BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00020994
         (1719 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [As...   756   0.0  
gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagu...   666   0.0  
ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV su...   645   0.0  
ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV su...   645   0.0  
ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV su...   633   0.0  
ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su...   588   0.0  
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su...   588   0.0  
ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 iso...   582   0.0  
ref|XP_020084502.1| DNA-directed RNA polymerase IV subunit 1 iso...   568   0.0  
gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas ...   562   0.0  
gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest sub...   533   e-177
gb|ONM02908.1| DNA-directed RNA polymerase IV subunit 1 [Zea mays]    533   e-176
gb|ONM02909.1| DNA-directed RNA polymerase IV subunit 1, partial...   533   e-176
gb|ONM02906.1| DNA-directed RNA polymerase IV subunit 1, partial...   533   e-175
ref|XP_022682777.1| DNA-directed RNA polymerase IV subunit 1 iso...   539   e-174
ref|XP_012701776.1| DNA-directed RNA polymerase IV subunit 1 iso...   539   e-174
ref|XP_022682776.1| DNA-directed RNA polymerase IV subunit 1 iso...   539   e-173
ref|XP_004970757.1| DNA-directed RNA polymerase IV subunit 1 iso...   539   e-173
gb|PNT71744.1| hypothetical protein BRADI_2g34876v3 [Brachypodiu...   526   e-172
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub...   533   e-171

>ref|XP_020262150.1| DNA-directed RNA polymerase IV subunit 1 [Asparagus officinalis]
          Length = 1529

 Score =  756 bits (1951), Expect = 0.0
 Identities = 383/577 (66%), Positives = 452/577 (78%), Gaps = 4/577 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            IFLS +PV+PNCQ VVET            DK TK YR VVDAS+ I+E+H+HQQFGF A
Sbjct: 290  IFLSYVPVAPNCQHVVETXXXXXXNV----DKCTKVYRSVVDASRNINEYHQHQQFGFRA 345

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
            A+ IASRVHDCLN+SKLH+N  S  + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR
Sbjct: 346  AAYIASRVHDCLNISKLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFR 404

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
            +IMIGDPK++ GEIGLP+D+   LYI+EHVN HNV+KLK  C LH+ SK EL ARRK KL
Sbjct: 405  VIMIGDPKMKTGEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKL 464

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
            I IH+S QLQVGDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+  VSINPLCCA
Sbjct: 465  ILIHNSKQLQVGDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCA 524

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            PLLGDFDGDCLHGFVPQS+ ARV            FN Q G+SLLSLTHDSLTAAHLLME
Sbjct: 525  PLLGDFDGDCLHGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLME 584

Query: 901  GEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIV 1080
             E+F +K EMQQL ML P   +FP +IKAP ++MP+WTG QLFSM+LP++M+F+  SS  
Sbjct: 585  DEIFLNKREMQQLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSF 644

Query: 1081 EVCNGDLVPSPGV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGL 1248
            E+  GDLVP  GV    S SS+  IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGL
Sbjct: 645  EIRKGDLVPPSGVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGL 704

Query: 1249 SVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSH 1428
            SVSLHD+YL S+ YTR KLI+EVS ALEEAK S  F+ELMLEP +G ++K HDE++DLSH
Sbjct: 705  SVSLHDIYLASNAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSH 764

Query: 1429 TLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXX 1608
            T+++SN  R  RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K   
Sbjct: 765  TIDVSNITR-TRPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQ 823

Query: 1609 XXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFDRSL 1719
                     S K LPF+IPL+LSC  WN+HKAF+RS+
Sbjct: 824  QGLCLGLQLSTKTLPFTIPLELSCFAWNEHKAFNRSV 860


>gb|ONK73338.1| uncharacterized protein A4U43_C04F29910 [Asparagus officinalis]
          Length = 1445

 Score =  666 bits (1718), Expect = 0.0
 Identities = 336/506 (66%), Positives = 400/506 (79%), Gaps = 4/506 (0%)
 Frame = +1

Query: 214  LNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFRMIMIGDPKIQL 393
            L+ ++LH+N  S  + + Y S +ND+PS TGLKW+KEVVLSKRSDNTFR+IMIGDPK++ 
Sbjct: 273  LSPAQLHNNSTSAEEQAAY-SVKNDKPSCTGLKWVKEVVLSKRSDNTFRVIMIGDPKMKT 331

Query: 394  GEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQV 573
            GEIGLP+D+   LYI+EHVN HNV+KLK  C LH+ SK EL ARRK KLI IH+S QLQV
Sbjct: 332  GEIGLPRDICENLYIAEHVNNHNVKKLKEVCELHVRSKRELHARRKDKLILIHNSKQLQV 391

Query: 574  GDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCL 753
            GDT N+ LEDGDIIMVNRNPSVHPHSLLALSVKILPV+  VSINPLCCAPLLGDFDGDCL
Sbjct: 392  GDTFNKPLEDGDIIMVNRNPSVHPHSLLALSVKILPVKDVVSINPLCCAPLLGDFDGDCL 451

Query: 754  HGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQ 933
            HGFVPQS+ ARV            FN Q G+SLLSLTHDSLTAAHLLME E+F +K EMQ
Sbjct: 452  HGFVPQSIGARVELKELLSLDSQLFNYQGGQSLLSLTHDSLTAAHLLMEDEIFLNKREMQ 511

Query: 934  QLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSP 1113
            QL ML P   +FP +IKAP ++MP+WTG QLFSM+LP++M+F+  SS  E+  GDLVP  
Sbjct: 512  QLNMLCPWNLEFPTVIKAPTIEMPQWTGWQLFSMLLPIDMDFAPASSSFEIRKGDLVPPS 571

Query: 1114 GV----SFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTS 1281
            GV    S SS+  IS +FSRMFECYG KA+ YLF FQE+LCEYLTMRGLSVSLHD+YL S
Sbjct: 572  GVSSSSSSSSQKIISEIFSRMFECYGGKAHEYLFHFQEILCEYLTMRGLSVSLHDIYLAS 631

Query: 1282 DPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARER 1461
            + YTR KLI+EVS ALEEAK S  F+ELMLEP +G ++K HDE++DLSHT+++SN  R  
Sbjct: 632  NAYTRTKLINEVSCALEEAKGSFRFSELMLEPMVGFLLKEHDESDDLSHTIDVSNITR-T 690

Query: 1462 RPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSA 1641
            RP+S+ASIAKFKD+FRDLQ+VV +Y+S++NSLFTMM AGSKGSL K            S 
Sbjct: 691  RPMSEASIAKFKDIFRDLQNVVHHYVSADNSLFTMMRAGSKGSLLKLVQQGLCLGLQLST 750

