BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00021281
         (1042 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNX78425.1| DNA-directed RNA polymerase ii subunit rpb1-like ...   147   2e-40
ref|XP_021275284.1| DNA-directed RNA polymerase II subunit 1-lik...   153   2e-38
ref|XP_018807320.1| PREDICTED: DNA-directed RNA polymerase II su...   155   4e-38
ref|XP_020250011.1| DNA-directed RNA polymerase II subunit 1 [As...   155   4e-38
gb|PPD96835.1| hypothetical protein GOBAR_DD06103 [Gossypium bar...   154   8e-38
gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium r...   154   8e-38
ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II su...   154   8e-38
ref|XP_016696697.1| PREDICTED: DNA-directed RNA polymerase II su...   154   8e-38
ref|XP_012491467.1| PREDICTED: DNA-directed RNA polymerase II su...   154   8e-38
ref|XP_017630481.1| PREDICTED: DNA-directed RNA polymerase II su...   154   8e-38
ref|XP_016676342.1| PREDICTED: DNA-directed RNA polymerase II su...   154   8e-38
ref|XP_016676336.1| PREDICTED: DNA-directed RNA polymerase II su...   154   8e-38
gb|PPS04630.1| hypothetical protein GOBAR_AA16027 [Gossypium bar...   154   8e-38
gb|KOM28113.1| hypothetical protein LR48_Vigan499s005700 [Vigna ...   153   1e-37
emb|CDP14969.1| unnamed protein product [Coffea canephora] >gi|6...   145   1e-37
ref|XP_022751509.1| DNA-directed RNA polymerase II subunit 1 [Du...   153   2e-37
ref|XP_007046584.2| PREDICTED: DNA-directed RNA polymerase II su...   153   2e-37
gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isofo...   153   2e-37
gb|OMO55766.1| RNA polymerase II, heptapeptide repeat, eukaryoti...   153   2e-37
gb|PON49951.1| DNA-directed RNA polymerase, subunit gamma [Paras...   149   2e-37

>gb|PNX78425.1| DNA-directed RNA polymerase ii subunit rpb1-like protein [Trifolium
           pratense]
 gb|PNX83098.1| DNA-directed RNA polymerase ii subunit rpb1-like protein [Trifolium
           pratense]
          Length = 119

 Score =  147 bits (372), Expect = 2e-40
 Identities = 67/87 (77%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPK+ GLSDPRLGTIDRK+K  TCT +M ECPGHFG+LELA
Sbjct: 27  EIRQMAVVQIEHGETTERGKPKIGGLSDPRLGTIDRKMKCETCTASMAECPGHFGYLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGF+KTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFLKTVLSIMRCVCFNCSKIL 113


>ref|XP_021275284.1| DNA-directed RNA polymerase II subunit 1-like [Herrania umbratica]
          Length = 545

 Score =  153 bits (387), Expect = 2e-38
 Identities = 71/87 (81%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_018807320.1| PREDICTED: DNA-directed RNA polymerase II subunit 1, partial
           [Juglans regia]
          Length = 1671

 Score =  155 bits (392), Expect = 4e-38
 Identities = 71/87 (81%), Positives = 79/87 (90%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ETMERGKPK+ GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETMERGKPKIAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_020250011.1| DNA-directed RNA polymerase II subunit 1 [Asparagus officinalis]
 gb|ONK55404.1| uncharacterized protein A4U43_UnF3880 [Asparagus officinalis]
          Length = 1843

 Score =  155 bits (392), Expect = 4e-38
 Identities = 73/87 (83%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQVEH ETMERGKPKV GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQVEHGETMERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLAIMRCVCFNCSKIL 113


>gb|PPD96835.1| hypothetical protein GOBAR_DD06103 [Gossypium barbadense]
          Length = 1792

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium raimondii]
          Length = 1809

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X2
           [Gossypium raimondii]
          Length = 1832

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_016696697.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Gossypium
           hirsutum]
          Length = 1839

