BLASTX nr result
ID: Ophiopogon24_contig00023267
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00023267
(546 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PNX67522.1| retrotransposon protein putative Ty1-copia sub-cl... 279 7e-93
gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-... 285 3e-91
emb|CAE05729.1| OSJNBb0017I01.9 [Oryza sativa Japonica Group] 282 1e-90
gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subc... 289 1e-90
gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-... 288 2e-90
gb|ABG66099.1| retrotransposon protein, putative, Ty1-copia subc... 282 1e-89
emb|CAE05247.2| OSJNBb0115I09.9 [Oryza sativa Japonica Group] 280 2e-89
gb|ABA96091.1| retrotransposon protein, putative, Ty1-copia subc... 281 6e-89
gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subc... 288 7e-89
gb|AAM94928.1| putative polyprotein [Oryza sativa Japonica Group] 281 7e-89
gb|KYP59836.1| Retrovirus-related Pol polyprotein from transposo... 271 8e-89
gb|ABA97460.1| retrotransposon protein, putative, Ty1-copia subc... 285 9e-89
gb|PPD96412.1| hypothetical protein GOBAR_DD06575 [Gossypium bar... 293 9e-89
gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subc... 289 2e-88
gb|AAP53009.2| retrotransposon protein, putative, Ty1-copia subc... 284 2e-88
gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 288 3e-88
emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group] 289 4e-88
gb|ASR75387.1| retrotransposon protein [Oryza barthii] 290 5e-88
emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group] 290 5e-88
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group] 290 5e-88
>gb|PNX67522.1| retrotransposon protein putative Ty1-copia sub-class, partial
[Trifolium pratense]
Length = 232
Score = 279 bits (713), Expect = 7e-93
Identities = 124/182 (68%), Positives = 153/182 (84%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW L DLPPGCKP+GCKWI KKKL+ DGT+DKYKARLVAKG+ Q++ ID+FDT+SPV
Sbjct: 7 NKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVDKYKARLVAKGFRQRENIDFFDTFSPVT 66
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
RI++IRVL+++ AI+ +V+HQMDVKTAFLNGDL+EEIYM QPEGF+ GQE KVCKL KS
Sbjct: 67 RITSIRVLISIVAIYNLVVHQMDVKTAFLNGDLEEEIYMEQPEGFVVHGQETKVCKLEKS 126
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFD ++V GF +NE DKC+Y + NN ++CLYVDD+LIFG+ L
Sbjct: 127 LYGLKQAPKQWHEKFDNLMVSNGFKLNESDKCIYYKSDNNICTMICLYVDDMLIFGSNLS 186
Query: 541 VI 546
+
Sbjct: 187 AV 188
>gb|AAX96353.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
gb|ABA91827.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 527
Score = 285 bits (728), Expect = 3e-91
Identities = 134/182 (73%), Positives = 156/182 (85%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 115 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 174
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKT FLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 175 RLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 234
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFD + GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 235 LYGLKQAPKQWHEKFDITLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLE 294
Query: 541 VI 546
VI
Sbjct: 295 VI 296
>emb|CAE05729.1| OSJNBb0017I01.9 [Oryza sativa Japonica Group]
Length = 478
Score = 282 bits (721), Expect = 1e-90
Identities = 132/182 (72%), Positives = 153/182 (84%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KY ARLVAKGYTQ++G D+FD YSPVA
Sbjct: 7 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYNARLVAKGYTQKEGEDFFDNYSPVA 66
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LA H + +HQMDVKT FLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 67 RLTTIRVLLSLAGSHGLFVHQMDVKTVFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 126
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 127 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHDGGEGVILCLYVDDILIFGTNLE 186
Query: 541 VI 546
VI
Sbjct: 187 VI 188
>gb|ABF97861.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 764
Score = 289 bits (740), Expect = 1e-90
Identities = 136/182 (74%), Positives = 158/182 (86%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 244 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 303
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 304 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 363
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 364 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLE 423
Query: 541 VI 546
VI
Sbjct: 424 VI 425
>gb|AAX92916.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 713
Score = 288 bits (736), Expect = 2e-90
Identities = 135/182 (74%), Positives = 157/182 (86%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 213 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 272
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 273 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 332
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GF VNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 333 LYGLKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLE 392
Query: 541 VI 546