Query: 1642 KPLPFSIPLKLSCPEWNQHKAFDRSL 1719
            K LPF+IPL+LSC  WN+HKAF+RS+
Sbjct: 751  KTLPFTIPLELSCFAWNEHKAFNRSV 776


>ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Phoenix dactylifera]
          Length = 1566

 Score =  645 bits (1664), Expect = 0.0
 Identities = 327/570 (57%), Positives = 413/570 (72%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLS +PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDEF +HQQF  +A
Sbjct: 289  LFLSYLPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLA 348

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
             S I SRV DCLNVSKL +  +S GD S            +GLKW+KEVVLSKRSDN FR
Sbjct: 349  TSFITSRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFR 398

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
            M M+GDPKI+LG+IG+P D+S+ +YISEHVN +N+EKL  SC LHL++K EL +R KG+L
Sbjct: 399  MTMVGDPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQL 458

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
              +  S+QLQVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCA
Sbjct: 459  TSVRKSNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCA 518

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            PLLGDFDGDCLHG+VPQSV  RV             N QDGRSL+SL+HDSLTAAHLL  
Sbjct: 519  PLLGDFDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTN 578

Query: 901  GEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIV 1080
              VF +KFEMQQ EML P +S  P+IIKAP  + P WTG+QLFSM+LP  M+FS  S+ +
Sbjct: 579  SIVFLNKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKI 638

Query: 1081 EVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSL 1260
             +  G+++ + G SF  +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL
Sbjct: 639  PISKGEVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSL 698

Query: 1261 HDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNI 1440
             D+YL+SD Y+R K+ DEV + LEEA+ +CH  +LML+PE+  ++K+HD T       N 
Sbjct: 699  GDVYLSSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNP 753

Query: 1441 SNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXX 1620
             N+AR ++ ISQ SIA F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K       
Sbjct: 754  YNYARNQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGAC 813

Query: 1621 XXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                  A PLPF IP +LSC   N  K  +
Sbjct: 814  LGLQLPASPLPFRIPRRLSCVSLNAQKKLE 843


>ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
 ref|XP_017700628.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
          Length = 1567

 Score =  645 bits (1664), Expect = 0.0
 Identities = 327/570 (57%), Positives = 413/570 (72%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLS +PVSPNC RVVET H ++DGP+LS D+STKAY+ +VD S+KIDEF +HQQF  +A
Sbjct: 289  LFLSYLPVSPNCHRVVETSHVHADGPQLSFDQSTKAYKRLVDISRKIDEFRQHQQFVPLA 348

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
             S I SRV DCLNVSKL +  +S GD S            +GLKW+KEVVLSKRSDN FR
Sbjct: 349  TSFITSRVLDCLNVSKLRARNSSNGDSS----------CLSGLKWLKEVVLSKRSDNVFR 398

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
            M M+GDPKI+LG+IG+P D+S+ +YISEHVN +N+EKL  SC LHL++K EL +R KG+L
Sbjct: 399  MTMVGDPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLTKEELHSRSKGQL 458

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
              +  S+QLQVGDT+ R LE+ D+I+VNR PSVH HSL+ALSVKILP++S VSINPLCCA
Sbjct: 459  TSVRKSNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSVVSINPLCCA 518

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            PLLGDFDGDCLHG+VPQSV  RV             N QDGRSL+SL+HDSLTAAHLL  
Sbjct: 519  PLLGDFDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTN 578

Query: 901  GEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIV 1080
              VF +KFEMQQ EML P +S  P+IIKAP  + P WTG+QLFSM+LP  M+FS  S+ +
Sbjct: 579  SIVFLNKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTMDFSMGSNKI 638

Query: 1081 EVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSL 1260
             +  G+++ + G SF  +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL
Sbjct: 639  PISKGEVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSL 698

Query: 1261 HDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNI 1440
             D+YL+SD Y+R K+ DEV + LEEA+ +CH  +LML+PE+  ++K+HD T       N 
Sbjct: 699  GDVYLSSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHDGT-----CRNP 753

Query: 1441 SNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXX 1620
             N+AR ++ ISQ SIA F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K       
Sbjct: 754  YNYARNQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGAC 813

Query: 1621 XXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                  A PLPF IP +LSC   N  K  +
Sbjct: 814  LGLQLPASPLPFRIPRRLSCVSLNAQKKLE 843


>ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
            guineensis]
          Length = 1569

 Score =  633 bits (1632), Expect = 0.0
 Identities = 318/573 (55%), Positives = 412/573 (71%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLS +PV+PNC RVVET + ++DGP+LS D+ TKAY+ +VD S+KI+EF +HQQF  +A
Sbjct: 289  LFLSYLPVAPNCHRVVETSYVHADGPQLSFDERTKAYKRLVDISRKIEEFRQHQQFVPLA 348

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
             S I +RV DCLNVSKL +  +S GD S            +GLKW+K+VVLSKRSDN FR
Sbjct: 349  TSFITNRVLDCLNVSKLRTRNSSNGDSS----------CLSGLKWLKDVVLSKRSDNAFR 398

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
            M MIGDPKI+LG+IG+P D+S+ L +SEHVNA+N+EKL  SC LHL++  EL  R KG+L
Sbjct: 399  MTMIGDPKIKLGQIGIPFDLSQNLCVSEHVNAYNLEKLNMSCNLHLLTNEELHTRSKGRL 458

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
              +  S+QLQ+GDT+ R LE+GD+I+VNR PSVH HSL+ALS KILP++S VSINPLCCA
Sbjct: 459  TSVRKSNQLQIGDTIYRPLENGDLILVNRPPSVHQHSLIALSAKILPIQSVVSINPLCCA 518

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            PLLGDFDGDCLHG+VPQSV  RV             N QDGRSL+SL+HDSLTAAHLL  
Sbjct: 519  PLLGDFDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDSLTAAHLLTS 578

Query: 901  GEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIV 1080
              VF +KFEMQQLEML   +  FP+IIKAP  + P WTG+QLFSM+LP  M+FS   + +
Sbjct: 579  NIVFLNKFEMQQLEMLCFSRLPFPSIIKAPTTRFPLWTGQQLFSMVLPPAMDFSMGPNKI 638

Query: 1081 EVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSL 1260
            ++  G+++ + GVS   +N  S +FS MF+CYG KA ++LFS QEVLCEYLT RGLSVSL
Sbjct: 639  QISKGEVLSTSGVSSWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYLTTRGLSVSL 698

