BLASTX nr result
ID: Ophiopogon24_contig00021567
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00021567
(1920 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_018859518.1| PREDICTED: rust resistance kinase Lr10-like ... 285 4e-85
gb|OMO89784.1| Integrase, catalytic core [Corchorus capsularis] 292 5e-83
gb|PRQ57405.1| putative RNA-directed DNA polymerase [Rosa chinen... 271 2e-82
gb|PRQ16309.1| putative RNA-directed DNA polymerase [Rosa chinen... 269 1e-79
ref|XP_018717930.1| PREDICTED: uncharacterized protein LOC108955... 275 1e-78
emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera] 281 5e-78
gb|PKI44367.1| hypothetical protein CRG98_035241, partial [Punic... 268 1e-77
gb|PKU67366.1| Retrovirus-related Pol polyprotein from transposo... 273 3e-77
gb|PKU84334.1| putative mitochondrial protein [Dendrobium catena... 264 4e-77
gb|PRQ17908.1| putative RNA-directed DNA polymerase [Rosa chinen... 271 1e-76
gb|PKI78797.1| hypothetical protein CRG98_000864 [Punica granatum] 261 2e-76
gb|PRQ31173.1| putative RNA-directed DNA polymerase [Rosa chinen... 276 3e-76
gb|PKU67943.1| Retrovirus-related Pol polyprotein from transposo... 268 7e-76
gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 proteas... 275 8e-76
gb|PKU80388.1| Retrovirus-related Pol polyprotein from transposo... 274 1e-75
gb|PKU71144.1| Retrovirus-related Pol polyprotein from transposo... 273 2e-75
gb|PKU86178.1| Retrovirus-related Pol polyprotein from transposo... 270 3e-75
gb|PKA48247.1| Retrovirus-related Pol polyprotein from transposo... 250 3e-75
gb|PKU78515.1| Retrovirus-related Pol polyprotein from transposo... 271 3e-75
ref|XP_019231431.1| PREDICTED: uncharacterized protein LOC109212... 260 4e-75
>ref|XP_018859518.1| PREDICTED: rust resistance kinase Lr10-like [Juglans regia]
Length = 521
Score = 285 bits (730), Expect = 4e-85
Identities = 131/206 (63%), Positives = 162/206 (78%)
Frame = -1
Query: 663 MITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQATTDPHWRQAMTEEFDAL 484
MITR+ DGTRRPK+ F+TRHP+P+ L P+EP T++QA DP+W QAM E DAL
Sbjct: 1 MITRTQDGTRRPKIFFSTRHPVPVCFAVDLATTPLEPKTFRQAEHDPNWHQAMQSEIDAL 60
Query: 483 QRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAKGFNQREGFDFEETFSP 304
N TW+LVP +P MN+V KWV+K+K +ADGS+ERYKARLVA+GF+Q G D++ETFSP
Sbjct: 61 HENKTWSLVPPSPDMNLVTSKWVFKVKTKADGSVERYKARLVARGFSQLHGLDYDETFSP 120
Query: 303 VVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQQPPGFIDPTRPTHVCHLH 124
VV+ T+RLIL LALS+ WP++QLDV NAFLHG+L E VYL QP GF+DP P +VC LH
Sbjct: 121 VVRPATIRLILHLALSQGWPLKQLDVSNAFLHGELQETVYLTQPQGFVDPQYPEYVCKLH 180
Query: 123 KALYGLRQAPRAWYTRFTNFLLQLGF 46
KALYGL+QAPRA Y +F+N LLQLGF
Sbjct: 181 KALYGLKQAPRACYLKFSNSLLQLGF 206
>gb|OMO89784.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1048
Score = 292 bits (747), Expect = 5e-83
Identities = 138/233 (59%), Positives = 179/233 (76%)
Frame = -1
Query: 711 AAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQAT 532
+ P D +P STS H M+TR G R+PK L T+HP+P +STL+ EP+ + QA+
Sbjct: 761 STPPDSDPPPSTSLHPMMTRLKVGIRKPKALCTTKHPLPACYSSTLEHSSSEPTCFSQAS 820
Query: 531 TDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAK 352
DP WRQAM +EF+AL RN TW LVP + N+VG KWVY++K+++DGSIERYKARLVAK
Sbjct: 821 KDPRWRQAMQDEFNALLRNNTWVLVPPSTPQNIVGSKWVYRIKYKSDGSIERYKARLVAK 880
Query: 351 GFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQQP 172
GF+Q+ G D++ETFSPVVK+ T+RL+LSLA S + ++QLDVKNAFLHG+LNE VY+QQP
Sbjct: 881 GFHQQLGLDYDETFSPVVKAPTIRLVLSLACSYNLDLQQLDVKNAFLHGNLNEDVYMQQP 940
Query: 171 PGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFM 13
GF+DPTRP HVC L KA+YGL+QAPRAW+ RF++ LL+ GF D+SLF+
Sbjct: 941 QGFVDPTRPGHVCRLQKAIYGLKQAPRAWFKRFSSVLLEHGFRMSQADSSLFI 993
Score = 217 bits (553), Expect = 2e-56
Identities = 106/226 (46%), Positives = 142/226 (62%), Gaps = 1/226 (0%)
Frame = -1
Query: 1707 SRFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGII 1528
SRF W +PL KS+ S F F ++ N + R+K +Q+D GGEY + GI
Sbjct: 480 SRFGWLYPLHCKSDALSCFSHFKRMVENALSARIKILQSDGGGEYTGKLFSILLDSNGIT 539
Query: 1527 QLFSCPGTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXX 1348
