BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00019459
         (1339 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020274150.1| LOW QUALITY PROTEIN: RNA pseudouridine synth...   379   e-154
ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chl...   367   e-140
ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chl...   362   e-138
ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chl...   366   e-138
ref|XP_020113503.1| RNA pseudouridine synthase 2, chloroplastic ...   347   e-134
ref|XP_020704971.1| RNA pseudouridine synthase 2, chloroplastic-...   330   e-130
gb|PKA60768.1| RNA pseudouridine synthase 2, chloroplastic [Apos...   336   e-129
gb|OVA15944.1| RNA-binding S4 domain [Macleaya cordata]               330   e-129
ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chl...   330   e-128
ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chl...   330   e-128
ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chl...   330   e-128
gb|PIA25560.1| hypothetical protein AQUCO_11100019v1 [Aquilegia ...   322   e-123
ref|XP_018675717.1| PREDICTED: RNA pseudouridine synthase 2, chl...   362   e-123
ref|XP_019709777.1| PREDICTED: RNA pseudouridine synthase 2, chl...   372   e-123
ref|XP_010416516.1| PREDICTED: RNA pseudouridine synthase 2, chl...   315   e-123
ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chl...   318   e-123
ref|XP_024040107.1| RNA pseudouridine synthase 2, chloroplastic ...   315   e-123
ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chl...   314   e-123
ref|XP_020890530.1| RNA pseudouridine synthase 2, chloroplastic ...   313   e-123
ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chl...   316   e-123

>ref|XP_020274150.1| LOW QUALITY PROTEIN: RNA pseudouridine synthase 2, chloroplastic
           [Asparagus officinalis]
          Length = 434

 Score =  379 bits (973), Expect(2) = e-154
 Identities = 198/248 (79%), Positives = 211/248 (85%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G+RFE  VD GSAKAR+DSWIAS                GLVAVNG TV KVSHRIKEGD
Sbjct: 56  GVRFEGIVDVGSAKARIDSWIASXXXXXXXXAX------GLVAVNGRTVQKVSHRIKEGD 109

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
           KVSC VSELQPLRAEPEDIPLDIV+EDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC
Sbjct: 110 KVSCTVSELQPLRAEPEDIPLDIVFEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 169

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LP  A T+NKR +E+EE I+SSD+E EDF IDQ S+EEF S+NNDALVRPGIVHRLDKG
Sbjct: 170 RLPTAACTDNKRCIESEECIDSSDNEIEDFPIDQ-SIEEFSSDNNDALVRPGIVHRLDKG 228

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLVIAKDEHSHSHLAEQFK H IHR+YISLTSGVP   SGRIE+PIARDSSNRIRMA
Sbjct: 229 TSGLLVIAKDEHSHSHLAEQFKNHIIHRVYISLTSGVPRPDSGRIEVPIARDSSNRIRMA 288

Query: 726 AVPVLKNS 749
           AVP LKNS
Sbjct: 289 AVPGLKNS 296



 Score =  196 bits (497), Expect(2) = e-154
 Identities = 95/129 (73%), Positives = 103/129 (79%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKVVE+FA GGSALV+WRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMA         
Sbjct: 306  YKVVEVFAGGGSALVRWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMALSLLKPRIP 365

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRSFPRQSA 1111
                     M+SRLQRPCLHAL LGFTHPHTG YL+FSCPPPDDFSE LSLLRSF +Q+ 
Sbjct: 366  SNSHGHLSCMVSRLQRPCLHALSLGFTHPHTGVYLRFSCPPPDDFSEVLSLLRSFSQQTG 425

Query: 1112 VSSDMEIEV 1138
             +SD E+EV
Sbjct: 426  ENSDTELEV 434


>ref|XP_010935174.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
           [Elaeis guineensis]
          Length = 449

 Score =  367 bits (941), Expect(2) = e-140
 Identities = 187/248 (75%), Positives = 209/248 (84%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           GLR E  V+ G+ K R+DSWI+SRI+ VSRARI+SSIRSGLV VNG TV KVSH IK GD
Sbjct: 75  GLRLEERVEIGAEKTRLDSWISSRIETVSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGD 134

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            VSC VSELQPLRAE EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 135 MVSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHC 194

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LP +A  N  +  E+E+  ESSDSE +++  DQSSVE   SEN++ALVRPGIVHRLDKG
Sbjct: 195 RLPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKG 254