Query: 1261 HDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNI 1440
             D+YL+SD Y+R K+ DEV + LEEA+ +CH  ++ML+PE+  + K+HD T       N+
Sbjct: 699  GDVYLSSDLYSRRKMTDEVFYGLEEAEDACHIKQIMLDPEMEFLFKSHDGT-----YRNL 753

Query: 1441 SNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXX 1620
             N+AR R+ ISQ S+A F+D+F DLQ+V+  YIS +NS+  M++AGSKGSL+K       
Sbjct: 754  YNYARNRKHISQFSVAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLSKLVQQGAC 813

Query: 1621 XXXXXSAKPLPFSIPLKLSCPEWNQHKAFDRSL 1719
                  + PLPF IP +LSC  WN  K  +  +
Sbjct: 814  LGLQLPSSPLPFRIPRRLSCVSWNAQKKSEHGI 846


>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1562

 Score =  588 bits (1515), Expect = 0.0
 Identities = 300/570 (52%), Positives = 397/570 (69%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLS +P++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI EF  HQQFG +A
Sbjct: 286  LFLSYLPITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLA 345

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
             S   SRV DC N SKLH++ +S GD            S++G++W+K+VVLSKR+DN FR
Sbjct: 346  TSYTMSRVLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFR 393

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
            M M+GDPKI+L EIG+P D+S +L ++E VN++N+EKL  SC LHL+ K  L  R KG+L
Sbjct: 394  MTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQL 453

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
              +H ++QLQVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCA
Sbjct: 454  TSLHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCA 513

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            PLLGDFDGDCLHG+VPQS+  RV            FN QDGRSL+SLTHDSLTAA+LL  
Sbjct: 514  PLLGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTA 573

Query: 901  GEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIV 1080
               F +K +MQQL ML P     PA++K P  Q+P WTG QLFSM+LP  M+F   S  +
Sbjct: 574  NREFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM 633

Query: 1081 EVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSL 1260
             +  G+++ S G SF  +N  +GLF+ MF+ YG KA +YL   QE+LCEYLT+RGLSVSL
Sbjct: 634  -ISKGEVMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSL 692

Query: 1261 HDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNI 1440
             D+YL+SD Y+R K++DE+ F LEEA+ +C   +LMLEPE+  I++  ++ ED    ++ 
Sbjct: 693  GDVYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQ 751

Query: 1441 SNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXX 1620
               A ER  +SQ SIA FK+++ DL S +  +I+ +NS+  M+ AGSKGSL K       
Sbjct: 752  YKIASERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGAC 811

Query: 1621 XXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                  A PLPF++P KL+C  WN  KA D
Sbjct: 812  LGLQLFAHPLPFTVPSKLNCCMWNNLKALD 841


>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
 ref|XP_009411450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 1569

 Score =  588 bits (1515), Expect = 0.0
 Identities = 300/570 (52%), Positives = 397/570 (69%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLS +P++PNCQRVVET H ++DGP+LS D+ T+AY+ + D SKKI EF  HQQFG +A
Sbjct: 293  LFLSYLPITPNCQRVVETSHVFADGPKLSFDERTRAYKRLADVSKKIGEFRHHQQFGPLA 352

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
             S   SRV DC N SKLH++ +S GD            S++G++W+K+VVLSKR+DN FR
Sbjct: 353  TSYTMSRVLDCFNASKLHASSSSRGD------------STSGIRWLKDVVLSKRTDNVFR 400

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
            M M+GDPKI+L EIG+P D+S +L ++E VN++N+EKL  SC LHL+ K  L  R KG+L
Sbjct: 401  MTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLRKEGLNTRSKGQL 460

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
              +H ++QLQVGD ++R LE+GDII+VNR PSVH HSL+ALSV ILP++S +SINPLCCA
Sbjct: 461  TSLHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSVISINPLCCA 520

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            PLLGDFDGDCLHG+VPQS+  RV            FN QDGRSL+SLTHDSLTAA+LL  
Sbjct: 521  PLLGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDSLTAAYLLTA 580

Query: 901  GEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIV 1080
               F +K +MQQL ML P     PA++K P  Q+P WTG QLFSM+LP  M+F   S  +
Sbjct: 581  NREFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTMDFGVNSRNM 640

Query: 1081 EVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSL 1260
             +  G+++ S G SF  +N  +GLF+ MF+ YG KA +YL   QE+LCEYLT+RGLSVSL
Sbjct: 641  -ISKGEVMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYLTLRGLSVSL 699

Query: 1261 HDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNI 1440
             D+YL+SD Y+R K++DE+ F LEEA+ +C   +LMLEPE+  I++  ++ ED    ++ 
Sbjct: 700  GDVYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEME-ILRNQNKDEDTLDCISQ 758

Query: 1441 SNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXX 1620
               A ER  +SQ SIA FK+++ DL S +  +I+ +NS+  M+ AGSKGSL K       
Sbjct: 759  YKIASERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLVKLIQQGAC 818

Query: 1621 XXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                  A PLPF++P KL+C  WN  KA D
Sbjct: 819  LGLQLFAHPLPFTVPSKLNCCMWNNLKALD 848


>ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
 ref|XP_020084501.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
          Length = 1545

 Score =  582 bits (1501), Expect = 0.0
 Identities = 293/574 (51%), Positives = 401/574 (69%), Gaps = 4/574 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLS-HDKSTKAYRGVVDASKKIDEFHKHQQFGFV 177
            +FLS +PV+ N  R +ET H ++DGP+LS  D+ TKAY+ VV+ S++IDEF +H QF   
Sbjct: 291  LFLSSLPVTANSHRAMETSHPHADGPQLSFRDERTKAYKKVVEVSRRIDEFRQHPQFRAF 350

Query: 178  AASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSD 348
            A+S +++RV DCLN SKLHS            S  N +P S+G   LKW+KEV+LSKRSD
Sbjct: 351  ASSYVSNRVMDCLNASKLHS------------STSNGEPISSGVSGLKWLKEVILSKRSD 398

Query: 349  NTFRMIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARR 528
              FR++M+GDPKI+L EIG+P  ++  L IS+HVN++N+EKL +SC LHL++K EL ARR
Sbjct: 399  YAFRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARR 458

Query: 529  KGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINP 708
             G+LI +   DQLQ+GD   R LE+GD+I++NR PSVH HSL+ALSVK+LP+  A+SINP
Sbjct: 459  DGQLISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFAISINP 518

Query: 709  LCCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAH 888
            LCCAPLLGDFDGDCLHG++PQS+ +RV             N QDGRSL+SL+HDSL AA+
Sbjct: 519  LCCAPLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDSLVAAY 578

