BLASTX nr result
ID: Ophiopogon24_contig00019503
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00019503
(965 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PKA66368.1| Mediator of RNA polymerase II transcription subun... 169 1e-45
ref|XP_020685938.1| mediator of RNA polymerase II transcription ... 164 8e-44
ref|XP_009409986.1| PREDICTED: mediator of RNA polymerase II tra... 162 6e-43
ref|XP_020582002.1| mediator of RNA polymerase II transcription ... 160 6e-42
ref|XP_020582001.1| mediator of RNA polymerase II transcription ... 160 8e-42
ref|XP_013611601.1| PREDICTED: mediator of RNA polymerase II tra... 159 9e-42
ref|XP_002322847.1| hydroxyproline-rich glycoprotein [Populus tr... 158 1e-41
ref|XP_011048424.1| PREDICTED: mediator of RNA polymerase II tra... 158 2e-41
ref|XP_011048421.1| PREDICTED: mediator of RNA polymerase II tra... 158 2e-41
ref|XP_008811544.1| PREDICTED: mediator of RNA polymerase II tra... 158 3e-41
ref|XP_015612431.1| PREDICTED: mediator of RNA polymerase II tra... 157 4e-41
gb|EAZ09918.1| hypothetical protein OsI_32214 [Oryza sativa Indi... 157 4e-41
gb|KFK24735.1| hypothetical protein AALP_AA8G017700 [Arabis alpina] 157 7e-41
gb|OAY77700.1| Mediator of RNA polymerase II transcription subun... 156 8e-41
ref|XP_012085966.1| mediator of RNA polymerase II transcription ... 156 9e-41
ref|XP_013668306.1| mediator of RNA polymerase II transcription ... 156 9e-41
ref|XP_009122747.1| PREDICTED: mediator of RNA polymerase II tra... 156 9e-41
ref|XP_010490754.1| PREDICTED: mediator of RNA polymerase II tra... 156 1e-40
gb|AAP40461.1| unknown protein [Arabidopsis thaliana] 156 1e-40
ref|NP_195905.1| hydroxyproline-rich glycoprotein family protein... 156 1e-40
>gb|PKA66368.1| Mediator of RNA polymerase II transcription subunit 4 [Apostasia
shenzhenica]
Length = 405
Score = 169 bits (427), Expect = 1e-45
Identities = 92/147 (62%), Positives = 109/147 (74%), Gaps = 14/147 (9%)
Frame = -3
Query: 882 TKEILSLFHSLQTQLFESVAELQEILDLQDSKNKLARDIKAKDSALLAFAKKIKESELVL 703
TKE+LSLF SLQTQLFE+VAELQEILDLQDSK K+AR+++AKDSALLAF +K+ ++E VL
Sbjct: 117 TKEVLSLFTSLQTQLFEAVAELQEILDLQDSKAKIAREVRAKDSALLAFTRKLHDAEQVL 176
Query: 702 DRLVDDYAEYQ-----------DRDL---LHPNLDLNEVLAYAHKISYTTFAPPEHXXXX 565
DRL+DDY++Y+ D D LH +LDLNE+LAYAH+ISYTTFAPPEH
Sbjct: 177 DRLLDDYSDYRRDPKRSRGEPGDPDYQSSLHSSLDLNEILAYAHRISYTTFAPPEHGAGL 236
Query: 564 XXXXXXXXXXPQDNEMRASQLYRFADL 484
PQDNEMRASQLY ADL
Sbjct: 237 TPLRGALPPAPQDNEMRASQLYHLADL 263
>ref|XP_020685938.1| mediator of RNA polymerase II transcription subunit 4 [Dendrobium
catenatum]
gb|PKU84119.1| Mediator of RNA polymerase II transcription subunit 4 [Dendrobium
catenatum]
Length = 421
Score = 164 bits (416), Expect = 8e-44
Identities = 90/147 (61%), Positives = 105/147 (71%), Gaps = 14/147 (9%)
Frame = -3
Query: 882 TKEILSLFHSLQTQLFESVAELQEILDLQDSKNKLARDIKAKDSALLAFAKKIKESELVL 703