SCP TP+QNG+AERKHRHVVE GL LL+ SSLP FW AF T++YLIN
Sbjct: 540 HQLSCPHTPQQNGVAERKHRHVVEKGLYLLSQSSLPSKFWVEAFQTSLYLINRLPTPVLG 599
Query: 1347 XXXPFETVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMD 1168
P+ +FG+ P Y HLR FGCAC+P L P+ + KL +K+ +CVF+GY QHKGY+C+D
Sbjct: 600 GKRPYVVLFGKPPVYDHLRTFGCACYPHLVPYNKTKLEFKTRQCVFLGYGVQHKGYKCLD 659
Query: 1167 PSSGKIYILRHVSFDESSFPFA-RKSQEPFSNASSVFRMQSFPDQT 1033
P S +IYI R+V+FDE+ FPFA +K + + + + FP +T
Sbjct: 660 PQSRRIYISRNVAFDENLFPFAGQKKASVTTTHTPIILLWLFPSET 705
>gb|PRQ57405.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 298
Score = 271 bits (692), Expect = 2e-82
Identities = 129/223 (57%), Positives = 170/223 (76%), Gaps = 2/223 (0%)
Frame = -1
Query: 663 MITRSIDGTRRPKVLF--ATRHPIPLALTSTLQDHPIEPSTYKQATTDPHWRQAMTEEFD 490
M TR DGTR+ + L R+P+P AL + L+ +EP+ Y QA+ WR AMTEE +
Sbjct: 1 MTTRLRDGTRQLRQLTDGTVRYPLPRALLTFLET--VEPTCYSQASQKAEWRAAMTEEIN 58
Query: 489 ALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAKGFNQREGFDFEETF 310
AL + TWTLV +P+ N VGCKWV+++K ++DGSIERYKARLVAKGF+Q++G D++ETF
Sbjct: 59 ALLKTNTWTLVASSPTQNTVGCKWVFRVKWKSDGSIERYKARLVAKGFHQQQGIDYDETF 118
Query: 309 SPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQQPPGFIDPTRPTHVCH 130
SPV+K T+R +++LA+SR W +RQLDVKNAFLHG L E VY+ QPPGFIDP RP+HVC
Sbjct: 119 SPVIKPATIRTVITLAVSRGWSLRQLDVKNAFLHGILKEDVYMVQPPGFIDPARPSHVCK 178
Query: 129 LHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMWHQG 1
L+KALYGL+QAPRAW+ R + FLL +GF+ D+SLF++ QG
Sbjct: 179 LNKALYGLKQAPRAWFHRMSTFLLSVGFVQSIADSSLFIYRQG 221
>gb|PRQ16309.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 461
Score = 269 bits (688), Expect = 1e-79
Identities = 129/276 (46%), Positives = 174/276 (63%), Gaps = 7/276 (2%)
Frame = -1
Query: 1890 NQCNKVC-------CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRF 1732
+Q N +C C C+LG+ SKLPF + T L +HSDVWGP + GF++
Sbjct: 111 HQLNVLCSSSPPPLCSDCQLGRRSKLPFVNSSCTTTAPLQIIHSDVWGPTSILSVSGFKY 170
Query: 1731 YLIIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRD 1552
Y++ +D+ SRF+W FPL KSEV F +F L+ NQF+ ++K ++ D+GGEY S +
Sbjct: 171 YVLFIDDWSRFTWLFPLHCKSEVFHSFQKFKLLVENQFDTKIKSLRCDNGGEYTSAVFQS 230
Query: 1551 FFATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLIN 1372
F + GI Q FSCP TPEQNG+AERKHRH++E +L A SSLP +W T+VYLIN
Sbjct: 231 FLSNNGIAQQFSCPHTPEQNGMAERKHRHLIELTRTLFAQSSLPFKYWVEIVQTSVYLIN 290
Query: 1371 XXXXXXXXXXXPFETVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQ 1192
PFE +F PDY LR +GC CFP L P+ KL ++S +CVF+GYS
Sbjct: 291 RLPSSSLHFISPFEQLFNTAPDYNFLRAYGCLCFPWLKPYAAHKLDFRSRKCVFLGYSLY 350
Query: 1191 HKGYRCMDPSSGKIYILRHVSFDESSFPFARKSQEP 1084
KGYRC+DP++G++Y+ RHV FDE++FPF K P
Sbjct: 351 QKGYRCLDPTNGRVYVSRHVIFDENTFPFKEKLSAP 386
>ref|XP_018717930.1| PREDICTED: uncharacterized protein LOC108955176 [Eucalyptus grandis]
Length = 752
Score = 275 bits (702), Expect = 1e-78
Identities = 124/272 (45%), Positives = 179/272 (65%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
CRSCK+ KS+ LPF + + L +H D+WGP+P + + F++Y+I VD SRFSW
Sbjct: 442 CRSCKIAKSTALPFPLSDSVASRPLEQIHCDIWGPSPVNSFQHFKYYVIFVDNFSRFSWL 501
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
+PL+ KS+ ++F+ F L+ NQF+ R+K Q D GGE++SHK + GI Q SCP
Sbjct: 502 YPLKLKSDFYNVFLMFQKLVENQFDCRIKIFQCDGGGEFISHKFKSHLQNCGIQQRVSCP 561
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TP+QNG+ ERKHRH+VE GL++L H+ LP FW AF TA Y++N P+
Sbjct: 562 YTPKQNGIPERKHRHIVEFGLAMLYHARLPLKFWVDAFVTANYIVNLLPTPKLQMKSPYN 621
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
++ Q P Y HLR+FG AC+P L P+ ++K +S+ CVF+GYS +HKGYRC+ P++G I
Sbjct: 622 MLYQQQPSYDHLRIFGYACYPCLRPYAQNKFDPRSLTCVFLGYSDRHKGYRCLIPTTGHI 681
Query: 1149 YILRHVSFDESSFPFARKSQEPFSNASSVFRM 1054
YI RHV FDES FPF +K + + + ++++
Sbjct: 682 YISRHVVFDESFFPFTQKLTTNYPHHTKLYQL 713
>emb|CAN68489.1| hypothetical protein VITISV_037543 [Vitis vinifera]
Length = 1449
Score = 281 bits (719), Expect = 5e-78
Identities = 139/312 (44%), Positives = 199/312 (63%), Gaps = 2/312 (0%)
Frame = -1
Query: 1899 NYSNQCNK--VCCRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYL 1726