Query: 889  LLMEGEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSR 1068
            LL   +VF SK+EMQ LEML P    FP+IIK P    P WTG+QLF M+LP  ++FS  
Sbjct: 579  LLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGIDFSVD 638

Query: 1069 SSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGL 1248
            S  + + +G+++ SP +SF  ++  S +FS MF+ YG +A ++L S QE+LCEYLTMRGL
Sbjct: 639  SKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYLTMRGL 698

Query: 1249 SVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSH 1428
            SVSL D+YL SD Y+R K+ +EV+F L+EA+ +C   +L+L+P I  ++ + DE ED S+
Sbjct: 699  SVSLSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDECEDSSY 758

Query: 1429 TLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXX 1608
            +++  +F      I +ASIA FKD+F D+Q  V +Y+S +NS+ +M+ +GSKGSL+K   
Sbjct: 759  SVSHYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSLSKLAQ 818

Query: 1609 XXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                     SA   PF IP +LSC  WN+ KA +
Sbjct: 819  QSLCLGLQLSASTFPFRIPQQLSCSWWNKQKALE 852


>ref|XP_020084502.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Ananas comosus]
          Length = 1240

 Score =  568 bits (1463), Expect = 0.0
 Identities = 286/559 (51%), Positives = 391/559 (69%), Gaps = 4/559 (0%)
 Frame = +1

Query: 46   VETIHTYSDGPRLS-HDKSTKAYRGVVDASKKIDEFHKHQQFGFVAASLIASRVHDCLNV 222
            +ET H ++DGP+LS  D+ TKAY+ VV+ S++IDEF +H QF   A+S +++RV DCLN 
Sbjct: 1    METSHPHADGPQLSFRDERTKAYKKVVEVSRRIDEFRQHPQFRAFASSYVSNRVMDCLNA 60

Query: 223  SKLHSNKASTGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSDNTFRMIMIGDPKIQL 393
            SKLHS            S  N +P S+G   LKW+KEV+LSKRSD  FR++M+GDPKI+L
Sbjct: 61   SKLHS------------STSNGEPISSGVSGLKWLKEVILSKRSDYAFRLVMVGDPKIKL 108

Query: 394  GEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKLIFIHSSDQLQV 573
             EIG+P  ++  L IS+HVN++N+EKL +SC LHL++K EL ARR G+LI +   DQLQ+
Sbjct: 109  DEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARRDGQLISVRKPDQLQI 168

Query: 574  GDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCAPLLGDFDGDCL 753
            GD   R LE+GD+I++NR PSVH HSL+ALSVK+LP+  A+SINPLCCAPLLGDFDGDCL
Sbjct: 169  GDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFAISINPLCCAPLLGDFDGDCL 228

Query: 754  HGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLMEGEVFFSKFEMQ 933
            HG++PQS+ +RV             N QDGRSL+SL+HDSL AA+LL   +VF SK+EMQ
Sbjct: 229  HGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDSLVAAYLLTGTDVFLSKYEMQ 288

Query: 934  QLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSIVEVCNGDLVPSP 1113
             LEML P    FP+IIK P    P WTG+QLF M+LP  ++FS  S  + + +G+++ SP
Sbjct: 289  HLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGIDFSVDSKKLHIIDGEVLSSP 348

Query: 1114 GVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVSLHDMYLTSDPYT 1293
             +SF  ++  S +FS MF+ YG +A ++L S QE+LCEYLTMRGLSVSL D+YL SD Y+
Sbjct: 349  QMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYLTMRGLSVSLSDLYLASDFYS 408

Query: 1294 RNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLNISNFARERRPIS 1473
            R K+ +EV+F L+EA+ +C   +L+L+P I  ++ + DE ED S++++  +F      I 
Sbjct: 409  RTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDECEDSSYSVSHYHFLSNNLQIR 468

Query: 1474 QASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXXXXXXXXSAKPLP 1653
            +ASIA FKD+F D+Q  V +Y+S +NS+ +M+ +GSKGSL+K            SA   P
Sbjct: 469  KASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSLSKLAQQSLCLGLQLSASTFP 528

Query: 1654 FSIPLKLSCPEWNQHKAFD 1710
            F IP +LSC  WN+ KA +
Sbjct: 529  FRIPQQLSCSWWNKQKALE 547


>gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas comosus]
          Length = 1556

 Score =  562 bits (1449), Expect = 0.0
 Identities = 284/574 (49%), Positives = 393/574 (68%), Gaps = 4/574 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLS-HDKSTKAYRGVVDASKKIDEFHKHQQFGFV 177
            +FLS +PV+ N  R +ET H ++DGP+LS  D+ TKAY+ VV+ S++IDEF +H QF   
Sbjct: 311  LFLSSLPVTANSHRAMETSHPHADGPQLSFRDERTKAYKKVVEVSRRIDEFRQHPQFRAF 370

Query: 178  AASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTG---LKWIKEVVLSKRSD 348
            A+S +++R+H                      S  N +P S+G   LKW+KEV+LSKRSD
Sbjct: 371  ASSYVSNRLHS---------------------STSNGEPISSGVSGLKWLKEVILSKRSD 409

Query: 349  NTFRMIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARR 528
              FR++M+GDPKI+L EIG+P  ++  L IS+HVN++N+EKL +SC LHL++K EL ARR
Sbjct: 410  YAFRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLLNKEELHARR 469

Query: 529  KGKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINP 708
             G+LI +   DQLQ+GD   R LE+GD+I++NR PSVH HSL+ALSVK+LP+  A+SINP
Sbjct: 470  DGQLISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFAISINP 529

Query: 709  LCCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAH 888
            LCCAPLLGDFDGDCLHG++PQS+ +RV             N QDGRSL+SL+HDSL AA+
Sbjct: 530  LCCAPLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDSLVAAY 589

Query: 889  LLMEGEVFFSKFEMQQLEMLFPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSR 1068
            LL   +VF SK+EMQ LEML P    FP+IIK P    P WTG+QLF M+LP  ++FS  
Sbjct: 590  LLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGIDFSVD 649

Query: 1069 SSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGL 1248
            S  + + +G+++ SP +SF  ++  S +FS MF+ YG +A ++L S QE+LCEYLTMRGL
Sbjct: 650  SKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYLTMRGL 709

Query: 1249 SVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSH 1428
            SVSL D+YL SD Y+R K+ +EV+F L+EA+ +C   +L+L+P I  ++ + DE ED S+
Sbjct: 710  SVSLSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDECEDSSY 769

Query: 1429 TLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXX 1608
            +++  +F      I +ASIA FKD+F D+Q  V +Y+S +NS+ +M+ +GSKGSL+K   
Sbjct: 770  SVSHYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSLSKLAQ 829