TKE+LSLF S QTQLFESVAELQEILDLQ+SK K+AR+I+ KDS LLAF +K+ E+E VL
Sbjct: 128 TKEVLSLFTSFQTQLFESVAELQEILDLQESKLKIAREIRNKDSTLLAFTRKLHEAEQVL 187
Query: 702 DRLVDDYAEYQD--------------RDLLHPNLDLNEVLAYAHKISYTTFAPPEHXXXX 565
D L+DDY++Y+ + LH +LDLNEVLAYAH+ISYTTFAPPEH
Sbjct: 188 DHLLDDYSDYRRDPKRLKGEPGEADYQSSLHSSLDLNEVLAYAHRISYTTFAPPEHGAGM 247
Query: 564 XXXXXXXXXXPQDNEMRASQLYRFADL 484
PQDNEMRASQLY FADL
Sbjct: 248 APLRGALPPAPQDNEMRASQLYHFADL 274
>ref|XP_009409986.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Musa acuminata subsp. malaccensis]
Length = 419
Score = 162 bits (410), Expect = 6e-43
Identities = 95/178 (53%), Positives = 117/178 (65%), Gaps = 18/178 (10%)
Frame = -3
Query: 963 AYRGALPSF---LXXXXXXXXXXXXXXXXSTKEILSLFHSLQTQLFESVAELQEILDLQD 793
+YRG P+F L STK+++SLF +LQTQLFE+VAELQEILDLQD
Sbjct: 98 SYRGNPPNFSKELNSSAAAATATAAPVPASTKDLMSLFTTLQTQLFEAVAELQEILDLQD 157
Query: 792 SKNKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY----------QDRD-----L 658
++ K+AR+I+AKDSALL+F KKI+E+E VLD L+DDY+ Y QD +
Sbjct: 158 ARVKVAREIRAKDSALLSFTKKIREAEQVLDHLIDDYSNYRRDPKRPRIEQDGESNYSMS 217
Query: 657 LHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
LH +LDL E+L+YAH+ISYTTFAPPEH PQDNEMRASQLY FADL
Sbjct: 218 LHSSLDLEEILSYAHRISYTTFAPPEHGAGLAPLRGALPPAPQDNEMRASQLYHFADL 275
>ref|XP_020582002.1| mediator of RNA polymerase II transcription subunit 4 isoform X2
[Phalaenopsis equestris]
Length = 432
Score = 160 bits (404), Expect = 6e-42
Identities = 87/147 (59%), Positives = 106/147 (72%), Gaps = 14/147 (9%)
Frame = -3
Query: 882 TKEILSLFHSLQTQLFESVAELQEILDLQDSKNKLARDIKAKDSALLAFAKKIKESELVL 703
TKE+LSLF S QTQLFE+VAELQEILDLQDSK +AR+++ KD+ALL+F +K+ ++E VL
Sbjct: 139 TKEVLSLFTSFQTQLFEAVAELQEILDLQDSKVNIAREVRNKDTALLSFTRKLHDAEQVL 198
Query: 702 DRLVDDYAEYQ-----------DRDL---LHPNLDLNEVLAYAHKISYTTFAPPEHXXXX 565
DRL+DDY++Y+ D D LH +LDLNE+LA AH+ISYTTFAPPEH
Sbjct: 199 DRLLDDYSDYRRDPKRIKGEPGDADYQSSLHSSLDLNEILALAHRISYTTFAPPEHGAGL 258
Query: 564 XXXXXXXXXXPQDNEMRASQLYRFADL 484
PQDNEMRASQLY FADL
Sbjct: 259 APLRGALPPAPQDNEMRASQLYHFADL 285
>ref|XP_020582001.1| mediator of RNA polymerase II transcription subunit 4 isoform X1
[Phalaenopsis equestris]
Length = 448
Score = 160 bits (404), Expect = 8e-42
Identities = 87/147 (59%), Positives = 106/147 (72%), Gaps = 14/147 (9%)
Frame = -3
Query: 882 TKEILSLFHSLQTQLFESVAELQEILDLQDSKNKLARDIKAKDSALLAFAKKIKESELVL 703
TKE+LSLF S QTQLFE+VAELQEILDLQDSK +AR+++ KD+ALL+F +K+ ++E VL
Sbjct: 139 TKEVLSLFTSFQTQLFEAVAELQEILDLQDSKVNIAREVRNKDTALLSFTRKLHDAEQVL 198
Query: 702 DRLVDDYAEYQ-----------DRDL---LHPNLDLNEVLAYAHKISYTTFAPPEHXXXX 565
DRL+DDY++Y+ D D LH +LDLNE+LA AH+ISYTTFAPPEH
Sbjct: 199 DRLLDDYSDYRRDPKRIKGEPGDADYQSSLHSSLDLNEILALAHRISYTTFAPPEHGAGL 258
Query: 564 XXXXXXXXXXPQDNEMRASQLYRFADL 484
PQDNEMRASQLY FADL
Sbjct: 259 APLRGALPPAPQDNEMRASQLYHFADL 285