N S+QC+K VCC +C+ KS KLPF + L LH+D+WGP P+T G R+++
Sbjct: 542 NISHQCHKNNVCC-ACQFAKSHKLPFNVXVSRASHPLALLHADLWGPXSIPSTTGARYFI 600
Query: 1725 IIVDESSRFSWYFPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFF 1546
+ VD+ SRFSW +PL K + S+FI+F +L+ NQFN R++ +++D+GGE+ + +
Sbjct: 601 LFVDDFSRFSWIYPLHSKDQALSVFIKFKSLVENQFNSRIQCLRSDNGGEFKAFS--SYL 658
Query: 1545 ATQGIIQLFSCPGTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXX 1366
AT GI FSCP TPEQNG AERK RH++ETGL+LLA +SLP FW YAF TA++LIN
Sbjct: 659 ATHGIKSQFSCPYTPEQNGRAERKLRHIIETGLALLATASLPFKFWLYAFHTAIFLINRL 718
Query: 1365 XXXXXXXXXPFETVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHK 1186
PF+ +FG++P+Y ++FGC C+P + P+ ++KLSY+S +CVF+GYS HK
Sbjct: 719 PTKVLNYQSPFQILFGKSPNYHIFKIFGCLCYPYIRPYNKNKLSYRSSQCVFLGYSSNHK 778
Query: 1185 GYRCMDPSSGKIYILRHVSFDESSFPFARKSQEPFSNASSVFRMQSFPDQTLHYLMAAPP 1006
GY C++P +G++Y+ RHV F E+ FPF QS PDQ+ + P
Sbjct: 779 GYMCLNPLTGRLYVTRHVVFHETVFPF-----------------QSTPDQSSSVVTIPTP 821
Query: 1005 QDNSGSSPTISN 970
SSP +S+
Sbjct: 822 AFLPCSSPPVSS 833
Score = 152 bits (384), Expect = 1e-34
Identities = 75/152 (49%), Positives = 104/152 (68%)
Frame = -1
Query: 699 DPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQATTDPH 520
+P+P T+QH M+TR+ +G + KV F++ H EP+T+ QA D +
Sbjct: 872 EPHP---TNQHPMVTRAKNGISKKKVYFSS--------------HISEPTTFTQAVKDSN 914
Query: 519 WRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAKGFNQ 340
W AM +EF ALQRN TW LVP + N++GCKWVYKLK++ DG+++RYKARLVA+GF Q
Sbjct: 915 WVLAMEKEFSALQRNNTWHLVPPPSNGNIIGCKWVYKLKYKPDGTVDRYKARLVAQGFTQ 974
Query: 339 REGFDFEETFSPVVKSGTVRLILSLALSRSWP 244
G D+ ETFSPVVK+ +R+IL++ALS +WP
Sbjct: 975 TLGLDYFETFSPVVKASXIRIILAVALSFNWP 1006
>gb|PKI44367.1| hypothetical protein CRG98_035241, partial [Punica granatum]
Length = 584
Score = 268 bits (684), Expect = 1e-77
Identities = 130/240 (54%), Positives = 162/240 (67%), Gaps = 1/240 (0%)
Frame = -1
Query: 717 PGAAPFDPNPLASTSQHTMITRSIDGTRRPKVL-FATRHPIPLALTSTLQDHPIEPSTYK 541
P P P + H MITRS + +PK L T+HP+P +L EP+
Sbjct: 68 PAPPSLPPPPPHPSRPHPMITRSKNNIFKPKQLHLTTKHPLPESL---------EPTCVS 118
Query: 540 QATTDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARL 361
QA D WR AM+EEF+AL +N TW LVP + N++GCKWV+++K ADGSI RYKARL
Sbjct: 119 QALRDSKWRLAMSEEFNALVKNHTWDLVPASKRQNIIGCKWVFRIKRNADGSINRYKARL 178
Query: 360 VAKGFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYL 181
VAKGF+QR G D+ ETFSPV+K T+R++LSLA+S WPIRQLDV NAFLHG ++E VY+
Sbjct: 179 VAKGFHQRPGLDYTETFSPVIKPTTIRVVLSLAVSSGWPIRQLDVSNAFLHGSIDEEVYM 238
Query: 180 QQPPGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMWHQG 1
QPPGF+D PTHVC L KALYGL+QAPRAWY NFL+ GF+ D SLF++ G
Sbjct: 239 VQPPGFVDSNHPTHVCRLRKALYGLKQAPRAWYRALKNFLMDYGFMTSKSDASLFVFTSG 298
>gb|PKU67366.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 871
Score = 273 bits (698), Expect = 3e-77
Identities = 142/302 (47%), Positives = 182/302 (60%), Gaps = 3/302 (0%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C SC L KS KL F R TN L +HSD+WGPAP + GF++Y+I VD+ SRF+W
Sbjct: 359 CTSCHLSKSHKLSFERSTNRKKHLLELVHSDIWGPAPVISHSGFQYYVIFVDDFSRFTWI 418
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
+PL+ KSEV IFI F T + +R++K ++TD GGEY+SH +F GI SCP
Sbjct: 419 YPLKFKSEVADIFINFKTQVEKSTSRKIKSIRTDGGGEYLSHNFTNFLRHHGISHQISCP 478
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TPEQNG+AERKHRH++ET SLL + +P +W TAVYLIN PFE
Sbjct: 479 YTPEQNGVAERKHRHIIETVRSLLHTAQVPYTYWPDTALTAVYLINRMPSPNTKNVSPFE 538
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
P Y HLRVFGCACFPL P R KL KS CVF+GYS +KGY+C++ SS KI
Sbjct: 539 LFHRMKPTYDHLRVFGCACFPLTPPHTRHKLQPKSQLCVFLGYSDIYKGYKCLNLSSQKI 598
Query: 1149 YILRHVSFDESSFPFARKSQEPFSNASSVFRMQSFPDQTLHYLMAAPPQDNSGSS---PT 979
+ RHV F+E+ FPFA +P ++ + P + +PPQ +S SS PT
Sbjct: 599 TMSRHVQFEETQFPFANHKSQP----TTTLQNSISPSLLIPVTATSPPQKSSLSSYDQPT 654
Query: 978 IS 973
I+
Sbjct: 655 IA 656
Score = 127 bits (319), Expect = 1e-26
Identities = 74/192 (38%), Positives = 101/192 (52%), Gaps = 22/192 (11%)
Frame = -1
Query: 759 THAPIQQVRGSRGGPGAAPFDPNPLASTSQ----------------------HTMITRSI 646
T P + S P AP +P P++STSQ H M TR