Query: 1609 XXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                     SA   PF IP +LSC  WN+ KA +
Sbjct: 830  QSLCLGLQLSASTFPFRIPQQLSCSWWNKQKALE 863


>gb|ACL30980.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-1 [Zea
            mays]
          Length = 871

 Score =  533 bits (1374), Expect = e-177
 Identities = 281/571 (49%), Positives = 380/571 (66%), Gaps = 1/571 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +   DG RL+ D  TKAY+ +VD S++ID++ +H  F  +A
Sbjct: 233  LFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLA 291

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
            +SL++SRV +CL  SKL+S KA     +  Y          G+KW+K+VVLSKRSDN FR
Sbjct: 292  SSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNVFR 341

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
             IM+GDPKI+L EIG+P+D+S +L +SEHV+++N +     C LHL++K EL  RR GKL
Sbjct: 342  SIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKL 401

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
            +F+  +DQL++GD   R L+DGDII++NR PSVH HSL+ALS KILP+ S VSINPLCC 
Sbjct: 402  MFLRKADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCT 461

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            P  GDFDGDCLHG++PQS+R+RV             N+QDGR+L+SLTHDSL AAHLL  
Sbjct: 462  PFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTS 521

Query: 901  GEVFFSKFEMQQLEML-FPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSI 1077
             +VF  K E+QQL+ML     +  PA+IK+   Q   WTG+QLFSM+LP  M FS  + +
Sbjct: 522  TDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTEL 581

Query: 1078 VEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVS 1257
              + +  L  S G S+   N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVS
Sbjct: 582  HIMDSEVLTCSLGSSWLQNN-TSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVS 640

Query: 1258 LHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLN 1437
            L D+Y+ SD Y+R KL + V  AL EA+ +    +++L+P    ++K HDETED+  T  
Sbjct: 641  LSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYR 698

Query: 1438 ISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXX 1617
             S+  +    + ++SI  FKD+FRDL  +V  ++S++NS+  M+ AGSKGS+ K      
Sbjct: 699  QSDCIQSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTA 758

Query: 1618 XXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                   A   PF IP +LSC  WN  K+ +
Sbjct: 759  CIGLQLPASKFPFRIPSQLSCISWNGQKSLN 789


>gb|ONM02908.1| DNA-directed RNA polymerase IV subunit 1 [Zea mays]
          Length = 951

 Score =  533 bits (1374), Expect = e-176
 Identities = 281/571 (49%), Positives = 380/571 (66%), Gaps = 1/571 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +   DG RL+ D  TKAY+ +VD S++ID++ +H  F  +A
Sbjct: 78   LFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLA 136

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
            +SL++SRV +CL  SKL+S KA     +  Y          G+KW+K+VVLSKRSDN FR
Sbjct: 137  SSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNVFR 186

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
             IM+GDPKI+L EIG+P+D+S +L +SEHV+++N +     C LHL++K EL  RR GKL
Sbjct: 187  SIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKL 246

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
            +F+  +DQL++GD   R L+DGDII++NR PSVH HSL+ALS KILP+ S VSINPLCC 
Sbjct: 247  MFLRKADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCT 306

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            P  GDFDGDCLHG++PQS+R+RV             N+QDGR+L+SLTHDSL AAHLL  
Sbjct: 307  PFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTS 366

Query: 901  GEVFFSKFEMQQLEML-FPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSI 1077
             +VF  K E+QQL+ML     +  PA+IK+   Q   WTG+QLFSM+LP  M FS  + +
Sbjct: 367  TDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTEL 426

Query: 1078 VEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVS 1257
              + +  L  S G S+   N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVS
Sbjct: 427  HIMDSEVLTCSLGSSWLQNN-TSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVS 485

Query: 1258 LHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLN 1437
            L D+Y+ SD Y+R KL + V  AL EA+ +    +++L+P    ++K HDETED+  T  
Sbjct: 486  LSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYR 543

Query: 1438 ISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXX 1617
             S+  +    + ++SI  FKD+FRDL  +V  ++S++NS+  M+ AGSKGS+ K      
Sbjct: 544  QSDCIQSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTA 603

Query: 1618 XXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                   A   PF IP +LSC  WN  K+ +
Sbjct: 604  CIGLQLPASKFPFRIPSQLSCISWNGQKSLN 634


>gb|ONM02909.1| DNA-directed RNA polymerase IV subunit 1, partial [Zea mays]
          Length = 999

 Score =  533 bits (1374), Expect = e-176
 Identities = 281/571 (49%), Positives = 380/571 (66%), Gaps = 1/571 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +   DG RL+ D  TKAY+ +VD S++ID++ +H  F  +A
Sbjct: 233  LFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLA 291

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
            +SL++SRV +CL  SKL+S KA     +  Y          G+KW+K+VVLSKRSDN FR
Sbjct: 292  SSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNVFR 341

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
             IM+GDPKI+L EIG+P+D+S +L +SEHV+++N +     C LHL++K EL  RR GKL
Sbjct: 342  SIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKL 401

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
            +F+  +DQL++GD   R L+DGDII++NR PSVH HSL+ALS KILP+ S VSINPLCC 
Sbjct: 402  MFLRKADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCT 461

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            P  GDFDGDCLHG++PQS+R+RV             N+QDGR+L+SLTHDSL AAHLL  
Sbjct: 462  PFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTS 521

Query: 901  GEVFFSKFEMQQLEML-FPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSI 1077
             +VF  K E+QQL+ML     +  PA+IK+   Q   WTG+QLFSM+LP  M FS  + +
Sbjct: 522  TDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTEL 581

Query: 1078 VEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVS 1257
              + +  L  S G S+   N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVS
Sbjct: 582  HIMDSEVLTCSLGSSWLQNN-TSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVS 640

Query: 1258 LHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLN 1437
            L D+Y+ SD Y+R KL + V  AL EA+ +    +++L+P    ++K HDETED+  T  
Sbjct: 641  LSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYR 698

Query: 1438 ISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXX 1617
             S+  +    + ++SI  FKD+FRDL  +V  ++S++NS+  M+ AGSKGS+ K      
Sbjct: 699  QSDCIQSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTA 758

Query: 1618 XXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                   A   PF IP +LSC  WN  K+ +
Sbjct: 759  CIGLQLPASKFPFRIPSQLSCISWNGQKSLN 789


>gb|ONM02906.1| DNA-directed RNA polymerase IV subunit 1, partial [Zea mays]
          Length = 1088