>ref|XP_013611601.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Brassica oleracea var. oleracea]
ref|XP_013747655.1| mediator of RNA polymerase II transcription subunit 4-like
[Brassica napus]
Length = 421
Score = 159 bits (402), Expect = 9e-42
Identities = 94/177 (53%), Positives = 111/177 (62%), Gaps = 17/177 (9%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS--TKEILSLFHSLQTQLFESVAELQEILDLQDS 790
A+RG+LPSFL TKEILS F+SLQTQLFE+V ELQEILDLQD+
Sbjct: 115 AFRGSLPSFLTSSHSLPPPPPLEIPNPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDA 174
Query: 789 KNKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY---------------QDRDLL 655
K KLAR+IK+KDS+LLAFA K+KE+E VLD LVDDY++Y + +
Sbjct: 175 KQKLAREIKSKDSSLLAFANKLKEAERVLDMLVDDYSDYRKPKRTKTEDEENDNESSTTV 234
Query: 654 HPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
L L ++LAYAHKISYTTFAPPE PQD +MRASQLY FADL
Sbjct: 235 SSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYAFADL 291
>ref|XP_002322847.1| hydroxyproline-rich glycoprotein [Populus trichocarpa]
gb|PNS98565.1| hypothetical protein POPTR_016G084200v3 [Populus trichocarpa]
Length = 397
Score = 158 bits (400), Expect = 1e-41
Identities = 93/175 (53%), Positives = 113/175 (64%), Gaps = 15/175 (8%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXSTKEILSLFHSLQTQLFESVAELQEILDLQDSKN 784
AYRG LP+FL TKEI+SLF SLQTQLFESVAELQEILDLQDSK
Sbjct: 96 AYRGTLPTFLPSQSQSLDEPTPTS---TKEIISLFTSLQTQLFESVAELQEILDLQDSKQ 152
Query: 783 KLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEYQDRDLLHPN-------------- 646
+++++IK+KDSALL FA K+KE+E VLD LVDDYA+Y+ R + PN
Sbjct: 153 RISQEIKSKDSALLNFANKLKEAERVLDILVDDYADYRRRRPIPPNEEEENATNTTTVAS 212
Query: 645 -LDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
L L+++L+YAH+ISYTTFAPPE PQ+ +MRASQLY FA L
Sbjct: 213 QLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFAHL 267
>ref|XP_011048424.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Populus euphratica]
ref|XP_011048425.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Populus euphratica]
Length = 398
Score = 158 bits (399), Expect = 2e-41
Identities = 93/175 (53%), Positives = 113/175 (64%), Gaps = 15/175 (8%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXSTKEILSLFHSLQTQLFESVAELQEILDLQDSKN 784
AYRG LP+FL TKEI+SLF SLQTQLFESVAELQEILDLQDSK
Sbjct: 97 AYRGTLPTFLPSQSQSLDEPTPSS---TKEIISLFTSLQTQLFESVAELQEILDLQDSKQ 153
Query: 783 KLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEYQDRDLLHPN-------------- 646
+++++IK+KDSALL FA K+KE+E VLD LVDDYA+Y+ R + PN
Sbjct: 154 RVSQEIKSKDSALLNFANKLKEAERVLDILVDDYADYRRRRPIPPNEDEENATNTTTVAS 213
Query: 645 -LDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
L L+++L+YAH+ISYTTFAPPE PQ+ +MRASQLY FA L
Sbjct: 214 QLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFAHL 268
>ref|XP_011048421.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Populus euphratica]
