BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00023950
         (462 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020276297.1| RNA polymerase II transcription factor B sub...    78   3e-15
ref|XP_020276296.1| RNA polymerase II transcription factor B sub...    78   8e-15
ref|XP_010916569.2| PREDICTED: RNA polymerase II transcription f...    68   3e-10
ref|XP_022768207.1| RNA polymerase II transcription factor B sub...    65   9e-10
ref|XP_022768206.1| RNA polymerase II transcription factor B sub...    65   1e-09
ref|XP_022768205.1| RNA polymerase II transcription factor B sub...    65   1e-09
ref|XP_022768204.1| RNA polymerase II transcription factor B sub...    65   1e-09
ref|XP_002284465.2| PREDICTED: RNA polymerase II transcription f...    65   1e-09
ref|XP_022768203.1| RNA polymerase II transcription factor B sub...    65   1e-09
ref|XP_022768201.1| RNA polymerase II transcription factor B sub...    65   1e-09
ref|XP_020678108.1| RNA polymerase II transcription factor B sub...    65   2e-09
ref|XP_020678107.1| RNA polymerase II transcription factor B sub...    65   2e-09
ref|XP_010999373.1| PREDICTED: uncharacterized protein LOC105107...    65   2e-09
gb|ESR47414.1| hypothetical protein CICLE_v100020021mg, partial ...    63   2e-09
ref|XP_010999372.1| PREDICTED: general transcription factor IIH ...    65   2e-09
ref|XP_020578485.1| RNA polymerase II transcription factor B sub...    65   2e-09
ref|XP_010999370.1| PREDICTED: general transcription factor IIH ...    65   2e-09
ref|XP_020578476.1| RNA polymerase II transcription factor B sub...    65   2e-09
gb|PNT37223.1| hypothetical protein POPTR_005G176600v3 [Populus ...    64   3e-09
emb|CBI19033.3| unnamed protein product, partial [Vitis vinifera]      64   3e-09

>ref|XP_020276297.1| RNA polymerase II transcription factor B subunit 4-like isoform X2
           [Asparagus officinalis]
 gb|ONK65471.1| uncharacterized protein A4U43_C07F37450 [Asparagus officinalis]
          Length = 146

 Score = 77.8 bits (190), Expect = 3e-15
 Identities = 36/43 (83%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLYSDD+SLVVVLLD NPFFWG   +ISFAKFLNHVI
Sbjct: 1   MAPAPSKLYSDDVSLVVVLLDINPFFWGSTNSISFAKFLNHVI 43


>ref|XP_020276296.1| RNA polymerase II transcription factor B subunit 4-like isoform X1
           [Asparagus officinalis]
          Length = 191

 Score = 77.8 bits (190), Expect = 8e-15
 Identities = 36/43 (83%), Positives = 38/43 (88%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLYSDD+SLVVVLLD NPFFWG   +ISFAKFLNHVI
Sbjct: 1   MAPAPSKLYSDDVSLVVVLLDINPFFWGSTNSISFAKFLNHVI 43


>ref|XP_010916569.2| PREDICTED: RNA polymerase II transcription factor B subunit 4
           [Elaeis guineensis]
          Length = 486

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 35/52 (67%), Positives = 38/52 (73%), Gaps = 9/52 (17%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGG---------AAAISFAKFLNHVI 2
           M  APSKLY+DD+SLVVVLLDANPFFW G         AA + FAKFLNHVI
Sbjct: 1   MNSAPSKLYTDDVSLVVVLLDANPFFWAGGGGTSPHHPAATLPFAKFLNHVI 52


>ref|XP_022768207.1| RNA polymerase II transcription factor B subunit 4-like isoform X6
           [Durio zibethinus]
          Length = 268

 Score = 65.5 bits (158), Expect = 9e-10
 Identities = 29/43 (67%), Positives = 39/43 (90%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLY+DD+SLVVVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MAPAPSKLYADDVSLVVVLLDTNPFFW-SSSSLSFSQFLSHVL 42


>ref|XP_022768206.1| RNA polymerase II transcription factor B subunit 4-like isoform X5
           [Durio zibethinus]
          Length = 291

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 29/43 (67%), Positives = 39/43 (90%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLY+DD+SLVVVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MAPAPSKLYADDVSLVVVLLDTNPFFW-SSSSLSFSQFLSHVL 42


>ref|XP_022768205.1| RNA polymerase II transcription factor B subunit 4-like isoform X4
           [Durio zibethinus]
          Length = 291

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 29/43 (67%), Positives = 39/43 (90%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLY+DD+SLVVVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MAPAPSKLYADDVSLVVVLLDTNPFFW-SSSSLSFSQFLSHVL 42


>ref|XP_022768204.1| RNA polymerase II transcription factor B subunit 4-like isoform X3
           [Durio zibethinus]
          Length = 296

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 29/43 (67%), Positives = 39/43 (90%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLY+DD+SLVVVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MAPAPSKLYADDVSLVVVLLDTNPFFW-SSSSLSFSQFLSHVL 42


>ref|XP_002284465.2| PREDICTED: RNA polymerase II transcription factor B subunit 4
           [Vitis vinifera]
          Length = 303

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 29/44 (65%), Positives = 37/44 (84%)
 Frame = -3

Query: 133 IMIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           +M P PSKLYSDD+SL+VVLLD NPFFW   A++ F+KFL+HV+
Sbjct: 6   VMAPVPSKLYSDDVSLLVVLLDTNPFFW-STASLPFSKFLSHVL 48