 Score =  533 bits (1374), Expect = e-175
 Identities = 281/571 (49%), Positives = 380/571 (66%), Gaps = 1/571 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +   DG RL+ D  TKAY+ +VD S++ID++ +H  F  +A
Sbjct: 233  LFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLA 291

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
            +SL++SRV +CL  SKL+S KA     +  Y          G+KW+K+VVLSKRSDN FR
Sbjct: 292  SSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNVFR 341

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
             IM+GDPKI+L EIG+P+D+S +L +SEHV+++N +     C LHL++K EL  RR GKL
Sbjct: 342  SIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKL 401

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
            +F+  +DQL++GD   R L+DGDII++NR PSVH HSL+ALS KILP+ S VSINPLCC 
Sbjct: 402  MFLRKADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCT 461

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            P  GDFDGDCLHG++PQS+R+RV             N+QDGR+L+SLTHDSL AAHLL  
Sbjct: 462  PFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTS 521

Query: 901  GEVFFSKFEMQQLEML-FPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSI 1077
             +VF  K E+QQL+ML     +  PA+IK+   Q   WTG+QLFSM+LP  M FS  + +
Sbjct: 522  TDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTEL 581

Query: 1078 VEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVS 1257
              + +  L  S G S+   N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVS
Sbjct: 582  HIMDSEVLTCSLGSSWLQNN-TSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVS 640

Query: 1258 LHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLN 1437
            L D+Y+ SD Y+R KL + V  AL EA+ +    +++L+P    ++K HDETED+  T  
Sbjct: 641  LSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYR 698

Query: 1438 ISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXX 1617
             S+  +    + ++SI  FKD+FRDL  +V  ++S++NS+  M+ AGSKGS+ K      
Sbjct: 699  QSDCIQSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTA 758

Query: 1618 XXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                   A   PF IP +LSC  WN  K+ +
Sbjct: 759  CIGLQLPASKFPFRIPSQLSCISWNGQKSLN 789


>ref|XP_022682777.1| DNA-directed RNA polymerase IV subunit 1 isoform X4 [Setaria italica]
          Length = 1361

 Score =  539 bits (1388), Expect = e-174
 Identities = 284/577 (49%), Positives = 389/577 (67%), Gaps = 7/577 (1%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +  SDG RL+ D  TKAY+ +VD SK+ID++ +H QF  +A
Sbjct: 143  LFLSCLPVTPNCHRVVEIGYGLSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLA 201

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDN 351
            +SL++SRV +CL  SKL             YSK+ D  +ST   G+KW+K+ VLSKRSDN
Sbjct: 202  SSLVSSRVSECLKSSKL-------------YSKKTDVETSTDTYGMKWLKDAVLSKRSDN 248

Query: 352  TFRMIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRK 531
             FR IM+GDPKI+L EIG+P++++  L +SEHV+++N+E +   C LHL++K EL  RR 
Sbjct: 249  AFRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRN 308

Query: 532  GKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPL 711
            GKL+FI  ++QL+VGD   R L+DGD+I++NR PSVH HSL+ALS KILP++S VSINPL
Sbjct: 309  GKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPL 368

Query: 712  CCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHL 891
            CC P LGDFDGDCLHG++PQS+R+R+             N+QDGRSL+SLTHDSL AAHL
Sbjct: 369  CCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHL 428

Query: 892  LMEGEVFFSKFEMQQLEMLFPCKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEF 1059
            L   +VF  + E+QQL+ML  C S      PAIIK+   +   WTG+Q FSM+LP  M F
Sbjct: 429  LTSTDVFLKESELQQLQML--CLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNF 486

Query: 1060 SSRSSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTM 1239
            S  S +  + +  L  S G S+  +N  +GLFS MF+ YG KA ++L S QEVLCE+LTM
Sbjct: 487  SCDSKLHIIDSEVLTCSSGSSW-LQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTM 545

Query: 1240 RGLSVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETED 1419
            RGLSVSL D+Y+ SD Y+R KL   V  AL+EA+ +    +++L+P    ++K HDETED
Sbjct: 546  RGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETED 605

Query: 1420 LSHTLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAK 1599
            +  T   S++ +    + ++SI  FKD+F DL  +V +++S++NS+  M+ AGSKGS+ K
Sbjct: 606  V--TYRQSDYIQSNLSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLK 663

Query: 1600 XXXXXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                         A   PF IP +LSC  WN+ K+ +
Sbjct: 664  YVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLN 700


>ref|XP_012701776.1| DNA-directed RNA polymerase IV subunit 1 isoform X3 [Setaria italica]
          Length = 1362

 Score =  539 bits (1388), Expect = e-174
 Identities = 284/577 (49%), Positives = 389/577 (67%), Gaps = 7/577 (1%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +  SDG RL+ D  TKAY+ +VD SK+ID++ +H QF  +A
Sbjct: 144  LFLSCLPVTPNCHRVVEIGYGLSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLA 202

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDN 351
            +SL++SRV +CL  SKL             YSK+ D  +ST   G+KW+K+ VLSKRSDN
Sbjct: 203  SSLVSSRVSECLKSSKL-------------YSKKTDVETSTDTYGMKWLKDAVLSKRSDN 249

Query: 352  TFRMIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRK 531
             FR IM+GDPKI+L EIG+P++++  L +SEHV+++N+E +   C LHL++K EL  RR 
Sbjct: 250  AFRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRN 309

Query: 532  GKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPL 711
            GKL+FI  ++QL+VGD   R L+DGD+I++NR PSVH HSL+ALS KILP++S VSINPL
Sbjct: 310  GKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPL 369

Query: 712  CCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHL 891
            CC P LGDFDGDCLHG++PQS+R+R+             N+QDGRSL+SLTHDSL AAHL
Sbjct: 370  CCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHL 429

Query: 892  LMEGEVFFSKFEMQQLEMLFPCKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEF 1059
            L   +VF  + E+QQL+ML  C S      PAIIK+   +   WTG+Q FSM+LP  M F
Sbjct: 430  LTSTDVFLKESELQQLQML--CLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNF 487

Query: 1060 SSRSSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTM 1239
            S  S +  + +  L  S G S+  +N  +GLFS MF+ YG KA ++L S QEVLCE+LTM
Sbjct: 488  SCDSKLHIIDSEVLTCSSGSSW-LQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTM 546

Query: 1240 RGLSVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETED 1419
            RGLSVSL D+Y+ SD Y+R KL   V  AL+EA+ +    +++L+P    ++K HDETED
Sbjct: 547  RGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETED 606

Query: 1420 LSHTLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAK 1599
            +  T   S++ +    + ++SI  FKD+F DL  +V +++S++NS+  M+ AGSKGS+ K
Sbjct: 607  V--TYRQSDYIQSNLSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLK 664