ref|XP_011048422.1| PREDICTED: mediator of RNA polymerase II transcription subunit
4-like [Populus euphratica]
Length = 398
Score = 158 bits (399), Expect = 2e-41
Identities = 93/175 (53%), Positives = 113/175 (64%), Gaps = 15/175 (8%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXSTKEILSLFHSLQTQLFESVAELQEILDLQDSKN 784
AYRG LP+FL TKEI+SLF SLQTQLFESVAELQEILDLQDSK
Sbjct: 97 AYRGTLPTFLPSQSQSLDEPTPSS---TKEIISLFTSLQTQLFESVAELQEILDLQDSKQ 153
Query: 783 KLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEYQDRDLLHPN-------------- 646
+++++IK+KDSALL FA K+KE+E VLD LVDDYA+Y+ R + PN
Sbjct: 154 RVSQEIKSKDSALLNFANKLKEAERVLDILVDDYADYRRRRPIPPNEDEENATNTTTVAS 213
Query: 645 -LDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
L L+++L+YAH+ISYTTFAPPE PQ+ +MRASQLY FA L
Sbjct: 214 QLKLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYNFAHL 268
>ref|XP_008811544.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Phoenix dactylifera]
ref|XP_008811562.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Phoenix dactylifera]
ref|XP_008811584.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Phoenix dactylifera]
ref|XP_008811592.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Phoenix dactylifera]
ref|XP_008811602.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Phoenix dactylifera]
Length = 437
Score = 158 bits (399), Expect = 3e-41
Identities = 94/183 (51%), Positives = 118/183 (64%), Gaps = 23/183 (12%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXST-------KEILSLFHSLQTQLFESVAELQEIL 805
++RG+LPSFL ST KE+++LF +LQTQ+FESVAELQEIL
Sbjct: 109 SFRGSLPSFLPSASASATPLSSSCSSSTSAAPSSAKEVVALFTALQTQIFESVAELQEIL 168
Query: 804 DLQDSKNKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEYQ--------DRD---- 661
DLQDS K+A +I+AKDS LL+F KKI+E+E VLD+LVDDY++Y+ D+D
Sbjct: 169 DLQDSCLKIAGEIRAKDSTLLSFTKKIREAEQVLDQLVDDYSDYRRDPKRPKSDKDSFDS 228
Query: 660 ----LLHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRF 493
L +LDL E+L+YAH+ISYTTFAPPEH PQ+NEMRASQLY F
Sbjct: 229 GYSTSLRSSLDLQEILSYAHRISYTTFAPPEHGAGLAPLRGALPPAPQENEMRASQLYHF 288
Query: 492 ADL 484
ADL
Sbjct: 289 ADL 291
>ref|XP_015612431.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Oryza sativa Japonica Group]
dbj|BAD46576.1| unknown protein [Oryza sativa Japonica Group]
dbj|BAF25723.1| Os09g0540500 [Oryza sativa Japonica Group]
gb|EAZ45517.1| hypothetical protein OsJ_30176 [Oryza sativa Japonica Group]
dbj|BAH00146.1| unnamed protein product [Oryza sativa Japonica Group]
dbj|BAT09195.1| Os09g0540500 [Oryza sativa Japonica Group]
Length = 414
Score = 157 bits (397), Expect = 4e-41
Identities = 93/182 (51%), Positives = 117/182 (64%), Gaps = 22/182 (12%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXSTKEILSLFHSLQTQLFESVAELQEILDLQDSKN 784
AYRG+LP+FL STKE LSL ++LQTQLFE+VAELQE LDLQD++
