BLASTX nr result
ID: Ophiopogon24_contig00022896
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00022896
(976 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CDP17738.1| unnamed protein product [Coffea canephora] 244 7e-73
emb|CDP17739.1| unnamed protein product [Coffea canephora] 235 1e-70
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v... 236 8e-68
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo... 237 4e-67
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 193 2e-57
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 193 2e-57
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 182 1e-53
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group] 182 1e-53
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense] 198 1e-53
dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group] 177 7e-52
emb|CAJ86151.1| H0413E07.4 [Oryza sativa] 175 9e-52
emb|CAJ86192.1| H0306F03.15 [Oryza sativa] 175 9e-52
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 178 1e-51
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 175 1e-51
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group] 176 3e-51
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa] 176 3e-51
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 181 3e-51
gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein ... 181 4e-51
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 176 1e-50
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 176 1e-50
>emb|CDP17738.1| unnamed protein product [Coffea canephora]
Length = 798
Score = 244 bits (622), Expect(2) = 7e-73
Identities = 122/233 (52%), Positives = 163/233 (69%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDKTR-VKIDIVIHRPKGLLDVDVIHM 522
+G G SL+ L+++GL+ G CKLE CE+C L+K R VK IH KG+LD +H
Sbjct: 450 LGDAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDY--VHS 507
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
DVWGP+K SLGG +FV F+DD SR VW+ TM KDE+L++F KWK +E+QTGRKIK+
Sbjct: 508 DVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKI 567
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN + Y DPFQ++C I RHF + + +GV++ MN+TL+E VRC++ +
Sbjct: 568 LRTDNGGE--YKSDPFQKICQECGIVRHFIVRKIPQQ-NGVSEHMNKTLVEKVRCMLSNA 624
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL R FW +A+ YA HL+NRLPS+A GGKTPLE+WSG+ A+DY LRIF S A
Sbjct: 625 GLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTA 677
Score = 60.1 bits (144), Expect(2) = 7e-73
Identities = 37/97 (38%), Positives = 62/97 (63%), Gaps = 4/97 (4%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
+++R +DG R L VRY+P+ RSLIS+ LE +GL +RM D ++KVT L+++K
Sbjct: 353 IKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGILKVTSGALLMLKGVR 412
Query: 799 DSSSCFPRGSSV---RDVSTYSVTPVDTDSTRL*HLR 698
++ + +GS+V V+T S + D ++T+L H+R
Sbjct: 413 KNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMR 449
>emb|CDP17739.1| unnamed protein product [Coffea canephora]
Length = 435
Score = 235 bits (599), Expect = 1e-70
Identities = 119/233 (51%), Positives = 160/233 (68%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDKTR-VKIDIVIHRPKGLLDVDVIHM 522
+GH G SL+ L+++GL+ G CKLE CE+C L+K R VK IH KG+LD +H
Sbjct: 58 LGHAGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDY--VHS 115
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
+VWGP+K SLGG +FV F+DD SR VW+ TM KDEVLE+F KWK +E+QTGRKIK+
Sbjct: 116 NVWGPAKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKI 175
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN +Y DPFQ++ I +HF +T + +GV++ MN+TL+E V C++ +
Sbjct: 176 LRTDNGG--EYKSDPFQKIGQECGIVQHFTVRKTP-QQNGVSERMNKTLVEKVHCMLSNA 232
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
L R FW + + YA HL+NRLPS+A GGKTPLE+WSG+ +DY LRIF S A
Sbjct: 233 RLGRKFWAETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYDSLRIFYSTA 285
>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
Length = 813
Score = 236 bits (602), Expect = 8e-68
Identities = 120/233 (51%), Positives = 158/233 (67%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDKTR-VKIDIVIHRPKGLLDVDVIHM 522
+GH G SL+ L+++GL+ G CKLE CE+C L K R VK IH KG+LD +H
Sbjct: 364 LGHAGEKSLQILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDY--VHS 421