Query: 1600 XXXXXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                         A   PF IP +LSC  WN+ K+ +
Sbjct: 665  YVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLN 701


>ref|XP_022682776.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Setaria italica]
          Length = 1450

 Score =  539 bits (1388), Expect = e-173
 Identities = 284/577 (49%), Positives = 389/577 (67%), Gaps = 7/577 (1%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +  SDG RL+ D  TKAY+ +VD SK+ID++ +H QF  +A
Sbjct: 232  LFLSCLPVTPNCHRVVEIGYGLSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLA 290

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDN 351
            +SL++SRV +CL  SKL             YSK+ D  +ST   G+KW+K+ VLSKRSDN
Sbjct: 291  SSLVSSRVSECLKSSKL-------------YSKKTDVETSTDTYGMKWLKDAVLSKRSDN 337

Query: 352  TFRMIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRK 531
             FR IM+GDPKI+L EIG+P++++  L +SEHV+++N+E +   C LHL++K EL  RR 
Sbjct: 338  AFRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRN 397

Query: 532  GKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPL 711
            GKL+FI  ++QL+VGD   R L+DGD+I++NR PSVH HSL+ALS KILP++S VSINPL
Sbjct: 398  GKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPL 457

Query: 712  CCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHL 891
            CC P LGDFDGDCLHG++PQS+R+R+             N+QDGRSL+SLTHDSL AAHL
Sbjct: 458  CCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHL 517

Query: 892  LMEGEVFFSKFEMQQLEMLFPCKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEF 1059
            L   +VF  + E+QQL+ML  C S      PAIIK+   +   WTG+Q FSM+LP  M F
Sbjct: 518  LTSTDVFLKESELQQLQML--CLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNF 575

Query: 1060 SSRSSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTM 1239
            S  S +  + +  L  S G S+  +N  +GLFS MF+ YG KA ++L S QEVLCE+LTM
Sbjct: 576  SCDSKLHIIDSEVLTCSSGSSW-LQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTM 634

Query: 1240 RGLSVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETED 1419
            RGLSVSL D+Y+ SD Y+R KL   V  AL+EA+ +    +++L+P    ++K HDETED
Sbjct: 635  RGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETED 694

Query: 1420 LSHTLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAK 1599
            +  T   S++ +    + ++SI  FKD+F DL  +V +++S++NS+  M+ AGSKGS+ K
Sbjct: 695  V--TYRQSDYIQSNLSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLK 752

Query: 1600 XXXXXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                         A   PF IP +LSC  WN+ K+ +
Sbjct: 753  YVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLN 789


>ref|XP_004970757.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Setaria italica]
 ref|XP_022682775.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Setaria italica]
          Length = 1451

 Score =  539 bits (1388), Expect = e-173
 Identities = 284/577 (49%), Positives = 389/577 (67%), Gaps = 7/577 (1%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +  SDG RL+ D  TKAY+ +VD SK+ID++ +H QF  +A
Sbjct: 233  LFLSCLPVTPNCHRVVEIGYGLSDG-RLTFDDRTKAYKRMVDVSKRIDDYRQHPQFSVLA 291

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSST---GLKWIKEVVLSKRSDN 351
            +SL++SRV +CL  SKL             YSK+ D  +ST   G+KW+K+ VLSKRSDN
Sbjct: 292  SSLVSSRVSECLKSSKL-------------YSKKTDVETSTDTYGMKWLKDAVLSKRSDN 338

Query: 352  TFRMIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRK 531
             FR IM+GDPKI+L EIG+P++++  L +SEHV+++N+E +   C LHL++K EL  RR 
Sbjct: 339  AFRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLAKEELLIRRN 398

Query: 532  GKLIFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPL 711
            GKL+FI  ++QL+VGD   R L+DGD+I++NR PSVH HSL+ALS KILP++S VSINPL
Sbjct: 399  GKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSVVSINPL 458

Query: 712  CCAPLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHL 891
            CC P LGDFDGDCLHG++PQS+R+R+             N+QDGRSL+SLTHDSL AAHL
Sbjct: 459  CCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDSLAAAHL 518

Query: 892  LMEGEVFFSKFEMQQLEMLFPCKS----QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEF 1059
            L   +VF  + E+QQL+ML  C S      PAIIK+   +   WTG+Q FSM+LP  M F
Sbjct: 519  LTSTDVFLKESELQQLQML--CLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPSGMNF 576

Query: 1060 SSRSSIVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTM 1239
            S  S +  + +  L  S G S+  +N  +GLFS MF+ YG KA ++L S QEVLCE+LTM
Sbjct: 577  SCDSKLHIIDSEVLTCSSGSSW-LQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCEFLTM 635

Query: 1240 RGLSVSLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETED 1419
            RGLSVSL D+Y+ SD Y+R KL   V  AL+EA+ +    +++L+P    ++K HDETED
Sbjct: 636  RGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHDETED 695

Query: 1420 LSHTLNISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAK 1599
            +  T   S++ +    + ++SI  FKD+F DL  +V +++S++NS+  M+ AGSKGS+ K
Sbjct: 696  V--TYRQSDYIQSNLSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKGSMLK 753

Query: 1600 XXXXXXXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                         A   PF IP +LSC  WN+ K+ +
Sbjct: 754  YVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLN 790


>gb|PNT71744.1| hypothetical protein BRADI_2g34876v3 [Brachypodium distachyon]
          Length = 1051

 Score =  526 bits (1354), Expect = e-172
 Identities = 271/572 (47%), Positives = 374/572 (65%), Gaps = 2/572 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PN  RV E  + +SDGP L++D  TKAY+  VDASKKID++ +H QF  +A
Sbjct: 233  LFLSCLPVTPNRHRVAEMPYRFSDGPSLAYDDRTKAYKRTVDASKKIDDYRQHPQFSVLA 292

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
            +S + SRV +CL  SKL+S K      +  Y     +  S G KW+K+ +LSKRSD  FR
Sbjct: 293  SSFVTSRVMECLQSSKLYSKKTDKESSTDSYGTSVKKNDSYGTKWLKDAILSKRSDYAFR 352

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
             IM+GDPKI+L EIG+P D++  L++ EHV+ +N + +   C LHL++K  L ARR GKL
Sbjct: 353  SIMVGDPKIRLHEIGIPMDLA-DLFVPEHVSIYNFKSINLKCNLHLLAKELLIARRNGKL 411