VI
Sbjct: 393 VI 394
>gb|ABG66099.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 591
Score = 282 bits (722), Expect = 1e-89
Identities = 133/182 (73%), Positives = 156/182 (85%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 109 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 168
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDE+IYM+QP+ F+ +GQE KVCKL+KS
Sbjct: 169 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEKIYMDQPDAFVVEGQEGKVCKLLKS 228
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VI CLYVDDILIFGT L
Sbjct: 229 LYGLKQAPKQWHEKFDKTLTSAGFAVNEVDKCVYYRYGGGEGVIPCLYVDDILIFGTNLR 288
Query: 541 VI 546
VI
Sbjct: 289 VI 290
>emb|CAE05247.2| OSJNBb0115I09.9 [Oryza sativa Japonica Group]
Length = 517
Score = 280 bits (715), Expect = 2e-89
Identities = 131/182 (71%), Positives = 155/182 (85%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKP+GCKW+FKKKLR DGTI+KYKARL+AKGYTQ++G D+FDTYSPVA
Sbjct: 162 NGTWEVTERPYGCKPMGCKWVFKKKLRPDGTIEKYKARLIAKGYTQKEGGDFFDTYSPVA 221
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKT FLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 222 RLTTIRVLLSLAASHGLLVHQMDVKTTFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 281
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQA KQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIF T L
Sbjct: 282 LYGLKQASKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFETNLE 341
Query: 541 VI 546
VI
Sbjct: 342 VI 343
>gb|ABA96091.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 622
Score = 281 bits (720), Expect = 6e-89
Identities = 134/182 (73%), Positives = 157/182 (86%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 115 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 174
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLN +LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 175 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNRELDEEIYMDQPDGFVVEGQEGKVCKLLKS 234
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQ H+KFDK + GFAVNE DKCVY ++ VILCLYVDDILIFGT L
Sbjct: 235 LYGLKQAPKQCHEKFDKTLTSAGFAVNEADKCVYYRHGGDEGVILCLYVDDILIFGTNLE 294
Query: 541 VI 546
VI
Sbjct: 295 VI 296
>gb|ABA95219.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 909
Score = 288 bits (736), Expect = 7e-89
Identities = 135/182 (74%), Positives = 158/182 (86%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GC+PVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 499 NGTWEVTERPYGCEPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 558
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 559 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 618
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 619 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLE 678
Query: 541 VI 546
VI
Sbjct: 679 VI 680
>gb|AAM94928.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 619
Score = 281 bits (719), Expect = 7e-89
Identities = 131/182 (71%), Positives = 155/182 (85%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW + + P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 353 NGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 412
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLLALAA H +++HQMDVKTAFLNG+L+EEIYM+QP+G++ +GQE VCKL+KS
Sbjct: 413 RLTTIRVLLALAASHGLLVHQMDVKTAFLNGELEEEIYMDQPDGYVLEGQEGMVCKLLKS 472
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFD + GF VNE DKCVY + VILCLYVDDILIFGT+L
Sbjct: 473 LYGLKQAPKQWHEKFDTTLTSAGFVVNEADKCVYYRYGGGEVVILCLYVDDILIFGTSLN 532
Query: 541 VI 546
VI
Sbjct: 533 VI 534
>gb|KYP59836.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 290
Score = 271 bits (692), Expect = 8e-89
Identities = 122/177 (68%), Positives = 155/177 (87%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N+TW L DLP G KP+GCKWIFK+K DG+I+KYKARLVAKG+TQ++ ID+FDT++PVA
Sbjct: 59 NNTWTLVDLPKGAKPIGCKWIFKRKYNPDGSIEKYKARLVAKGFTQKQDIDFFDTFAPVA 118
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
RIS+IRVL+ALA+IH++VIHQMDVKTAFLNG+L+EEIYM QPEG GQE KVC+L+KS
Sbjct: 119 RISSIRVLIALASIHRLVIHQMDVKTAFLNGELEEEIYMTQPEGCEVPGQENKVCRLLKS 178
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGT 531
LYGLKQAPKQWH+KFD+V++ GF+ + D+CVY+ +++D VI+CLYVDD+LIFGT
Sbjct: 179 LYGLKQAPKQWHEKFDQVLLNDGFSSSSADRCVYTKCMDDDCVIICLYVDDMLIFGT 235
>gb|ABA97460.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 786
Score = 285 bits (729), Expect = 9e-89
Identities = 134/182 (73%), Positives = 156/182 (85%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 203 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 262
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TI VLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 263 RLTTIHVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 322
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIFG L
Sbjct: 323 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGINLE 382
Query: 541 VI 546
VI
Sbjct: 383 VI 384
>gb|PPD96412.1| hypothetical protein GOBAR_DD06575 [Gossypium barbadense]
Length = 1355
Score = 293 bits (749), Expect = 9e-89
Identities = 131/179 (73%), Positives = 158/179 (88%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TWIL DLPPG KP+GCKWIFKKK++ DGTIDK+KARLVAKG+TQ++GIDYFDTY+PVA