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
DVWGP+K S+GG +FV FVDD SR VW+ TM K++VLE+F KWK +E+ TGRKIKV
Sbjct: 422 DVWGPAKTPSIGGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKV 481
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
LQ DN +Y DPF +C I RHF +T + +GV++ MN+TL+E V C++ +
Sbjct: 482 LQTDNGG--EYKSDPFLNVCQDCGIVRHFTVRKTP-QQNGVSERMNKTLVEKVCCMLSNA 538
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
L R FW +A+ YA HL+NRLPS+A GKTPLE+WSG+ A+DY L +FGS A
Sbjct: 539 ELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYDSLHVFGSIA 591
>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 1032
Score = 237 bits (604), Expect = 4e-67
Identities = 121/233 (51%), Positives = 156/233 (66%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH G SL L ++GL+ CKL+ CE+C K TRVK IH KG+LD +H
Sbjct: 213 LGHAGERSLNLLMKQGLLKNIQACKLDFCEHCVKGKKTRVKFGTAIHDTKGILDY--VHS 270
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
DVWGPSK ASL G ++V FVDD SR +W+ M KDEVL +F KWKK +E+QTGRKIK
Sbjct: 271 DVWGPSKTASLAGNHYYVTFVDDFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKH 330
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
+ DN + Y+ DPF++ C I RHF + T + +GVA+ MNRTLLE VRC++ +
Sbjct: 331 FRTDNGGE--YTSDPFKKACEESGIVRHFTVKHTPQQ-NGVAERMNRTLLEKVRCMLSNA 387
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW +A++YA HLINRLPS+A GGKTPLE W G+ A+DY L +FG A
Sbjct: 388 GLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKPATDYDSLHVFGCTA 440
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 193 bits (490), Expect(2) = 2e-57
Identities = 109/233 (46%), Positives = 139/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+ G T KL CE+C K TRVK IH+ KG VD H
Sbjct: 926 LGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGT--VDYFHS 983
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGPS S GGYR+ + F+DD SR VW+ + K EVL FK++K IE+QTG+KIK
Sbjct: 984 DLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKR 1043
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
+ DN ++ F E C + I RH T + +GVA+ MNRTLLE RC+ +
Sbjct: 1044 FRTDNGL--EFCSGEFNEFCKNEGIVRHRTVRRTP-QQNGVAERMNRTLLERARCMRSNA 1100
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL FW +A+ AC+L+NR PS A KTP E+WSG A DY LR+FG PA
Sbjct: 1101 GLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSPA-DYSGLRVFGCPA 1152
Score = 59.3 bits (142), Expect(2) = 2e-57
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPS-ARSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
VR++M+DG+VR L VR++P ++LIS+ L+ +G R V+KV L VI+ N
Sbjct: 831 VRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNL 890
Query: 799 DSSSCFPRGSSVRDVSTYSVT-PVDTDSTRL*HLR 698
+ F GSSV V+ S + +D+D+T+L H+R
Sbjct: 891 ERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMR 925
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 193 bits (490), Expect(2) = 2e-57
Identities = 109/233 (46%), Positives = 139/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+ G T KL CE+C K TRVK IH+ KG VD H
Sbjct: 947 LGHMSERGLSVLSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGT--VDYFHS 1004
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGPS S GGYR+ + F+DD SR VW+ + K EVL FK++K IE+QTG+KIK
Sbjct: 1005 DLWGPSPTISKGGYRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKR 1064
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
+ DN ++ F E C + I RH T + +GVA+ MNRTLLE RC+ +
Sbjct: 1065 FRTDNGL--EFCSGEFNEFCKNEGIVRHRTVRRTP-QQNGVAERMNRTLLERARCMRSNA 1121
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL FW +A+ AC+L+NR PS A KTP E+WSG A DY LR+FG PA
Sbjct: 1122 GLGEEFWAEAVNTACYLVNRSPSTAIELKTPEEVWSGSPA-DYSGLRVFGCPA 1173
Score = 59.3 bits (142), Expect(2) = 2e-57
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPS-ARSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
VR++M+DG+VR L VR++P ++LIS+ L+ +G R V+KV L VI+ N
Sbjct: 852 VRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVLKVFSGALTVIRGNL 911
Query: 799 DSSSCFPRGSSVRDVSTYSVT-PVDTDSTRL*HLR 698
+ F GSSV V+ S + +D+D+T+L H+R
Sbjct: 912 ERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMR 946
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 2340
Score = 182 bits (462), Expect(2) = 1e-53