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
            I++   +QL++GD + R L+DGD+I+VNR PSVH HSL+ALS K+LPV+S V+INPL CA
Sbjct: 412  IYVRKENQLEIGDIVYRPLQDGDLILVNRPPSVHQHSLIALSAKLLPVQSVVAINPLNCA 471

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            PL GDFDGDCLHG+VPQS+ +RV             N+QDGRSL+SLTHDSL AAHLL  
Sbjct: 472  PLSGDFDGDCLHGYVPQSIGSRVELGELVSLSHQLLNMQDGRSLVSLTHDSLAAAHLLTS 531

Query: 901  GEVFFSKFEMQQLEMLFPCKS--QFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSS 1074
              V  +K E QQL+ML    S    P++IK+   Q P WTG+QLF M+LP  M FS    
Sbjct: 532  SGVLLNKTEFQQLQMLCVSLSPTPVPSVIKSINPQGPLWTGKQLFGMLLPSGMNFSPDPK 591

Query: 1075 IVEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSV 1254
            +  + + +++   G SF  +N  SGLFS +F+ YG +A  +L S Q++LCE+LTMRGLSV
Sbjct: 592  L-HIKDSEVLACSGGSFWLQNNTSGLFSVLFKQYGGEALEFLSSAQDMLCEFLTMRGLSV 650

Query: 1255 SLHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTL 1434
            SL D+YL SD Y+R K  +EV+ AL+EA+ +    +++L P     +K +D+ +DLS + 
Sbjct: 651  SLSDIYLFSDHYSRRKFAEEVNLALDEAEEAFRVTQILLSPNFIPHLKCYDDCDDLSDSY 710

Query: 1435 NISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXX 1614
              S+F +   PI ++SI  FK +F DL  +V  +   +NS+  M+ AGSKGS+ K     
Sbjct: 711  EQSDFVQSNLPIIKSSIMAFKSVFSDLLKMVQQHTPKDNSMMAMINAGSKGSMLKFVQQA 770

Query: 1615 XXXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                    A   PF IP +L+C  WN+HK+ D
Sbjct: 771  ACVGLQLPAGKFPFRIPSELTCASWNRHKSLD 802


>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
            mays]
          Length = 1444

 Score =  533 bits (1374), Expect = e-171
 Identities = 281/571 (49%), Positives = 380/571 (66%), Gaps = 1/571 (0%)
 Frame = +1

Query: 1    IFLSCIPVSPNCQRVVETIHTYSDGPRLSHDKSTKAYRGVVDASKKIDEFHKHQQFGFVA 180
            +FLSC+PV+PNC RVVE  +   DG RL+ D  TKAY+ +VD S++ID++ +H  F  +A
Sbjct: 233  LFLSCLPVTPNCHRVVEIGYGLPDG-RLTFDDRTKAYKRMVDVSRRIDDYRQHPHFSVLA 291

Query: 181  ASLIASRVHDCLNVSKLHSNKASTGDHSKYYSKQNDQPSSTGLKWIKEVVLSKRSDNTFR 360
            +SL++SRV +CL  SKL+S KA     +  Y          G+KW+K+VVLSKRSDN FR
Sbjct: 292  SSLVSSRVSECLKSSKLYSKKADGETSTDTY----------GMKWLKDVVLSKRSDNVFR 341

Query: 361  MIMIGDPKIQLGEIGLPQDVSRTLYISEHVNAHNVEKLKSSCRLHLISKPELKARRKGKL 540
             IM+GDPKI+L EIG+P+D+S +L +SEHV+++N +     C LHL++K EL  RR GKL
Sbjct: 342  SIMVGDPKIKLWEIGIPEDLSSSLVVSEHVSSYNFQSTNLKCNLHLLAKQELFIRRNGKL 401

Query: 541  IFIHSSDQLQVGDTLNRSLEDGDIIMVNRNPSVHPHSLLALSVKILPVESAVSINPLCCA 720
            +F+  +DQL++GD   R L+DGDII++NR PSVH HSL+ALS KILP+ S VSINPLCC 
Sbjct: 402  MFLRKADQLEIGDIAYRPLQDGDIILINRPPSVHQHSLIALSAKILPIHSVVSINPLCCT 461

Query: 721  PLLGDFDGDCLHGFVPQSVRARVXXXXXXXXXXXXFNVQDGRSLLSLTHDSLTAAHLLME 900
            P  GDFDGDCLHG++PQS+R+RV             N+QDGR+L+SLTHDSL AAHLL  
Sbjct: 462  PFAGDFDGDCLHGYIPQSIRSRVELEELVSLHNQLLNMQDGRNLVSLTHDSLAAAHLLTS 521

Query: 901  GEVFFSKFEMQQLEML-FPCKSQFPAIIKAPLVQMPRWTGRQLFSMMLPLNMEFSSRSSI 1077
             +VF  K E+QQL+ML     +  PA+IK+   Q   WTG+QLFSM+LP  M FS  + +
Sbjct: 522  TDVFLKKSELQQLQMLCLSVSTPAPAVIKSMNFQGSLWTGKQLFSMLLPSGMNFSCDTEL 581

Query: 1078 VEVCNGDLVPSPGVSFSSRNFISGLFSRMFECYGSKANNYLFSFQEVLCEYLTMRGLSVS 1257
              + +  L  S G S+   N  SGLFS MF+ YG KA ++L S QEVLCE+LTMRGLSVS
Sbjct: 582  HIMDSEVLTCSLGSSWLQNN-TSGLFSVMFKQYGCKALDFLSSAQEVLCEFLTMRGLSVS 640

Query: 1258 LHDMYLTSDPYTRNKLIDEVSFALEEAKSSCHFNELMLEPEIGIIIKAHDETEDLSHTLN 1437
            L D+Y+ SD Y+R KL + V  AL EA+ +    +++L+P    ++K HDETED+  T  
Sbjct: 641  LSDLYMFSDHYSRRKLAEGVKLALYEAEEAFRVKKILLDPINIPVLKCHDETEDV--TYR 698

Query: 1438 ISNFARERRPISQASIAKFKDLFRDLQSVVPYYISSENSLFTMMYAGSKGSLAKXXXXXX 1617
             S+  +    + ++SI  FKD+FRDL  +V  ++S++NS+  M+ AGSKGS+ K      
Sbjct: 699  QSDCIQSNPSVIRSSIMAFKDVFRDLLKMVQQHVSNDNSMMVMINAGSKGSMLKYAQQTA 758

Query: 1618 XXXXXXSAKPLPFSIPLKLSCPEWNQHKAFD 1710
                   A   PF IP +LSC  WN  K+ +
Sbjct: 759  CIGLQLPASKFPFRIPSQLSCISWNGQKSLN 789