Sbjct: 98 AYRGSLPTFLPSPSSAPPPPLPAPISSTKEALSLLNTLQTQLFEAVAELQETLDLQDARA 157
Query: 783 KLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEYQ-------------------DRD 661
+LAR+ +AKD+++LAFAKK++E+ VLDRLVDDYA+Y+ D D
Sbjct: 158 RLAREARAKDASILAFAKKLREAHHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGD 217
Query: 660 L---LHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFA 490
LH L+L++VL YAH+ISYTTFAPPEH PQ+NEMR SQLY+FA
Sbjct: 218 FGASLHSKLNLDDVLTYAHRISYTTFAPPEH-GAGLPLRGALPPAPQENEMRMSQLYQFA 276
Query: 489 DL 484
DL
Sbjct: 277 DL 278
>gb|EAZ09918.1| hypothetical protein OsI_32214 [Oryza sativa Indica Group]
Length = 414
Score = 157 bits (397), Expect = 4e-41
Identities = 93/182 (51%), Positives = 117/182 (64%), Gaps = 22/182 (12%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXSTKEILSLFHSLQTQLFESVAELQEILDLQDSKN 784
AYRG+LP+FL STKE LSL ++LQTQLFE+VAELQE LDLQD++
Sbjct: 98 AYRGSLPTFLPSPSSAPPPPLPAPISSTKEALSLLNTLQTQLFEAVAELQETLDLQDARA 157
Query: 783 KLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEYQ-------------------DRD 661
+LAR+ +AKD+++LAFAKK++E+ VLDRLVDDYA+Y+ D D
Sbjct: 158 RLAREARAKDASILAFAKKLREAHHVLDRLVDDYADYRRDPKRPRGAAAADDPEPVSDGD 217
Query: 660 L---LHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFA 490
LH L+L++VL YAH+ISYTTFAPPEH PQ+NEMR SQLY+FA
Sbjct: 218 FGASLHSKLNLDDVLTYAHRISYTTFAPPEH-GAGLPLRGALPPAPQENEMRMSQLYQFA 276
Query: 489 DL 484
DL
Sbjct: 277 DL 278
>gb|KFK24735.1| hypothetical protein AALP_AA8G017700 [Arabis alpina]
Length = 419
Score = 157 bits (396), Expect = 7e-41
Identities = 94/181 (51%), Positives = 114/181 (62%), Gaps = 21/181 (11%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS-TKEILSLFHSLQTQLFESVAELQEILDLQDSK 787
++RG+LPSFL S TKEILS F+SLQTQLFESV ELQEILDLQD+K
Sbjct: 109 SFRGSLPSFLSSHSLPPPPPLENPNPSSTKEILSQFNSLQTQLFESVTELQEILDLQDAK 168
Query: 786 NKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY------------QDRDL----- 658
K+AR++K+KDS+LLAFA K+KE+E VLD LVDDY++Y +D D+
Sbjct: 169 QKIAREVKSKDSSLLAFANKLKEAERVLDMLVDDYSDYRKPKRSKTVIEEEDNDIDSSSS 228
Query: 657 ---LHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFAD 487
+ L L ++LAYAHKISYTTFAPPE PQD +MRAS LY FAD
Sbjct: 229 STTVSSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASHLYTFAD 288
Query: 486 L 484
L
Sbjct: 289 L 289
>gb|OAY77700.1| Mediator of RNA polymerase II transcription subunit 4 [Ananas
comosus]
Length = 393
Score = 156 bits (394), Expect = 8e-41
Identities = 93/178 (52%), Positives = 110/178 (61%), Gaps = 18/178 (10%)
Frame = -3
Query: 963 AYRGALPSF--LXXXXXXXXXXXXXXXXSTKEILSLFHSLQTQLFESVAELQEILDLQDS 790
+YRG+ P+F STKE+L+L SLQT LFESVAELQEILDLQDS
Sbjct: 65 SYRGSFPAFPPSSSSSSTASPTPISLPSSTKELLALATSLQTHLFESVAELQEILDLQDS 124
Query: 789 KNKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEYQDRDL---------------- 658
KLARD++AKD+ LLA A K +++ VLD+L+DDYA+Y+ R L
Sbjct: 125 AAKLARDVRAKDATLLALAHKTRDAHQVLDQLLDDYADYRRRPLKKARADAGAAPEPEFA 184