Identities = 98/233 (42%), Positives = 140/233 (60%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 647 LGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 704
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + VDD SR VW + K + +VFK+WK +E QT RK+K+
Sbjct: 705 DLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 764
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ T + +GVA+ MNRT++ RCL+ +
Sbjct: 765 LRTDNGM--EFCSKIFKSYCKSEGIVRHYTVPHTP-QQNGVAERMNRTIISKARCLLSNA 821
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW +A+ AC+LINR PS A KTP+E+WSG A +Y LR+FG A
Sbjct: 822 GLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTA 873
Score = 57.8 bits (138), Expect(2) = 1e-53
Identities = 35/96 (36%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG +R L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 551 VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADI 610
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + RG+++ +V+ S + ++D+T L H+R
Sbjct: 611 KSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 646
>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
Length = 1601
Score = 182 bits (462), Expect(2) = 1e-53
Identities = 98/233 (42%), Positives = 140/233 (60%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 440 LGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 497
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + VDD SR VW + K + +VFK+WK +E QT RK+K+
Sbjct: 498 DLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 557
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ T + +GVA+ MNRT++ RCL+ +
Sbjct: 558 LRTDNGM--EFCSKIFKSYCKSEGIVRHYTVPHTP-QQNGVAERMNRTIISKARCLLSNA 614
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW +A+ AC+LINR PS A KTP+E+WSG A +Y LR+FG A
Sbjct: 615 GLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTA 666
Score = 57.8 bits (138), Expect(2) = 1e-53
Identities = 35/96 (36%), Positives = 65/96 (67%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG +R L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 344 VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADI 403
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + RG+++ +V+ S + ++D+T L H+R
Sbjct: 404 KSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 439
>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
Length = 876
Score = 198 bits (503), Expect = 1e-53
Identities = 102/232 (43%), Positives = 147/232 (63%), Gaps = 1/232 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDKT-RVKIDIVIHRPKGLLDVDVIHM 522
+GH + L +R L+ G +CK++ C+YC L K RV+ + H+ +G+LD +H
Sbjct: 348 LGHLSERGMMELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRFKPMKHKTEGILDY--VHS 405
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
DVWGP++ AS+GG R+FV F DD SR +W+ M +K EV FK WK +E+QTGRKIK
Sbjct: 406 DVWGPTREASMGGSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRKIKY 465
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN + +Y+ F++ C + IQRHF +T + +GVA+ MN +L E RCL L++
Sbjct: 466 LRSDNGT--EYTNSQFEKFCEQHGIQRHFSVRKTP-QQNGVAERMNMSLTERARCLQLKA 522
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSP 6
GLS+ FW + + AC+LINR P A+ GK E+W+G+ D LRIFG P
Sbjct: 523 GLSKGFWAETINMACYLINRSPRASLEGKVAEEVWTGKPI-DLDNLRIFGCP 573
>dbj|BAH90873.1| Os01g0116166 [Oryza sativa Japonica Group]
Length = 778
Score = 177 bits (448), Expect(2) = 7e-52
Identities = 95/233 (40%), Positives = 139/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+ G KL+ CE+C K RVK + H +G+LD +H
Sbjct: 406 LGHMSEIGLAELSKRGLLYGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 463
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + VDD SR VW + K + +VFK+WK +E QT RK+K+
Sbjct: 464 DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 523
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ T + +GVA+ MNRT++ RC++ +
Sbjct: 524 LRTDNGM--EFCSKIFKSYCKSEGIVRHYTIPHTP-QQNGVAERMNRTIISKARCMLSNA 580
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW +A+ AC+LINR PS A KTP+E+WSG + +Y LR+FG A
Sbjct: 581 GLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSG-SPVNYSDLRVFGCTA 632
Score = 57.0 bits (136), Expect(2) = 7e-52
Identities = 35/96 (36%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG +R L VR++P+ RSLIS L+ +G + D ++KVTK +LVV+K +
Sbjct: 310 VQIKMFDGCIRTLSDVRHIPNLKRSLISFCTLDRKGYKYSGGDGILKVTKGSLVVMKADI 369