>ref|XP_022768203.1| RNA polymerase II transcription factor B subunit 4-like isoform X2
           [Durio zibethinus]
          Length = 318

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 29/43 (67%), Positives = 39/43 (90%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLY+DD+SLVVVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MAPAPSKLYADDVSLVVVLLDTNPFFW-SSSSLSFSQFLSHVL 42


>ref|XP_022768201.1| RNA polymerase II transcription factor B subunit 4-like isoform X1
           [Durio zibethinus]
 ref|XP_022768202.1| RNA polymerase II transcription factor B subunit 4-like isoform X1
           [Durio zibethinus]
          Length = 323

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 29/43 (67%), Positives = 39/43 (90%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M PAPSKLY+DD+SLVVVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MAPAPSKLYADDVSLVVVLLDTNPFFW-SSSSLSFSQFLSHVL 42


>ref|XP_020678108.1| RNA polymerase II transcription factor B subunit 4 isoform X2
           [Dendrobium catenatum]
          Length = 297

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 35/51 (68%), Positives = 39/51 (76%), Gaps = 8/51 (15%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFW----GG----AAAISFAKFLNHVI 2
           M  APSKLYSDD+SLVVVLLDANPFFW    GG    AA + F+KFL+HVI
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDANPFFWAAGAGGGNHPAATLPFSKFLDHVI 51


>ref|XP_020678107.1| RNA polymerase II transcription factor B subunit 4 isoform X1
           [Dendrobium catenatum]
 gb|PKU85560.1| hypothetical protein MA16_Dca003300 [Dendrobium catenatum]
          Length = 302

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 35/51 (68%), Positives = 39/51 (76%), Gaps = 8/51 (15%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFW----GG----AAAISFAKFLNHVI 2
           M  APSKLYSDD+SLVVVLLDANPFFW    GG    AA + F+KFL+HVI
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDANPFFWAAGAGGGNHPAATLPFSKFLDHVI 51


>ref|XP_010999373.1| PREDICTED: uncharacterized protein LOC105107223 isoform X4 [Populus
           euphratica]
          Length = 273

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 27/43 (62%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M   PSKLYSDD+SL+VVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MTSVPSKLYSDDVSLLVVLLDTNPFFWTASSSLSFSQFLSHVL 43


>gb|ESR47414.1| hypothetical protein CICLE_v100020021mg, partial [Citrus
           clementina]
          Length = 174

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 29/43 (67%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M  APSKLYSDD+SLVVVLLD NPFFW  ++++SF++FL HV+
Sbjct: 1   MASAPSKLYSDDVSLVVVLLDTNPFFW-SSSSLSFSQFLTHVL 42


>ref|XP_010999372.1| PREDICTED: general transcription factor IIH subunit 3 isoform X3
           [Populus euphratica]
          Length = 295

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 27/43 (62%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M   PSKLYSDD+SL+VVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MTSVPSKLYSDDVSLLVVLLDTNPFFWTASSSLSFSQFLSHVL 43


>ref|XP_020578485.1| RNA polymerase II transcription factor B subunit 4 isoform X2
           [Phalaenopsis equestris]
          Length = 296

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 35/53 (66%), Positives = 39/53 (73%), Gaps = 10/53 (18%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFW------GG----AAAISFAKFLNHVI 2
           M  APSKLYSDD+SLV VLLD NPFFW      GG    AAA++FAKFL+HVI
Sbjct: 1   MASAPSKLYSDDVSLVAVLLDVNPFFWAASAGAGGGNHTAAALTFAKFLDHVI 53


>ref|XP_010999370.1| PREDICTED: general transcription factor IIH subunit 3 isoform X2
           [Populus euphratica]
 ref|XP_010999371.1| PREDICTED: general transcription factor IIH subunit 3 isoform X2
           [Populus euphratica]
          Length = 298

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 27/43 (62%), Positives = 37/43 (86%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M   PSKLYSDD+SL+VVLLD NPFFW  ++++SF++FL+HV+
Sbjct: 1   MTSVPSKLYSDDVSLLVVLLDTNPFFWTASSSLSFSQFLSHVL 43


>ref|XP_020578476.1| RNA polymerase II transcription factor B subunit 4 isoform X1
           [Phalaenopsis equestris]
          Length = 301

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 35/53 (66%), Positives = 39/53 (73%), Gaps = 10/53 (18%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFW------GG----AAAISFAKFLNHVI 2
           M  APSKLYSDD+SLV VLLD NPFFW      GG    AAA++FAKFL+HVI
Sbjct: 1   MASAPSKLYSDDVSLVAVLLDVNPFFWAASAGAGGGNHTAAALTFAKFLDHVI 53


>gb|PNT37223.1| hypothetical protein POPTR_005G176600v3 [Populus trichocarpa]
          Length = 275

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 28/43 (65%), Positives = 36/43 (83%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M   PSKLYSDD+SLVVVLLD NPFFW   +++SF++FL+HV+
Sbjct: 1   MTSVPSKLYSDDVSLVVVLLDTNPFFWTPPSSLSFSQFLSHVL 43


>emb|CBI19033.3| unnamed protein product, partial [Vitis vinifera]
          Length = 297

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = -3

Query: 130 MIPAPSKLYSDDISLVVVLLDANPFFWGGAAAISFAKFLNHVI 2
           M P PSKLYSDD+SL+VVLLD NPFFW   A++ F+KFL+HV+
Sbjct: 1   MAPVPSKLYSDDVSLLVVLLDTNPFFW-STASLPFSKFLSHVL 42