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMA
Sbjct: 255 TSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMA 314

Query: 726 AVPVLKNS 749
           AV    NS
Sbjct: 315 AVLGTSNS 322



 Score =  161 bits (407), Expect(2) = e-140
 Identities = 74/114 (64%), Positives = 86/114 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+E+   GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK MA         
Sbjct: 332  YKVIELLGRGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKSMALSLLRPRTS 391

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     ++S+LQRPCLHA  LGF HPHTGEYL+FSCPPPDDF+E L  L+S
Sbjct: 392  SSHHGHLSQILSKLQRPCLHASSLGFKHPHTGEYLRFSCPPPDDFAEVLDQLQS 445


>ref|XP_009382727.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
           [Musa acuminata subsp. malaccensis]
 ref|XP_009382728.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
           [Musa acuminata subsp. malaccensis]
          Length = 440

 Score =  362 bits (928), Expect(2) = e-138
 Identities = 181/248 (72%), Positives = 212/248 (85%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G+R E  V+ G+ K R+DSWI+SRI+GVSRARI+SSIRSGLVAVNG TV+KVSH IK GD
Sbjct: 62  GVRLEERVEVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGD 121

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            VSC++S+L PL+AEPED+PLDIVYED HV+VVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 122 MVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHC 181

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LP+ A  NN +  +TEE  ESSDS+ E+   DQSS+EE   EN +ALVRPGIVHRLDKG
Sbjct: 182 RLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKG 241

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKD+HSH+HLAEQFK+HTIHR+Y+SLTSGVP    GRIEIPIARDS+NRIRM 
Sbjct: 242 TSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRIRMV 301

Query: 726 AVPVLKNS 749
           AV  L NS
Sbjct: 302 AVSGLNNS 309



 Score =  162 bits (409), Expect(2) = e-138
 Identities = 76/114 (66%), Positives = 86/114 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+E F  GG+ALVQWRLETGRTHQIRAHAKYLG+PLLGDE+YGGTK MA         
Sbjct: 319  YKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRTP 378

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     +IS+LQRPCLHA  +GF HPHTGE+L+FSCPPPDDFS+ L  LRS
Sbjct: 379  PTYHGHLSNIISKLQRPCLHAFSIGFKHPHTGEFLQFSCPPPDDFSKVLDQLRS 432


>ref|XP_008806144.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
           [Phoenix dactylifera]
          Length = 439

 Score =  366 bits (939), Expect(2) = e-138
 Identities = 185/248 (74%), Positives = 211/248 (85%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           GLR E SV+ G+ K R+DSWI+SRIQGVSRARI+SSIRSG V VNG TV KVSH IK GD
Sbjct: 65  GLRLEESVEIGAEKTRLDSWISSRIQGVSRARIQSSIRSGFVVVNGRTVDKVSHIIKGGD 124

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            VSC VSELQPLRA+ EDIPLDIVYEDA+VLVVNKPAHMVVHPAPGN NGTLV+A+L+HC
Sbjct: 125 MVSCTVSELQPLRAKAEDIPLDIVYEDAYVLVVNKPAHMVVHPAPGNVNGTLVSAILHHC 184

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LP +A  +N ++ E+EE  ESSD+E +++  DQSSVE   SEN++ALVRPGIVHRLDKG
Sbjct: 185 RLPTIACVSNSKNSESEECSESSDNEMDNYYFDQSSVEGVSSENSEALVRPGIVHRLDKG 244

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMA
Sbjct: 245 TSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMA 304

Query: 726 AVPVLKNS 749
           AV    NS
Sbjct: 305 AVSGTSNS 312



 Score =  157 bits (397), Expect(2) = e-138
 Identities = 71/114 (62%), Positives = 86/114 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+++   GGS+LV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGTK MA         
Sbjct: 322  YKVIKVLGGGGSSLVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTS 381

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     ++S++QRPCLHA  LGF HPHTGE+L+FSCPPPDDF+E L  L+S
Sbjct: 382  SSHHGHLSQILSKVQRPCLHASLLGFKHPHTGEHLRFSCPPPDDFAEVLDQLQS 435


>ref|XP_020113503.1| RNA pseudouridine synthase 2, chloroplastic isoform X1 [Ananas
           comosus]
 gb|OAY68405.1| RNA pseudouridine synthase 2, chloroplastic [Ananas comosus]
          Length = 430