Sbjct: 639 TSPPQKSSLSSYDQPTIAPLNPLPISSTSQSPTRHESTTNTSPCRLQPTNTRHPMTTRQQ 698
Query: 645 DGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQATTDPHWRQAMTEEFDALQRNGTW 466
G+ +P H + +H +P+ Y +A + WRQAM+EEF ALQ+ GTW
Sbjct: 699 TGSLKPVQRLNLMH-------QQISEHKPDPTAYSEAIKNIKWRQAMSEEFLALQQQGTW 751
Query: 465 TLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAKGFNQREGFDFEETFSPVVKSGT 286
+LVP P +V+GCKW Y+ K+ +DGSI ++KARLVA G NQ G D+ ETFSPV K T
Sbjct: 752 SLVP-PPKTSVLGCKWTYRTKYHSDGSIAKHKARLVALGNNQEFGLDYTETFSPVAKLPT 810
Query: 285 VRLILSLALSRS 250
+ L LS+ + +
Sbjct: 811 MELKLSITIKHT 822
>gb|PKU84334.1| putative mitochondrial protein [Dendrobium catenatum]
Length = 516
Score = 264 bits (675), Expect = 4e-77
Identities = 123/258 (47%), Positives = 168/258 (65%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C SC + KS K+ F N + + LH LHSDVWGP+P A +G+R+YLII+D+ SR+ W
Sbjct: 4 CTSCNVCKSHKISFDSSVNRSTKPLHLLHSDVWGPSPVTAEQGYRYYLIIIDDHSRYCWL 63
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
FP+ KS+V +IF+ FIT + Q + ++K ++TD GGEY+S ++ +GI +CP
Sbjct: 64 FPMFLKSDVTNIFLNFITFIEKQTDHKIKKIRTDGGGEYMSLSFQNQLRLKGIQHQVTCP 123
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TPEQNG+AERKHRH+++T ++L SS P +W AF TAV+LIN P +
Sbjct: 124 YTPEQNGVAERKHRHILDTARTMLHFSSTPHRYWTEAFTTAVHLINRLPSNTTWQKTPLQ 183
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+F PDY HLR FGCACFP L KL SI+CVF+GYS +HKGY+C+D ++ I
Sbjct: 184 LMFNIKPDYKHLRPFGCACFPFLPAHSHTKLQPNSIQCVFIGYSEKHKGYKCLDITNNTI 243
Query: 1149 YILRHVSFDESSFPFARK 1096
I RHV F E+ FPF +K
Sbjct: 244 IISRHVKFTETIFPFQQK 261
>gb|PRQ17908.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 886
Score = 271 bits (694), Expect = 1e-76
Identities = 141/304 (46%), Positives = 186/304 (61%), Gaps = 2/304 (0%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C SC GK +KLPF + HT+HSDVWGP+P + EGF++YL +D+ +RF W
Sbjct: 526 CESCLAGKFTKLPFPTSCTRSSTPFHTVHSDVWGPSPHVSIEGFKYYLTFIDDCTRFCWI 585
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
FPL K+EV S FI F + + QF+ +K +QT+ GGEY SH + F A GI+ SCP
Sbjct: 586 FPLHNKAEVCSKFIAFHSFVTTQFSSVIKILQTNGGGEYQSHTFQSFLAKNGIVHQKSCP 645
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TP+QNGLAERK+RH+VET L+LL S LP FW +A A AV+LIN PFE
Sbjct: 646 YTPQQNGLAERKNRHIVETALTLLHQSFLPPKFWFHACAIAVFLINRMPTPTLNMSSPFE 705
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+ + P L+VFGCACFPL+ P+ +KL K+++C+F+GY+ +KG+ C +PS+ K
Sbjct: 706 MLHSKPPSLESLKVFGCACFPLIKPYNSNKLQVKTVKCIFLGYAPGYKGFICFNPSNSKF 765
Query: 1149 YILRHVSFDESSFP--FARKSQEPFSNASSVFRMQSFPDQTLHYLMAAPPQDNSGSSPTI 976
I RHV FDESSFP F S EP S SS S P Q ++ P N SS T+
Sbjct: 766 IISRHVVFDESSFPYQFLSSSPEPTSFTSST----SHPVQ----VILRHPSRNKTSSSTV 817
Query: 975 SNEQ 964
+ Q
Sbjct: 818 HSAQ 821
>gb|PKI78797.1| hypothetical protein CRG98_000864 [Punica granatum]
Length = 483
Score = 261 bits (667), Expect = 2e-76
Identities = 130/250 (52%), Positives = 179/250 (71%)
Frame = -1
Query: 762 PTHAPIQQVRGSRGGPGAAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALT 583
P +AP Q V S+ P AAP P ++ H M+TRS DG+ P+ ++HP+ +++
Sbjct: 209 PVYAP-QLVPASQSVP-AAPAPP----TSRPHHMVTRSRDGSLPPRRFDLSKHPVAFSVS 262
Query: 582 STLQDHPIEPSTYKQATTDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLK 403
LQ EP+++ +A DP W +AM +EF AL N TW LVP + +++ CKWVY++K
Sbjct: 263 IGLQ----EPTSFAKAKRDPRWVEAMQDEFQALLSNRTWDLVPPPSNQHIISCKWVYRVK 318
Query: 402 HRADGSIERYKARLVAKGFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVK 223
+A+GSI+R+KARLVAKGFNQ+EG D+EETFSPV+KS T+R +LS+A+S WPIRQLDVK
Sbjct: 319 QKANGSIDRFKARLVAKGFNQQEGIDYEETFSPVIKSVTIRTVLSIAISLQWPIRQLDVK 378
Query: 222 NAFLHGDLNEVVYLQQPPGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFI 43
NAFLHG L++ VY+QQPP F+D TR VC L+++LYG +QAPRAW+ R + FLL+LGF
Sbjct: 379 NAFLHGHLDKEVYMQQPPSFVDSTRAHFVCRLNRSLYGFKQAPRAWFLRLSEFLLRLGFK 438
Query: 42 CCPHDTSLFM 13
D+SLF+
Sbjct: 439 GSRADSSLFI 448
Score = 140 bits (353), Expect = 5e-32
Identities = 74/163 (45%), Positives = 97/163 (59%), Gaps = 4/163 (2%)
Frame = -1
Query: 1452 GLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFETVFGQNPDYAHLRVFGCAC 1273
GL+LLAH+ LP FW+YAF TAVYLIN PFE + G+ PDY LRVFGC C