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_012491467.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X1
           [Gossypium raimondii]
 ref|XP_012491468.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X1
           [Gossypium raimondii]
 ref|XP_012491470.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X1
           [Gossypium raimondii]
 ref|XP_012491471.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X1
           [Gossypium raimondii]
 gb|KJB43255.1| hypothetical protein B456_007G190500 [Gossypium raimondii]
 gb|KJB43256.1| hypothetical protein B456_007G190500 [Gossypium raimondii]
 gb|KJB43258.1| hypothetical protein B456_007G190500 [Gossypium raimondii]
          Length = 1846

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_017630481.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Gossypium
           arboreum]
 ref|XP_017630482.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Gossypium
           arboreum]
 ref|XP_017630483.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Gossypium
           arboreum]
          Length = 1853

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_016676342.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X2
           [Gossypium hirsutum]
          Length = 1853

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_016676336.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
           [Gossypium hirsutum]
          Length = 1863

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>gb|PPS04630.1| hypothetical protein GOBAR_AA16027 [Gossypium barbadense]
          Length = 1865

 Score =  154 bits (390), Expect = 8e-38
 Identities = 72/87 (82%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVGGLSDPRLGTIDRKLKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>gb|KOM28113.1| hypothetical protein LR48_Vigan499s005700 [Vigna angularis]
          Length = 725

 Score =  153 bits (386), Expect = 1e-37
 Identities = 71/92 (77%), Positives = 81/92 (88%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRKLK  TCT +M ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKLKCETCTASMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKILDKQSN 567
           KP+F+IGF+KTVLTIMRCVCFNCSKIL  +++
Sbjct: 87  KPMFHIGFLKTVLTIMRCVCFNCSKILADEND 118


>emb|CDP14969.1| unnamed protein product [Coffea canephora]
 emb|CDP01841.1| unnamed protein product [Coffea canephora]
          Length = 295

 Score =  145 bits (367), Expect = 1e-37
 Identities = 66/87 (75%), Positives = 76/87 (87%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VV +EH ET ERGKPK+ GLSDPRLGTIDRK+K  TC  +M ECPGHFGHLELA
Sbjct: 27  EIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTIDRKMKCETCMASMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGF+KTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFIKTVLSIMRCVCFNCSKIL 113


>ref|XP_022751509.1| DNA-directed RNA polymerase II subunit 1 [Durio zibethinus]
          Length = 1859

 Score =  153 bits (387), Expect = 2e-37
 Identities = 71/87 (81%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>ref|XP_007046584.2| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Theobroma
           cacao]
          Length = 1861

 Score =  153 bits (387), Expect = 2e-37
 Identities = 71/87 (81%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>gb|EOX90741.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
           cacao]
 gb|EOX90742.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
           cacao]
 gb|EOX90743.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
           cacao]
          Length = 1861

 Score =  153 bits (387), Expect = 2e-37
 Identities = 71/87 (81%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>gb|OMO55766.1| RNA polymerase II, heptapeptide repeat, eukaryotic [Corchorus
           capsularis]
          Length = 2132

 Score =  153 bits (387), Expect = 2e-37
 Identities = 71/87 (81%), Positives = 78/87 (89%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ET ERGKPKV GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGFMKTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFMKTVLSIMRCVCFNCSKIL 113


>gb|PON49951.1| DNA-directed RNA polymerase, subunit gamma [Parasponia andersonii]
          Length = 460

 Score =  149 bits (376), Expect = 2e-37
 Identities = 69/87 (79%), Positives = 77/87 (88%)
 Frame = -3

Query: 842 QARQI*VVQVEHRETMERGKPKVDGLSDPRLGTIDRKLKYGTCTVNMVECPGHFGHLELA 663
           + RQ+ VVQ+EH ETM  GKPKV GLSDPRLGTIDRK+K  TCT NM ECPGHFGHLELA
Sbjct: 27  EIRQMSVVQIEHSETMMGGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86

Query: 662 KPIFYIGFMKTVLTIMRCVCFNCSKIL 582
           KP+F+IGF+KTVL+IMRCVCFNCSKIL
Sbjct: 87  KPMFHIGFLKTVLSIMRCVCFNCSKIL 113