 Score =  347 bits (889), Expect(2) = e-134
 Identities = 172/242 (71%), Positives = 203/242 (83%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G R E +V+ GS ++R+D+W+ASRI+GVSRARI+SSIRSGLVAVNG TV KVSH +K GD
Sbjct: 52  GARLEEAVEVGSGRSRLDAWLASRIRGVSRARIQSSIRSGLVAVNGRTVDKVSHMVKGGD 111

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            +SC VSELQPLRAE EDIPLDIVYED HVLVVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 112 MISCTVSELQPLRAEAEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNANGTLVNAILHHC 171

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LPMV   N+    E++E ++SSD E + +  DQ S EE   E  +ALVRPGIVHRLDKG
Sbjct: 172 RLPMVTCVNDSTMSESDESLDSSDEEIDVYHADQFSTEELSLEVPEALVRPGIVHRLDKG 231

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HLAEQFK+HTI+R+YISLT+GVP   S RIEIPIARD +NR+RM 
Sbjct: 232 TSGLLVVAKDEHSHAHLAEQFKQHTINRVYISLTTGVPNPYSARIEIPIARDPNNRVRMV 291

Query: 726 AV 731
           A+
Sbjct: 292 AI 293



 Score =  160 bits (406), Expect(2) = e-134
 Identities = 76/113 (67%), Positives = 85/113 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            Y+V+E+ A GGSALV+WRLETGRTHQIRAHAKYLGVPLLGDE+YGGTK MA         
Sbjct: 308  YEVIEVLAGGGSALVKWRLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMALSLLKPRTP 367

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLR 1090
                     MIS+L RPCLHAL LGF HP TGE+L+FSCPPPDDFSE +  LR
Sbjct: 368  SSHHGHLSHMISKLDRPCLHALSLGFEHPQTGEFLRFSCPPPDDFSEVVDQLR 420


>ref|XP_020704971.1| RNA pseudouridine synthase 2, chloroplastic-like isoform X1
           [Dendrobium catenatum]
          Length = 437

 Score =  330 bits (846), Expect(2) = e-130
 Identities = 167/249 (67%), Positives = 199/249 (79%)
 Frame = +3

Query: 3   TGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEG 182
           TG+R   +V+ G  + RVDSWI+SRI G+SRAR++SSIR+GLV VNG  + KVSH +K G
Sbjct: 54  TGIRLAETVELGFERTRVDSWISSRIPGISRARVQSSIRTGLVTVNGRIIDKVSHILKGG 113

Query: 183 DKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNH 362
           DKVSCVV EL+PL+AEPE+IPL+IVYED HVLVVNKPAHMVVHPAPGNANGTLVNA+LNH
Sbjct: 114 DKVSCVVCELEPLKAEPEEIPLNIVYEDEHVLVVNKPAHMVVHPAPGNANGTLVNAILNH 173

Query: 363 CKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDK 542
           C+LP  A  N K S ET+   +SS++E  DF +   S EE K+ ++D LVRPGIVHRLDK
Sbjct: 174 CQLPAGACINRKGSSETDN-TDSSENEVGDFYVGH-SYEELKTSSSDELVRPGIVHRLDK 231

Query: 543 GTSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRM 722
           GTSGLLV+AKDEHSH+HLA+QFK HTIHR Y+SL SGVP   SGRI IPI RD +NR RM
Sbjct: 232 GTSGLLVVAKDEHSHAHLAKQFKLHTIHRQYVSLVSGVPSPSSGRIAIPIVRDCNNRTRM 291

Query: 723 AAVPVLKNS 749
           A V  + +S
Sbjct: 292 ATVSGINSS 300



 Score =  167 bits (422), Expect(2) = e-130
 Identities = 79/114 (69%), Positives = 87/114 (76%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKVVE+FA GGSALVQWRLETGRTHQIR HAKYLG+PLLGDELYGGTKG+A         
Sbjct: 310  YKVVEVFAAGGSALVQWRLETGRTHQIRTHAKYLGIPLLGDELYGGTKGLALSLLKSRTP 369

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     M+S+LQRPCLHA  LGF HPHTGE+L FSCPPPDDF+E L  LR+
Sbjct: 370  MSCHALVSDMVSKLQRPCLHAQSLGFKHPHTGEHLHFSCPPPDDFTEILHQLRT 423