Sbjct: 2 GLTLLAHAHLPSKFWDYAFDTAVYLINRLPTRSLGFSSPFEKLHGKLPDYHFLRVFGCLC 61
Query: 1272 FPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKIYILRHVSFDESSFPFARKS 1093
FP L P+ + KL ++S CVF+GY GYRC DP S +I+++R V FDE SFPF
Sbjct: 62 FPYLRPYTKHKLEFRSRPCVFLGYPPSQLGYRCFDPKSNRIFVVRTVVFDEQSFPF---- 117
Query: 1092 QEPFSNASSVFRMQSFPDQTLHYLMAAP----PQDNSGSSPTI 976
P + +V ++ +F + + P D+SGSSP+I
Sbjct: 118 -RPTGSLVAVQQVSNFSESSCPSSPGLPISVQSSDSSGSSPSI 159
>gb|PRQ31173.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 1468
Score = 276 bits (706), Expect = 3e-76
Identities = 132/243 (54%), Positives = 174/243 (71%), Gaps = 3/243 (1%)
Frame = -1
Query: 720 GPGAAPFDPNPLA-STSQHTMITRSIDGTRRPKVLF--ATRHPIPLALTSTLQDHPIEPS 550
GP P P S +H M+TR DGT++P++ R+PIP AL + + +EP+
Sbjct: 882 GPALRSSSPPPATISPPRHQMVTRLQDGTQKPRIPSDGTVRYPIPRALLTMVDS--VEPT 939
Query: 549 TYKQATTDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYK 370
Y QA+ WR AM +E +AL +N TW+LVP +P+ N VGCKWV+K+K DGS+ER+K
Sbjct: 940 CYSQASKKAEWRAAMVDEINALMKNNTWSLVPSSPTQNTVGCKWVFKVKRNPDGSVERFK 999
Query: 369 ARLVAKGFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEV 190
ARLVAKGF+Q++G DF ETFSPV+K T+R ++SLA+SR W +RQLDVKNAFLHG L E
Sbjct: 1000 ARLVAKGFHQQQGIDFHETFSPVIKPATIRTVISLAVSRGWSLRQLDVKNAFLHGFLTED 1059
Query: 189 VYLQQPPGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMW 10
VY+ QPPGFID + PTHVC L+K+LYGL+QAPRAW+ R T+FLL +GF D+SLF++
Sbjct: 1060 VYMTQPPGFIDQSHPTHVCKLNKSLYGLKQAPRAWFQRMTSFLLSIGFTQSLADSSLFIF 1119
Query: 9 HQG 1
G
Sbjct: 1120 AHG 1122
Score = 268 bits (685), Expect = 2e-73
Identities = 130/306 (42%), Positives = 186/306 (60%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C+ C L KS +LPF T H +HSDVW + S + GF++Y++ DE SR++W
Sbjct: 498 CKDCALSKSHQLPFQSNNATTTTLFHIIHSDVWSSSIS-SVSGFKYYVLFTDEFSRYTWI 556
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
+P+ RK+EV + F F+ ++ N F +KF+Q+D+G EYVS+ ++ + GI Q FSCP
Sbjct: 557 YPMHRKNEVLTHFQTFVAMIQNLFLHSIKFLQSDNGTEYVSYAFSNYCNSLGIQQRFSCP 616
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TP+QNGLAERKHRH+ +LL S P + W A T+VYLIN P
Sbjct: 617 HTPQQNGLAERKHRHIATMARALLLTSGTPHNLWVEAVLTSVYLINLLPTPVLDWDTPHR 676
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
++G P Y+ LRVFGC+CFP L P+ DKLS +S+ECVF+GYS +HKGYRC+DP SG++
Sbjct: 677 RLYGTPPSYSSLRVFGCSCFPHLGPYVSDKLSSRSLECVFLGYSPKHKGYRCLDPKSGRV 736
Query: 1149 YILRHVSFDESSFPFARKSQEPFSNASSVFRMQSFPDQTLHYLMAAPPQDNSGSSPTISN 970
Y+ RHV FDE+SFP+ RK Q+P S + L + P N+ + ++ +
Sbjct: 737 YVSRHVLFDETSFPY-RKLQDPSVQVSKALELTQLTGPVLIHDAHLPSGPNARPTSSVQH 795
Query: 969 EQRPNL 952
+ +L
Sbjct: 796 QSTNSL 801
>gb|PKU67943.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 799
Score = 268 bits (685), Expect = 7e-76
Identities = 136/292 (46%), Positives = 178/292 (60%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C SC L KS KL F R TN L +HSD+WGPAP + GF++Y+I VDE SRF+W
Sbjct: 323 CTSCHLSKSHKLSFERSTNRKKNLLELVHSDIWGPAPVISHSGFQYYVIFVDEFSRFTWI 382
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
+PL+ KSEV IFI F + +R++K ++TD GGEY+SH +F GI SCP
Sbjct: 383 YPLKFKSEVADIFINFKNQVEKSTSRKIKSIRTDGGGEYLSHNFTNFLRYHGISHQISCP 442
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TPEQNG+AERKHRH++ET SLL + +P ++W TAVYLIN PFE
Sbjct: 443 YTPEQNGVAERKHRHIIETVRSLLHTAQVPYNYWPDTALTAVYLINCMPSPNTKNVSPFE 502
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+ P Y HLRVFGCACFPL P R KL S CVF+GYS +KGY+C++ SS KI
Sbjct: 503 LLHRTKPTYDHLRVFGCACFPLTPPHTRHKLQPNSQLCVFLGYSDIYKGYKCLNLSSQKI 562
Query: 1149 YILRHVSFDESSFPFARKSQEPFSNASSVFRMQSFPDQTLHYLMAAPPQDNS 994
+ RHV FDE+ FPFA ++ +++ + P + +PPQ++S
Sbjct: 563 TMSRHVQFDETQFPFANHKRQ----STTTLQNPIPPSLLIPVTAKSPPQNSS 610
Score = 120 bits (301), Expect = 1e-24
Identities = 65/151 (43%), Positives = 90/151 (59%)
Frame = -1
Query: 711 AAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQAT 532
++P P P + ++H M TR G+ +P + H + +H +P+ Y +A
Sbjct: 643 SSPCRPQP--NKTRHHMTTRQQTGSLKPVLRLNLMH-------QQIPEHKPDPTAYSEAI 693
Query: 531 TDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAK 352
+ WRQAM+EEF ALQ+ GTW LVP P +V+GCKW Y+ K+ DGSI +YKARLVA