Sbjct: 873 NQTWILVDLPPGSKPIGCKWIFKKKMKVDGTIDKFKARLVAKGFTQRQGIDYFDTYAPVA 932
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
RI+TIR+L++L +I+ +V+HQMDVKTAFLNG+L+EE+YM QPEGF+ GQE KVCKLVKS
Sbjct: 933 RIATIRLLISLTSIYNLVVHQMDVKTAFLNGELEEEVYMEQPEGFVVPGQEHKVCKLVKS 992
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTL 537
LYGLKQAPKQWHQKFDKV++ G+ +NE DKC+YS N VI+CLYVDD+LIFGT L
Sbjct: 993 LYGLKQAPKQWHQKFDKVVLANGYKINESDKCIYSKFDNGKGVIICLYVDDMLIFGTDL 1051
>gb|ABA96419.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1095
Score = 289 bits (740), Expect = 2e-88
Identities = 136/182 (74%), Positives = 158/182 (86%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 613 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 672
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 673 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 732
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 733 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLE 792
Query: 541 VI 546
VI
Sbjct: 793 VI 794
>gb|AAP53009.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 784
Score = 284 bits (726), Expect = 2e-88
Identities = 133/182 (73%), Positives = 155/182 (85%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI KYKARLVAKGYTQ++G D+FDTYSP+A
Sbjct: 420 NGTWEVTERPCGCKPVGCKWVFKKKLRPDGTIKKYKARLVAKGYTQKEGEDFFDTYSPIA 479
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP GF+ +GQE KVCKL+KS
Sbjct: 480 GLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPNGFVVEGQEGKVCKLLKS 539
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDD+LIFGT L
Sbjct: 540 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDVLIFGTNLE 599
Query: 541 VI 546
VI
Sbjct: 600 VI 601
>gb|AAN64998.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gb|ABF95728.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1040
Score = 288 bits (737), Expect = 3e-88
Identities = 135/182 (74%), Positives = 159/182 (87%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 708 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 767
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 768 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 827
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + + VILCLYVDDILIFGT L
Sbjct: 828 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYLHGGVEGVILCLYVDDILIFGTNLE 887
Query: 541 VI 546
+I
Sbjct: 888 MI 889
>emb|CAE03994.1| OSJNBb0089B03.8 [Oryza sativa Japonica Group]
Length = 1113
Score = 289 bits (739), Expect = 4e-88
Identities = 136/182 (74%), Positives = 158/182 (86%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 613 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 672
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 673 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 732
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 733 LYGLKQAPKQWHEKFDKTLTSAGFAVNEVDKCVYYRHGGGEGVILCLYVDDILIFGTNLE 792
Query: 541 VI 546
VI
Sbjct: 793 VI 794
>gb|ASR75387.1| retrotransposon protein [Oryza barthii]
Length = 1200
Score = 290 bits (741), Expect = 5e-88
Identities = 136/182 (74%), Positives = 158/182 (86%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 700 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 759
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 760 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 819
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK + GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 820 LYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLD 879
Query: 541 VI 546
VI
Sbjct: 880 VI 881
>emb|CAD40198.2| OSJNBb0043H09.7 [Oryza sativa Japonica Group]
Length = 1302
Score = 290 bits (743), Expect = 5e-88
Identities = 136/182 (74%), Positives = 159/182 (87%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 820 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 879
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 880 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 939
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK ++ GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 940 LYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLE 999
Query: 541 VI 546
VI
Sbjct: 1000 VI 1001
>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
Length = 1320
Score = 290 bits (743), Expect = 5e-88
Identities = 136/182 (74%), Positives = 159/182 (87%)
Frame = +1
Query: 1 NHTWILTDLPPGCKPVGCKWIFKKKLRADGTIDKYKARLVAKGYTQQKGIDYFDTYSPVA 180
N TW +T+ P GCKPVGCKW+FKKKLR DGTI+KYKARLVAKGYTQ++G D+FDTYSPVA
Sbjct: 820 NGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVA 879
Query: 181 RISTIRVLLALAAIHKMVIHQMDVKTAFLNGDLDEEIYMNQPEGFIAKGQERKVCKLVKS 360
R++TIRVLL+LAA H +++HQMDVKTAFLNG+LDEEIYM+QP+GF+ +GQE KVCKL+KS
Sbjct: 880 RLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKS 939
Query: 361 LYGLKQAPKQWHQKFDKVIVQYGFAVNEHDKCVYSMAINNDYVILCLYVDDILIFGTTLG 540
LYGLKQAPKQWH+KFDK ++ GFAVNE DKCVY + VILCLYVDDILIFGT L
Sbjct: 940 LYGLKQAPKQWHEKFDKTLISAGFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLE 999
Query: 541 VI 546
VI
Sbjct: 1000 VI 1001