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + RG+++ +V+ S + ++D+T L H+R
Sbjct: 370 KSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 405
>emb|CAJ86151.1| H0413E07.4 [Oryza sativa]
Length = 1205
Score = 175 bits (443), Expect(2) = 9e-52
Identities = 93/233 (39%), Positives = 137/233 (58%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 425 LGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 482
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + V+D SR VW + K + VFK+WK +E QT RK+K+
Sbjct: 483 DLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 542
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ T + +GVA+ MNRT++ RC++ +
Sbjct: 543 LRTDNGM--EFCSKIFKSYCKSEGIMRHYTVPHTP-QQNGVAERMNRTIISKARCMLSNA 599
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW +A+ AC+LINR P A KTP+++WSG A +Y L++FG A
Sbjct: 600 GLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTA 651
Score = 58.5 bits (140), Expect(2) = 9e-52
Identities = 35/96 (36%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG +R L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 329 VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADI 388
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + +G+++ +V+T S + ++D+T L H+R
Sbjct: 389 KSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMR 424
>emb|CAJ86192.1| H0306F03.15 [Oryza sativa]
Length = 1037
Score = 175 bits (443), Expect(2) = 9e-52
Identities = 93/233 (39%), Positives = 137/233 (58%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 257 LGHMSEIGLAELSMRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 314
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + V+D SR VW + K + VFK+WK +E QT RK+K+
Sbjct: 315 DLWGPARKTSFGGARYMMTIVNDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 374
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ T + +GVA+ MNRT++ RC++ +
Sbjct: 375 LRTDNGM--EFCSKIFKSYCKSEGIMRHYTVPHTP-QQNGVAERMNRTIISKARCMLSNA 431
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW +A+ AC+LINR P A KTP+++WSG A +Y L++FG A
Sbjct: 432 GLPKQFWAEAVSTACYLINRSPGYAIDKKTPIKVWSGSPA-NYSDLKVFGCTA 483
Score = 58.5 bits (140), Expect(2) = 9e-52
Identities = 35/96 (36%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG +R L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 161 VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDCKGYKYSGGDGILKVTKGSLVVMKADI 220
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + +G+++ +V+T S + ++D+T L H+R
Sbjct: 221 KSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMR 256
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 178 bits (452), Expect(2) = 1e-51
Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 349 LGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 406
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + VDD SR VW + K + +VFK+WK +E QT RK+K+
Sbjct: 407 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 466
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN + F+ C + I RH+ T + +GVA+ MNRT++ RC++ +
Sbjct: 467 LRTDNGM--ELCSKIFKSYCKSEGIVRHYTVPHTP-QQNGVAERMNRTIISKARCMLSNA 523
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
L + FW +A+ AC+LINR PS A KTP+E+WSG A +Y LR+FG A
Sbjct: 524 SLPKQFWAEAVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTA 575
Score = 54.7 bits (130), Expect(2) = 1e-51
Identities = 34/96 (35%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG +R L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 253 VQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADI 312
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
++ + RG+++ +V+ S + ++D+T L H+R
Sbjct: 313 KYANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 348
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 175 bits (443), Expect(2) = 1e-51
Identities = 95/233 (40%), Positives = 138/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 440 LGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 497
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + VDD SR VW + K + VFK+WK +E QT RK+K+
Sbjct: 498 DLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFNVFKEWKTMVERQTERKVKI 557
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ T + +GVA+ MNR ++ RC++ +