Sbjct: 694 KNIKWRQAMSEEFLALQQQGTWGLVP-PPKTSVLGCKWTYRTKYHFDGSIAKYKARLVAL 752
Query: 351 GFNQREGFDFEETFSPVVKSGTVRLILSLAL 259
G NQ G D+ ETFSPV K T+ LS+ +
Sbjct: 753 GNNQEFGLDYTETFSPVAKLPTMVFKLSITI 783
>gb|AAD21687.1| Strong similarity to gi|3600044 T12H20.12 protease homolog from
Arabidopsis thaliana BAC gb|AF080119 and is a member of
the reverse transcriptase family PF|00078 [Arabidopsis
thaliana]
Length = 1415
Score = 275 bits (702), Expect = 8e-76
Identities = 127/260 (48%), Positives = 174/260 (66%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C C++GKSS+LPF + L +H D+WGP+P + +G ++Y I VD+ SR+SW+
Sbjct: 488 CEPCQMGKSSRLPFLISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWF 547
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
+PL KSE S+FI F L+ NQ N ++K Q+D GGE+VS+KL+ + GI SCP
Sbjct: 548 YPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCP 607
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TP+QNGLAERKHRH+VE GLS+L HS P+ FW +F TA Y+IN P+E
Sbjct: 608 YTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYE 667
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+FG+ PDY+ LRVFG AC+P L P ++K +S++CVF+GY+ Q+KGYRC P +GK+
Sbjct: 668 ALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKV 727
Query: 1149 YILRHVSFDESSFPFARKSQ 1090
YI R+V F+ES PF K Q
Sbjct: 728 YISRNVIFNESELPFKEKYQ 747
Score = 239 bits (611), Expect = 8e-64
Identities = 118/238 (49%), Positives = 155/238 (65%)
Frame = -1
Query: 717 PGAAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQ 538
P A N + H M TRS G ++P +A +TS + + EP T
Sbjct: 815 PVAEEIAANQEQVINSHAMTTRSKAGIQKPNTRYAL-------ITSRM--NTAEPKTLAS 865
Query: 537 ATTDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLV 358
A P W +A+ EE + + TW+LVP T MN++ KWV+K K DGSI++ KARLV
Sbjct: 866 AMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILSSKWVFKTKLHPDGSIDKLKARLV 925
Query: 357 AKGFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQ 178
AKGF+Q EG D+ ETFSPVV++ T+RL+L ++ S+ WPI+QLDV NAFLHG+L E V++
Sbjct: 926 AKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGWPIKQLDVSNAFLHGELQEPVFMY 985
Query: 177 QPPGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMWHQ 4
QP GFIDP +PTHVC L KA+YGL+QAPRAW+ F+NFLL GF+C D SLF+ HQ
Sbjct: 986 QPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSNFLLDYGFVCSKSDPSLFVCHQ 1043
>gb|PKU80388.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1349
Score = 274 bits (700), Expect = 1e-75
Identities = 132/281 (46%), Positives = 174/281 (61%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C SC K KL F R + T+ L +HSDVWGP+P P+ +GFR+Y+I VD+ SRF W
Sbjct: 482 CNSCLSCKGHKLSFDRSNSTTNAPLELVHSDVWGPSPVPSHQGFRYYVIFVDDFSRFVWL 541
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
FPL KS+VP+IF F+ + Q NR++K ++TD GGE+V+H + GI+ SCP
Sbjct: 542 FPLMLKSDVPNIFHNFVKFIERQTNRKLKVIRTDGGGEFVNHHFQSITKAAGILHQTSCP 601
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TPEQNGLAERKHRH++ET +LL + LP FW A +TA YLIN P +
Sbjct: 602 YTPEQNGLAERKHRHIIETTRTLLQTAGLPMSFWLEAASTATYLINRAPSATTNYLSPLQ 661
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+F P YAHL++FGC CFPLL P R KLS S C+F+GYS KGYRC++P + KI
Sbjct: 662 RMFNIKPSYAHLKIFGCECFPLLPPTQRTKLSPSSSSCIFIGYSDTMKGYRCLNPITNKI 721
Query: 1149 YILRHVSFDESSFPFARKSQEPFSNASSVFRMQSFPDQTLH 1027
RHV F+E +FPF +S + +++V P LH
Sbjct: 722 ITSRHVKFNEQAFPFHNRSVQELPASTTVPHPLLIPSSVLH 762
Score = 229 bits (583), Expect = 4e-60
Identities = 114/227 (50%), Positives = 144/227 (63%)
Frame = -1
Query: 684 ASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQATTDPHWRQAM 505
AS H M TR+ G+ RP H +H +P+T+ A WR AM
Sbjct: 807 ASLPGHHMTTRTKTGSLRPVQRLNLLHD---------GNHKKDPTTFLDANKHVEWRTAM 857
Query: 504 TEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAKGFNQREGFD 325
EEF ALQ+ GTW LV P+ +++G KW Y+ K +DGSI R+KARLVA+G Q G D
Sbjct: 858 AEEFLALQKQGTWDLVAPPPNASIIGSKWTYRTKFNSDGSIARHKARLVAQGNQQAFGID 917
Query: 324 FEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQQPPGFIDPTRP 145
F +TFSPV K T+R++ ++AL W IRQLDV NAFLHG++NE+VY++QP GF D P
Sbjct: 918 FRDTFSPVAKLPTIRIMFTIALFHQWKIRQLDVANAFLHGEINELVYMKQPRGFEDSINP 977
