BLASTX nr result

ID: Ophiopogon24_contig00020027 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00020027
         (428 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN63667.1| hypothetical protein VITISV_013184 [Vitis vinifera]    60   1e-07

>emb|CAN63667.1| hypothetical protein VITISV_013184 [Vitis vinifera]
          Length = 530

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 12/114 (10%)
 Frame = +2

Query: 104 SDWVDSENFNSTVSIASI--------GWSHLPPELVEKIAGNLDEIADRVRLGAVCKPWQ 259
           SD++  +NF+ST S + +        GW+ LP +L+E I  NL  I D +R GAVC PW 
Sbjct: 106 SDFLAQKNFDSTSSSSLLDWQRMEYSGWAWLPDDLLEPILNNLASIVDSIRFGAVCTPWH 165

Query: 260 SASKSIXXXXXXXXXXXXGDPDDSW----RRLNRNEVQSFFSISDKRIYKLLLP 409
           S +                 P   W     + N  + +SF+SI+ +++ K  LP
Sbjct: 166 SLAVKSFQRLPVNQRPHLQPPPLPWLMVLSKPNSKDSRSFYSITHQKLSKFHLP 219


Top