>gb|PKA60768.1| RNA pseudouridine synthase 2, chloroplastic [Apostasia shenzhenica]
          Length = 470

 Score =  336 bits (861), Expect(2) = e-129
 Identities = 170/253 (67%), Positives = 196/253 (77%), Gaps = 10/253 (3%)
 Frame = +3

Query: 3   TGLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHK-------- 158
           +G+R E  V+ GS K R+DSWI++RI GVSRAR++SSIRSGLV VNG  +HK        
Sbjct: 78  SGIRLEEMVEIGSEKVRIDSWISTRISGVSRARVQSSIRSGLVTVNGRVIHKSKLPPNSV 137

Query: 159 --VSHRIKEGDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNAN 332
              S  IK GDK+ C++SELQPLRAEPEDIPL+IVYEDAH+LVVNKPAHMVVHPAPGN N
Sbjct: 138 LQASLIIKGGDKICCLISELQPLRAEPEDIPLNIVYEDAHLLVVNKPAHMVVHPAPGNVN 197

Query: 333 GTLVNAVLNHCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALV 512
           GTLVNA+LNHC+LP+      K   ETE   +SSDSE +DF +D   VEE  S   +ALV
Sbjct: 198 GTLVNAILNHCQLPITTCMKRKSFSETEGATDSSDSEIDDFSLDYPLVEESNSSQKEALV 257

Query: 513 RPGIVHRLDKGTSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPI 692
           RPGIVHRLDKGTSGLLV+AKDE +H+HLAEQFKRHTIHR YIS+T GVP   SGRIEIPI
Sbjct: 258 RPGIVHRLDKGTSGLLVVAKDEQAHAHLAEQFKRHTIHRAYISMTCGVPSLSSGRIEIPI 317

Query: 693 ARDSSNRIRMAAV 731
           ARD +NR RMA V
Sbjct: 318 ARDCNNRTRMATV 330



 Score =  158 bits (399), Expect(2) = e-129
 Identities = 76/114 (66%), Positives = 84/114 (73%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            Y+ VEIFA+GG ALVQWRLETGRTHQIRAHAKYLG+PL+GDELYGGTKGM          
Sbjct: 344  YEAVEIFANGGVALVQWRLETGRTHQIRAHAKYLGIPLMGDELYGGTKGMLLSLLYPRIA 403

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     +IS+L RPCLHA  LGF HPHT EYL FSC PPDDF+E L +LRS
Sbjct: 404  LDQRGLVFELISKLDRPCLHAQSLGFEHPHTKEYLCFSCDPPDDFAEILQVLRS 457


>gb|OVA15944.1| RNA-binding S4 domain [Macleaya cordata]
          Length = 458

 Score =  330 bits (845), Expect(2) = e-129
 Identities = 165/248 (66%), Positives = 201/248 (81%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G+  E +V +G+ K+R+DSW++ RI G+SRAR++SSI+SGLV+VNG  ++KVSH I+ GD
Sbjct: 71  GVTLEETVTNGTEKSRLDSWVSIRISGISRARVQSSIKSGLVSVNGRIINKVSHVIRAGD 130

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
           KV+C +SELQPLRAEPEDIPLDIVYEDAHVLVVNKPA+MVVHPAPGN NGTLVN +L+HC
Sbjct: 131 KVNCTISELQPLRAEPEDIPLDIVYEDAHVLVVNKPANMVVHPAPGNPNGTLVNGILHHC 190

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LP+V+  N++   ET +    SD E E F  DQS  EE  S +  ALVRPGIVHRLDKG
Sbjct: 191 RLPIVSSPNSEMLSETGDI---SDEEFESFSSDQSYSEEVSSSSCAALVRPGIVHRLDKG 247

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+ L+EQFK+HTIHR+Y+SLTSGVP   SGRIEIPI RD +NR+RM 
Sbjct: 248 TSGLLVVAKDEHSHAQLSEQFKQHTIHRVYVSLTSGVPSPTSGRIEIPIGRDVNNRLRMT 307

Query: 726 AVPVLKNS 749
           AV    NS
Sbjct: 308 AVSGPNNS 315



 Score =  164 bits (414), Expect(2) = e-129
 Identities = 75/119 (63%), Positives = 90/119 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            Y+V+E+ ADGGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGTKGMA         
Sbjct: 325  YRVIEVLADGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALSLLRPKTP 384