Query: 144 THVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMWHQ 4
HVC L KA+YGLRQAPR WYT FT FLLQ+GF P D SL + H+
Sbjct: 978 NHVCRLRKAIYGLRQAPRQWYTTFTKFLLQIGFTYSPADPSLLLLHK 1024
>gb|PKU71144.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1329
Score = 273 bits (698), Expect = 2e-75
Identities = 139/300 (46%), Positives = 190/300 (63%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C SCK+ KS KLPF TN T++ L LHSDVWGP+P GFR+YL+I+D+ SR+ W
Sbjct: 446 CVSCKMCKSHKLPFDLSTNRTNKPLQLLHSDVWGPSPVTTHHGFRYYLLIIDDYSRYCWL 505
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
FPL KS+V FI+FI + Q + +VK ++TD GGEY++H+ + + + GI SCP
Sbjct: 506 FPLVFKSDVVQHFIRFIAFIEKQTHHKVKAIRTDGGGEYINHQFQSYLRSNGIHHQVSCP 565
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TPEQNG+AERKHRH+++T +LL +S+P ++W A TAVYLIN P +
Sbjct: 566 CTPEQNGVAERKHRHILDTTKTLLQTASIPLNYWYEAVDTAVYLINRFPSPTNQNHSPLQ 625
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+F +PDYAH+R FGCACFPLL P +KL KS CVF+GYS +HKGY+C + +
Sbjct: 626 LMFNISPDYAHMRTFGCACFPLLPPHSFNKLQPKSATCVFLGYSDKHKGYKCFNQEANTT 685
Query: 1149 YILRHVSFDESSFPFARKSQEPFSNASSVFRMQSFPDQTLHYLMAAPPQDNSGSSPTISN 970
I RHV F E+ FPF ++S P + MQ+ P Q L L + Q++ +PT S+
Sbjct: 686 TISRHVQFIENLFPFQQQS-SPLTTP-----MQALPTQLL--LPVSKVQEDHRPAPTNSS 737
Score = 217 bits (552), Expect = 4e-56
Identities = 107/238 (44%), Positives = 146/238 (61%)
Frame = -1
Query: 717 PGAAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQ 538
P A D + T QH M TRS G+ +P H + T + P++Y +
Sbjct: 760 PSALNPDKPSIKHTIQHHMTTRSKTGSLKPISRLNLLHHVAPQETQNV------PTSYSE 813
Query: 537 ATTDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLV 358
A P WR AM+EEF ALQ+ GTW LV + +++GCKW ++ K +DG++ R+KARLV
Sbjct: 814 AIKHPEWRHAMSEEFAALQQQGTWDLVTPPSNASILGCKWTFRKKFNSDGTVSRFKARLV 873
Query: 357 AKGFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQ 178
A+G Q G D+EETFSPV K T+R++ ++AL W ++QLDV NAFLHG L E V+++
Sbjct: 874 AQGNRQEHGLDYEETFSPVAKLPTIRVLFTVALYNGWQVQQLDVTNAFLHGSLEETVFMR 933
Query: 177 QPPGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMWHQ 4
QP GF D P HVC L KA+YGL+QAPR WYT FT L+ +GF D SL ++ +
Sbjct: 934 QPKGFEDTMSPDHVCCLKKAIYGLKQAPRQWYTTFTTHLINIGFQHSKADPSLLVYRR 991
>gb|PKU86178.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1017
Score = 270 bits (690), Expect = 3e-75
Identities = 130/287 (45%), Positives = 178/287 (62%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C +C+L KS KLPFT + + L +HSDVWGP+ + +G+++Y+I VD+ SRFSW
Sbjct: 137 CNACELAKSHKLPFTSSISRSSSVLQLIHSDVWGPSSVISLQGYKYYIIFVDDFSRFSWL 196
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
FPL KSEVP IF++F L+ QFN ++K ++D GGEY S + + AT GI+ +CP
Sbjct: 197 FPLTAKSEVPLIFVRFQRLVERQFNAKIKIFRSDGGGEYTSKQFQSLLATSGIVHQLTCP 256
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TPEQNGLAERKHRH++ET +LL HS++P+ FW +A T V+LIN P++
Sbjct: 257 YTPEQNGLAERKHRHIIETTRALLFHSNIPQKFWIHAVQTVVHLINRLPSLSNKLSSPYQ 316
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+F + PDY R+FGC C+P L K KSI CVFVGY KGY C + SSGK
Sbjct: 317 MLFNKPPDYNSFRIFGCLCYPFLPQAALSKFHPKSIPCVFVGYPLSSKGYICYNISSGKF 376
Query: 1149 YILRHVSFDESSFPFARKSQEPFSNASSVFRMQSFPDQTLHYLMAAP 1009
+ RHV F E+ FPF + + EP ++++ + P TL M P
Sbjct: 377 IVSRHVKFLETIFPFQQSTPEPVQSSTTTYT----PPLTLVPTMVQP 419
Score = 232 bits (591), Expect = 1e-61
Identities = 111/236 (47%), Positives = 151/236 (63%)
Frame = -1
Query: 717 PGAAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQ 538
P ++P P + H M+TRS G +PK + + H P++P+ Y Q
Sbjct: 454 PQSSPVIEPPASEIPSHPMLTRSRTGNLKPKHILSMNH----------FHIPVDPTCYSQ 503
Query: 537 ATTDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLV 358
A WRQAM+ EF+ALQ GTW LVP PS NV+ CKW+YK K +DGSI R+KARLV
Sbjct: 504 AVKSSAWRQAMSAEFEALQHQGTWQLVPPHPSQNVLSCKWIYKSKLNSDGSIARHKARLV 563
Query: 357 AKGFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQ 178
A+G +Q+ G D+E+TFSPV K T+R+ L +A++ W I QLDV NAFLHG L++ V++
Sbjct: 564 ARGCHQQYGLDYEDTFSPVAKLPTIRIFLKVAVTHHWQILQLDVSNAFLHGRLHDTVFMT 623
Query: 177 QPPGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMW 10
QP GF+DP+ P HVC L KA+YGL+Q+PR W+ F+ +LL GF D SL ++