Sbjct: 558 LRTDNGM--EFCSKIFKSYCKSEGIVRHYTVPHTP-QQNGVAERMNRIIISKARCMLSNA 614
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW +A+ AC+LINR PS A KTP+E+WSG A +Y L++FG A
Sbjct: 615 GLPKQFWAEAVSTACYLINRSPSYA-NKKTPIEVWSGSPA-NYSDLKVFGCTA 665
Score = 58.2 bits (139), Expect(2) = 1e-51
Identities = 35/96 (36%), Positives = 66/96 (68%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG +R L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 344 VQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASI 403
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + +G+++ +V+T S + ++D+T L H+R
Sbjct: 404 KSANLYHLQGTTILGNVATVSDSLSNSDATNLWHMR 439
>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
Length = 944
Score = 176 bits (447), Expect(2) = 3e-51
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 272 LGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 329
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + VDD SR VW + K + +VFK+WK +E QT RK+K+
Sbjct: 330 DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ ++ +GVA+ MNRT++ RC++ +
Sbjct: 390 LRTDNGM--EFCSKIFKSYCKSEGIVRHYTPQQ-----NGVAERMNRTIISKARCMLSNA 442
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW A+ C+LINR PS A KTP+++WSG A +Y LR+FG A
Sbjct: 443 GLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPA-NYSDLRVFGCTA 494
Score = 55.5 bits (132), Expect(2) = 3e-51
Identities = 34/96 (35%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG + L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 176 VQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADI 235
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + RG+++ +V+ S + ++D+T L H+R
Sbjct: 236 KSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 271
>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
Length = 944
Score = 176 bits (447), Expect(2) = 3e-51
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH L LS+RGL+DG KL+ CE+C K RVK + H +G+LD +H
Sbjct: 272 LGHMSEIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDY--VHS 329
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGP++ S GG R+ + VDD SR VW + K + +VFK+WK +E QT RK+K+
Sbjct: 330 DLWGPARKTSFGGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKI 389
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ F+ C + I RH+ ++ +GVA+ MNRT++ RC++ +
Sbjct: 390 LRTDNGM--EFCSKIFKSYCKSEGIVRHYTPQQ-----NGVAERMNRTIISKARCMLSNA 442
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
GL + FW A+ C+LINR PS A KTP+++WSG A +Y LR+FG A
Sbjct: 443 GLPKQFWAAAVSTTCYLINRSPSYAIDKKTPIKVWSGFPA-NYSDLRVFGCTA 494
Score = 55.5 bits (132), Expect(2) = 3e-51
Identities = 34/96 (35%), Positives = 64/96 (66%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++M+DG + L VR++P+ RSLIS+ L+ +G + D ++KVTK +LVV+K +
Sbjct: 176 VQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADI 235
Query: 799 DSSSCFP-RGSSV-RDVSTYSVTPVDTDSTRL*HLR 698
S++ + RG+++ +V+ S + ++D+T L H+R
Sbjct: 236 KSANLYHLRGTTILGNVAAVSDSLSNSDATNLWHMR 271
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 181 bits (459), Expect(2) = 3e-51
Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH + L +R L+DG ++ CE C K RVK + +HR KG+LD +H
Sbjct: 433 LGHMSELGMAELMKRNLLDGCTQGNMKFCERCVFGKHKRVKFNTSVHRTKGILDY--VHA 490
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGPS+ SLGG R+ + +DD SR VW + KD+ FK+WK IE QT +++KV
Sbjct: 491 DLWGPSRKPSLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVMIERQTEKEVKV 550
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DNA ++ D F + C ++ I RH T + +GVA+ MNRT++ RC++ +
Sbjct: 551 LRTDNAG--EFCSDAFDDYCRKEGIVRHHTIPYTP-QQNGVAERMNRTIISKARCMLSNA 607
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
+++ FW +A AC+LINR PS KTP+EIWSG A DY LR+FG A
Sbjct: 608 RMNKRFWAEAANTACYLINRSPSIPLNKKTPIEIWSGMPA-DYSQLRVFGCTA 659
Score = 50.4 bits (119), Expect(2) = 3e-51
Identities = 33/96 (34%), Positives = 60/96 (62%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPS-ARSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++ +DG+ R L VR++P AR+LIS+ L+ EG + V+KV+K +LV + +
Sbjct: 337 VQIKTHDGITRTLKDVRHIPGMARNLISLSTLDAEGYKYSGSGGVVKVSKGSLVYMIGDM 396
Query: 799 DSSSCFP-RGSSVR-DVSTYSVTPVDTDSTRL*HLR 698
+S++ + RGS++ V+ +VT + + T L H+R
Sbjct: 397 NSANLYVLRGSTLHGSVTAAAVTKDEPNKTNLWHMR 432