Query: 657 LHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
L LDL E+LAYAH+ISYTTFAPPEH PQDNEMRASQLY FADL
Sbjct: 185 LRSGLDLQEILAYAHRISYTTFAPPEHGAGLAPLRGALPPAPQDNEMRASQLYHFADL 242
>ref|XP_012085966.1| mediator of RNA polymerase II transcription subunit 4 [Jatropha
curcas]
gb|KDP26214.1| hypothetical protein JCGZ_22460 [Jatropha curcas]
Length = 417
Score = 156 bits (395), Expect = 9e-41
Identities = 92/180 (51%), Positives = 118/180 (65%), Gaps = 20/180 (11%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS-TKEILSLFHSLQTQLFESVAELQEILDLQDSK 787
A+RG+LP+FL + TKE+LSLF SLQTQLFE+VAELQEILDLQD+K
Sbjct: 99 AFRGSLPTFLSSQTQSMAPPPLESTPTSTKEVLSLFTSLQTQLFEAVAELQEILDLQDAK 158
Query: 786 NKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY---------------QDRDL-- 658
+LAR+IK+KDSALL FA K+KE+E VLD LVDDY++Y +D D+
Sbjct: 159 QRLAREIKSKDSALLNFANKLKEAERVLDMLVDDYSDYRRPKRAKSKLSADVPEDDDVSN 218
Query: 657 --LHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
+ L+L+++L+YAH+ISYTTFAPPE+ PQ+ +MRASQLY FADL
Sbjct: 219 TTVASQLELSDILSYAHRISYTTFAPPEYGAGQVPLRGALPPAPQEEQMRASQLYAFADL 278
>ref|XP_013668306.1| mediator of RNA polymerase II transcription subunit 4-like
[Brassica napus]
Length = 420
Score = 156 bits (395), Expect = 9e-41
Identities = 96/180 (53%), Positives = 113/180 (62%), Gaps = 20/180 (11%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS-TKEILSLFHSLQTQLFESVAELQEILDLQDSK 787
A+RG+LPSFL S TKEILS F+SLQ QLFE+V ELQEILDLQD+K
Sbjct: 112 AFRGSLPSFLTSHSLPPPPPLEIPNPSSTKEILSQFNSLQMQLFEAVTELQEILDLQDAK 171
Query: 786 NKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY--------QDRD---------- 661
KLAR+IK+KDS+LLAFA K+KE+E VLD LVDDYA+Y +D +
Sbjct: 172 QKLAREIKSKDSSLLAFANKLKEAERVLDMLVDDYADYLKPKRTKTEDEENDNESSPSVT 231
Query: 660 -LLHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
+ L L ++LAYAHKISYTTFAPPE PQD +MRASQLY FADL
Sbjct: 232 TTVSSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYAFADL 291
>ref|XP_009122747.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Brassica rapa]
Length = 420
Score = 156 bits (395), Expect = 9e-41
Identities = 96/180 (53%), Positives = 113/180 (62%), Gaps = 20/180 (11%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS-TKEILSLFHSLQTQLFESVAELQEILDLQDSK 787
A+RG+LPSFL S TKEILS F+SLQ QLFE+V ELQEILDLQD+K
Sbjct: 112 AFRGSLPSFLTSHSLPPPPPLEIPNPSSTKEILSQFNSLQMQLFEAVTELQEILDLQDAK 171
Query: 786 NKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY--------QDRD---------- 661
KLAR+IK+KDS+LLAFA K+KE+E VLD LVDDYA+Y +D +
Sbjct: 172 QKLAREIKSKDSSLLAFANKLKEAERVLDMLVDDYADYRKPKRTKTEDEENDNESSPSVT 231
Query: 660 -LLHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
+ L L ++LAYAHKISYTTFAPPE PQD +MRASQLY FADL
Sbjct: 232 TTVSSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYAFADL 291
>ref|XP_010490754.1| PREDICTED: mediator of RNA polymerase II transcription subunit 4