Sbjct: 624 QPQGFVDPSFPDHVCLLKKAIYGLKQSPRKWFETFSTYLLNFGFTHSTADPSLLLY 679
>gb|PKA48247.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 250
Score = 250 bits (639), Expect = 3e-75
Identities = 124/230 (53%), Positives = 154/230 (66%), Gaps = 3/230 (1%)
Frame = -1
Query: 696 PNPLASTSQHTMITRSIDGTRRPKVLFA---TRHPIPLALTSTLQDHPIEPSTYKQATTD 526
P AS+ T + I P L ++HP P AL +++ H E + + QA+ D
Sbjct: 4 PTVSASSPPRTRLLADIYQQTEPVTLSLITYSKHPFPTALVASI--HMPEHTCFTQASKD 61
Query: 525 PHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAKGF 346
P W M EFDAL RNGTW LVP TPSMN+VGCKWVYKLKH+ADGSIERYK RLV KG
Sbjct: 62 PAWCATMATEFDALLRNGTWDLVPRTPSMNIVGCKWVYKLKHQADGSIERYKVRLVVKGH 121
Query: 345 NQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQQPPG 166
+Q+ G D+ +TFSPV+K TVRL+LS+ + +W +RQLDV AFL+G L E VY++QPPG
Sbjct: 122 HQQPGLDYTDTFSPVIKITTVRLLLSIVICSNWNVRQLDVSTAFLYGSLKETVYMEQPPG 181
Query: 165 FIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLF 16
F P P+HVCHLHK+LYGL+QAPRAW+ R +L GF TSLF
Sbjct: 182 FTHPLYPSHVCHLHKSLYGLKQAPRAWFNRLGGWLQTQGFSGFKTGTSLF 231
>gb|PKU78515.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1165
Score = 271 bits (694), Expect = 3e-75
Identities = 124/265 (46%), Positives = 168/265 (63%)
Frame = -1
Query: 1869 CRSCKLGKSSKLPFTRRTNYTDQFLHTLHSDVWGPAPSPATEGFRFYLIIVDESSRFSWY 1690
C C + K+ K+ F N L LHSD+WGPAPS + +GF++Y I VD+ +RF+W
Sbjct: 280 CMQCNVSKAHKMSFDTSVNRKKFALELLHSDIWGPAPSVSVQGFQYYAIFVDDCTRFTWL 339
Query: 1689 FPLRRKSEVPSIFIQFITLMHNQFNRRVKFVQTDSGGEYVSHKLRDFFATQGIIQLFSCP 1510
FPL+RKS++ IF F + +R +K ++TD GGEY+SH +F T GI+ SCP
Sbjct: 340 FPLKRKSDIAQIFFTFKQYIEKYLSRSIKCIRTDGGGEYLSHTFTEFLKTNGIMHQISCP 399
Query: 1509 GTPEQNGLAERKHRHVVETGLSLLAHSSLPRHFWNYAFATAVYLINXXXXXXXXXXXPFE 1330
TPEQNG+AERKHRH++ET SLL + +P +W A TAVYLIN PFE
Sbjct: 400 YTPEQNGVAERKHRHIIETTRSLLHTAHIPYTYWPDAVLTAVYLINRLPSRNTKNLSPFE 459
Query: 1329 TVFGQNPDYAHLRVFGCACFPLLDPFGRDKLSYKSIECVFVGYSGQHKGYRCMDPSSGKI 1150
+ P+Y HLR FGCAC+PLL R KL KS +CVF+GYS HKGY+C+D S+ K+
Sbjct: 460 LLHNTKPNYTHLRTFGCACYPLLPSHTRHKLQPKSKQCVFIGYSDTHKGYKCLDVSNNKV 519
Query: 1149 YILRHVSFDESSFPFARKSQEPFSN 1075
++ RH++FDE FPF+ + +N
Sbjct: 520 FVSRHLTFDEQMFPFSIQQDNKLNN 544
Score = 226 bits (575), Expect = 3e-59
Identities = 115/236 (48%), Positives = 149/236 (63%)
Frame = -1
Query: 711 AAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQAT 532
A P P A+ H MITR G+ +P H + +++H P+ Y A
Sbjct: 599 ALPSQPCSPAAPISHHMITRRQTGSLKPVNRLNLLHQL-----EPVKNH-FTPTAYSDAV 652
Query: 531 TDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAK 352
P WR+AM +E AL + GTW+LVP P+ V+GCKW Y+LK +DGSI +YK RLVA
Sbjct: 653 KYPEWRKAMADEILALHQQGTWSLVP-QPTSQVLGCKWTYRLKLHSDGSIAKYKVRLVAL 711
Query: 351 GFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQQP 172
G NQ G ++ ETFSPV K T+R++L++A SR W I QLDV NAFLHG L+E V++ QP
Sbjct: 712 GNNQEFGLNYTETFSPVAKLPTIRILLTIAFSRDWQIHQLDVANAFLHGTLSETVFMHQP 771
Query: 171 PGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFMWHQ 4
GF DP P +VC LHKALYGL+QAPR WY FT +LL LGF D SLF++++
Sbjct: 772 KGFEDPNHPNYVCRLHKALYGLKQAPRQWYNTFTAYLLSLGFTNSVSDPSLFLFNK 827
>ref|XP_019231431.1| PREDICTED: uncharacterized protein LOC109212247 isoform X2
[Nicotiana attenuata]
Length = 552
Score = 260 bits (664), Expect = 4e-75
Identities = 128/233 (54%), Positives = 168/233 (72%)
Frame = -1
Query: 711 AAPFDPNPLASTSQHTMITRSIDGTRRPKVLFATRHPIPLALTSTLQDHPIEPSTYKQAT 532
A+P + P A H++ TRS G +PK +F+ L + +Q+ IEPS + QA
Sbjct: 54 ASPTNSMPPA----HSLHTRSKSGISKPKQIFS--------LNTIIQE--IEPSCFSQAV 99
Query: 531 TDPHWRQAMTEEFDALQRNGTWTLVPLTPSMNVVGCKWVYKLKHRADGSIERYKARLVAK 352
P W+QAM ++F+AL N TW LVP P MN+VGCKWVY++K+ + GS+ERYKARLVA+
Sbjct: 100 KSPKWQQAMADKFNALLANNTWVLVPFQPHMNLVGCKWVYRIKYNSAGSVERYKARLVAQ 159
Query: 351 GFNQREGFDFEETFSPVVKSGTVRLILSLALSRSWPIRQLDVKNAFLHGDLNEVVYLQQP 172
GF+Q+ G D+ ETFSPVV++ T+R+ LSLA+S SWPIRQLDVKNAFLHG LNE V+++QP
Sbjct: 160 GFHQQPGIDYHETFSPVVRATTIRIFLSLAVSFSWPIRQLDVKNAFLHGVLNEEVFIKQP 219
Query: 171 PGFIDPTRPTHVCHLHKALYGLRQAPRAWYTRFTNFLLQLGFICCPHDTSLFM 13
PGF P P HVC L KALYGL+QAP AW+ RF++FL+ FIC DTS+F+
Sbjct: 220 PGFTHPDYPRHVCKLTKALYGLKQAPCAWFHRFSSFLMDHDFICSKSDTSMFI 272