), Expect = 9e-06
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
 Frame = +3

Query: 3   NRSKYISGEFKIYLTDIDIEHQLSFSGRQEHNRIA*RMNRT--KCARSLRL*ANMSKDFG 176
           N  +Y+ GEF  +     I  Q + +   + N +A RMNRT  +  R++   A M+K F 
Sbjct: 551 NGGEYVDGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFW 610

Query: 177 TK*V--VCYLVNMSSSTTVDL*NSKEIWRSESMD 272
            + V   CY++N S STT+DL    E+W+ + +D
Sbjct: 611 AEAVKTACYVINRSPSTTIDLKTPMEMWKGKPVD 644