[Camelina sativa]
Length = 424
Score = 156 bits (395), Expect = 1e-40
Identities = 94/177 (53%), Positives = 114/177 (64%), Gaps = 17/177 (9%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS-TKEILSLFHSLQTQLFESVAELQEILDLQDSK 787
A+RG+LPSFL S TKEILS F+SLQTQLFE+V ELQEILDLQD+K
Sbjct: 115 AFRGSLPSFLSSHSLPPPPPLENPNPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAK 174
Query: 786 NKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY-------------QDRD---LL 655
K+AR+IK+KDS+LLAFA K+K++E VLD LVDDY++Y ++ D +
Sbjct: 175 QKVAREIKSKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKTLTDDEEEEDASTTV 234
Query: 654 HPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFADL 484
L L ++LAYAHKISYTTFAPPE PQD +MRASQLY FADL
Sbjct: 235 SSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADL 291
>gb|AAP40461.1| unknown protein [Arabidopsis thaliana]
Length = 426
Score = 156 bits (395), Expect = 1e-40
Identities = 95/181 (52%), Positives = 114/181 (62%), Gaps = 21/181 (11%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS-TKEILSLFHSLQTQLFESVAELQEILDLQDSK 787
A+RG+LPSFL S TKEILS F+SLQTQLFE+V ELQEILDLQD+K
Sbjct: 113 AFRGSLPSFLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAK 172
Query: 786 NKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY------------QDRD------ 661
K+AR+IK+KDS+LLAFA K+K++E VLD LVDDY++Y +D D
Sbjct: 173 QKVAREIKSKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSS 232
Query: 660 --LLHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFAD 487
+ L L ++LAYAHKISYTTFAPPE PQD +MRASQLY FAD
Sbjct: 233 STTVSSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFAD 292
Query: 486 L 484
L
Sbjct: 293 L 293
>ref|NP_195905.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis
thaliana]
sp|Q9LZ00.1|MED4_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 4
emb|CAB86039.1| putative protein [Arabidopsis thaliana]
gb|AED90527.1| hydroxyproline-rich glycoprotein family protein [Arabidopsis
thaliana]
gb|OAO95949.1| hypothetical protein AXX17_AT5G02020 [Arabidopsis thaliana]
Length = 426
Score = 156 bits (395), Expect = 1e-40
Identities = 95/181 (52%), Positives = 114/181 (62%), Gaps = 21/181 (11%)
Frame = -3
Query: 963 AYRGALPSFLXXXXXXXXXXXXXXXXS-TKEILSLFHSLQTQLFESVAELQEILDLQDSK 787
A+RG+LPSFL S TKEILS F+SLQTQLFE+V ELQEILDLQD+K
Sbjct: 113 AFRGSLPSFLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAK 172
Query: 786 NKLARDIKAKDSALLAFAKKIKESELVLDRLVDDYAEY------------QDRD------ 661
K+AR+IK+KDS+LLAFA K+K++E VLD LVDDY++Y +D D
Sbjct: 173 QKVAREIKSKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSS 232
Query: 660 --LLHPNLDLNEVLAYAHKISYTTFAPPEHXXXXXXXXXXXXXXPQDNEMRASQLYRFAD 487
+ L L ++LAYAHKISYTTFAPPE PQD +MRASQLY FAD
Sbjct: 233 STTVSSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFAD 292
Query: 486 L 484
L
Sbjct: 293 L 293