>gb|AAK52561.1|AC079853_14 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]
gb|ABF96427.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1326
Score = 181 bits (460), Expect(2) = 4e-51
Identities = 95/233 (40%), Positives = 139/233 (59%), Gaps = 1/233 (0%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDK-TRVKIDIVIHRPKGLLDVDVIHM 522
+GH + L +R L+DG K++ CE+C K RVK + +HR KG+LD +H
Sbjct: 433 LGHMSELGMAELMKRNLLDGCTQGKMKFCEHCVFGKHKRVKFNTSVHRTKGILDY--VHT 490
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGPS+ A LGG R+ + +DD SR VW + KD+ FK+WK IE QT +++KV
Sbjct: 491 DLWGPSRKAYLGGARYMLTIIDDYSRKVWPYFLKHKDDTFAAFKEWKVRIERQTEKEVKV 550
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGRLDGVAKMMNRTLLEMVRCLMLQS 162
L+ DN ++ D F + C ++ I RH T + +GVA+ MNRT++ RC++ +
Sbjct: 551 LRTDNGG--EFCSDAFDDYCRKEGIVRHHTIPYTP-QQNGVAERMNRTIISKARCMLSNA 607
Query: 161 GLSRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
+++ FW +A AC+LINR PS KTP+E+WSG A DY LR+FG A
Sbjct: 608 RMNKRFWAEAANTACYLINRSPSIPLNKKTPIEVWSGMPA-DYSQLRVFGCTA 659
Score = 49.7 bits (117), Expect(2) = 4e-51
Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPS-ARSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
V+++ +DGM R L VR++P AR+LIS+ L+ EG + V+KV+K +LV + +
Sbjct: 337 VQIKTHDGMTRTLKDVRHIPGMARNLISLSTLDAEGYKYSSSGGVVKVSKGSLVYMIGDM 396
Query: 799 DSSSCFP-RGSSVR-DVSTYSVTPVDTDSTRL*HLR 698
+S++ + RGS++ V+ +V+ + T L H+R
Sbjct: 397 NSANLYVLRGSTLHGSVTAAAVSKDEPIKTNLWHMR 432
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 1032
Score = 176 bits (447), Expect(2) = 1e-50
Identities = 101/237 (42%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDKT-RVKIDIVIHRPKGLLDVDVIHM 522
+GH + LS++GL+ KLE CE+C K RV HR KG LD IH
Sbjct: 129 LGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDY--IHS 186
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGPSK S GG R+ + +DD SR VW+ + K+E FKKWK +E+QTG+K+K
Sbjct: 187 DLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKK 246
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGR--LDGVAKMMNRTLLEMVRCLML 168
L+ DN ++ E F E C I RH + G+ +GVA+ +NRT+LE RC++
Sbjct: 247 LRTDNGL--EFCEGDFNEFCANHGIARH---KTIPGKPQQNGVAERLNRTILERARCMLS 301
Query: 167 QSGL--SRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
+GL R W +A AC+LINR P ++ K P EIWSG DY LRIFG PA
Sbjct: 302 NAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPI-DYSNLRIFGCPA 357
Score = 53.5 bits (127), Expect(2) = 1e-50
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
++++ +DG ++ L VR++P R+LIS+ LE G + V+KV+K +V++K N
Sbjct: 35 IQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANR 94
Query: 799 DSSSCFPRGSSVRDVSTYSVTPVDTDSTRL*HLR 698
S +GS V + S + D D+T+L H+R
Sbjct: 95 IGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMR 128
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 690
Score = 176 bits (447), Expect(2) = 1e-50
Identities = 101/237 (42%), Positives = 134/237 (56%), Gaps = 5/237 (2%)
Frame = -3
Query: 698 VGHTGIGSLRALSRRGLIDGALTCKLESCEYCDLDKT-RVKIDIVIHRPKGLLDVDVIHM 522
+GH + LS++GL+ KLE CE+C K RV HR KG LD IH
Sbjct: 425 LGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDY--IHS 482
Query: 521 DVWGPSKHASLGGYRWFVFFVDDCSRHVWIATMSRKDEVLEVFKKWKKCIESQTGRKIKV 342
D+WGPSK S GG R+ + +DD SR VW+ + K+E FKKWK +E+QTG+K+K
Sbjct: 483 DLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKK 542
Query: 341 LQFDNASKEKYSEDPFQELCFRDSIQRHFFGEETSGR--LDGVAKMMNRTLLEMVRCLML 168
L+ DN ++ E F E C I RH + G+ +GVA+ +NRT+LE RC++
Sbjct: 543 LRTDNGL--EFCEGDFNEFCANHGIARH---KTIPGKPQQNGVAERLNRTILERARCMLS 597
Query: 167 QSGL--SRPFWTDALLYACHLINRLPSAACGGKTPLEIWSGRAASDYGLLRIFGSPA 3
+GL R W +A AC+LINR P ++ K P EIWSG DY LRIFG PA
Sbjct: 598 NAGLWHQRELWVEAASTACYLINRSPHSSLNFKIPEEIWSGNPI-DYSNLRIFGCPA 653
Score = 53.5 bits (127), Expect(2) = 1e-50
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Frame = -1
Query: 976 VRVRMYDGMVRELHGVRYMPSA-RSLISVRALEFEGLRMRMYDDVIKVTKRTLVVIKINC 800
++++ +DG ++ L VR++P R+LIS+ LE G + V+KV+K +V++K N
Sbjct: 331 IQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVLKVSKGAIVLLKANR 390
Query: 799 DSSSCFPRGSSVRDVSTYSVTPVDTDSTRL*HLR 698
S +GS V + S + D D+T+L H+R
Sbjct: 391 IGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMR 424