BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00022649
         (789 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ATL76535.1| RNA polymerase beta subunit (plastid) [Chenopodiu...    68   3e-09
gb|ATI24745.1| RNA polymerase beta (plastid) [Plukenetia volubilis]    60   2e-06

>gb|ATL76535.1| RNA polymerase beta subunit (plastid) [Chenopodium album]
          Length = 971

 Score = 68.2 bits (165), Expect = 3e-09
 Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
 Frame = +3

Query: 93  GCPRL*HVSWKE*HEAQNYGCVQYSK*KGS*SMVDPVTDKWELLVIPREKK----IFRGI 260
           G P L HVS +E HEAQNYGC+QYS+ KG  +MVD +T K + LV+PR+KK     F GI
Sbjct: 165 GMPWL-HVSGEE-HEAQNYGCIQYSQKKG--NMVDFMTKKSKFLVVPRKKKEVFFCFCGI 220

Query: 261 SHSISFRERFRSSKQ 305
           +HS SFR++  S KQ
Sbjct: 221 NHSFSFRKKLCSCKQ 235


>gb|ATI24745.1| RNA polymerase beta (plastid) [Plukenetia volubilis]
          Length = 941

 Score = 59.7 bits (143), Expect = 2e-06
 Identities = 87/269 (32%), Positives = 106/269 (39%), Gaps = 22/269 (8%)
 Frame = +1

Query: 49  YRFRLINCHP-IQSDWDAPDSDMCLGRSNMKLRIMGVFNTLNERGVDPWSIP*QINGNC* 225
           Y F ++ C   I   +  P SDM   RSNMKLRIMGVFNT   +    WS+   +     
Sbjct: 160 YDFTVLECKTVIPFIFGCPGSDMSRERSNMKLRIMGVFNT--PKSKRNWSMVDAV----- 212

Query: 226 LYLVKKRFFVELAIPFLLEKDSVQASK*GMVTEVYLSHICFKGHHDITVE--------VS 381
               KK  F  L +P   E      SK      +Y S+    G+  + +         ++
Sbjct: 213 ---TKKSEF--LVVP--RENRLYFYSKNRKKLCLYSSNQICHGYRSLYIAYRLSSHRGIT 265

Query: 382 RDLKDRMEQNNI*TSKSLTSPKVFXXXXXXXXXXXXKGSRLLKNFTFQFCXXXXXXXXXX 561
                 +E     T+KSL + KV             KGSRLLKNF               
Sbjct: 266 EFETSEIESKETSTNKSLMNSKVL-------GISHSKGSRLLKNFISVVIVKIDSVVIIE 318

Query: 562 XXXXXXXXXGP--------CW-KLE*GVVLCRVFLF-FLSNKVKK*RTPFL-ILCNYLSR 708
                               W  L  G +    F F FLS    +   PFL I  NYLSR
Sbjct: 319 SRIQKLSKKKNGRMNWSELAWGSLFIGNLSKESFFFGFLSILQFESGNPFLSIWYNYLSR 378

Query: 709 MRGNPHVRFLRGES--NINLSPFFFC*AH 789
           MRGN HVRF RGE      LS FFFC AH
Sbjct: 379 MRGNFHVRFGRGEILWYRILSQFFFCWAH 407