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRSFPRQS 1108
                     ++++L+RPCLHA  LGF HPHTGE + FSCPPP DF+E LSLLR+  + S
Sbjct: 385  SNNHGHLSELVNKLERPCLHAFTLGFKHPHTGEVVNFSCPPPADFTEILSLLRNIKKIS 443


>ref|XP_010241328.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
           [Nelumbo nucifera]
          Length = 471

 Score =  330 bits (846), Expect(2) = e-128
 Identities = 166/243 (68%), Positives = 197/243 (81%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH I+ GD
Sbjct: 67  GVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGD 126

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
           KV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTLVN +L+HC
Sbjct: 127 KVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHC 186

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPGIVHRLDKG
Sbjct: 187 SLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKG 243

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMA
Sbjct: 244 TSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMA 303

Query: 726 AVP 734
           AVP
Sbjct: 304 AVP 306



 Score =  159 bits (402), Expect(2) = e-128
 Identities = 74/114 (64%), Positives = 86/114 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            Y+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGT+ MA         
Sbjct: 321  YRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSH 380

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     ++S+LQRPCLHA  LGF HPHTGE ++FSCPPP DF+E LS LRS
Sbjct: 381  SSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRS 434


>ref|XP_010241329.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
           [Nelumbo nucifera]
          Length = 453

 Score =  330 bits (846), Expect(2) = e-128
 Identities = 166/243 (68%), Positives = 197/243 (81%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH I+ GD
Sbjct: 67  GVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGD 126

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
           KV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTLVN +L+HC
Sbjct: 127 KVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHC 186

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPGIVHRLDKG
Sbjct: 187 SLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKG 243

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMA
Sbjct: 244 TSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMA 303

Query: 726 AVP 734
           AVP
Sbjct: 304 AVP 306



 Score =  159 bits (402), Expect(2) = e-128
 Identities = 74/114 (64%), Positives = 86/114 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            Y+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGT+ MA         
Sbjct: 321  YRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSH 380

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     ++S+LQRPCLHA  LGF HPHTGE ++FSCPPP DF+E LS LRS
Sbjct: 381  SSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRS 434


>ref|XP_010241330.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
           [Nelumbo nucifera]
          Length = 443

 Score =  330 bits (846), Expect(2) = e-128
 Identities = 166/243 (68%), Positives = 197/243 (81%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G+  E +V+  S K+R+DSWI+SRI G+SRAR++SSI+SGLV+VNG  + KVSH I+ GD
Sbjct: 67  GVCLEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGD 126

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
           KV+C + ELQPLRAEPEDIPLDIVYED  VLVVNKPAHMVVHPAPGNANGTLVN +L+HC
Sbjct: 127 KVNCTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHC 186

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LPMVA TN+K   ET++    SD E++ F   Q S+EE  S   +  VRPGIVHRLDKG
Sbjct: 187 SLPMVALTNSKVLSETDDI---SDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKG 243

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HL+EQFK HTI+R+Y+SLT GVP   SGRIE+PI RD SNRIRMA
Sbjct: 244 TSGLLVVAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMA 303

Query: 726 AVP 734
           AVP
Sbjct: 304 AVP 306



 Score =  159 bits (402), Expect(2) = e-128
 Identities = 74/114 (64%), Positives = 86/114 (75%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            Y+VVE+ A GGSALV+WRLETGRTHQIRAHAKYLG+PLLGDE+YGGT+ MA         
Sbjct: 321  YRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRNMALSLLRTRSH 380

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRS 1093
                     ++S+LQRPCLHA  LGF HPHTGE ++FSCPPP DF+E LS LRS
Sbjct: 381  SSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVLSQLRS 434


>gb|PIA25560.1| hypothetical protein AQUCO_11100019v1 [Aquilegia coerulea]
          Length = 463

 Score =  322 bits (825), Expect(2) = e-123
 Identities = 157/242 (64%), Positives = 193/242 (79%)
 Frame = +3

Query: 9   LRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGDK 188
           ++ E +   G  K+R+DSWI+SRI GVSRAR++SSIR+GLV VNG  + KVSH I+ GDK
Sbjct: 83  VQIEKNNGDGLWKSRIDSWISSRIHGVSRARVQSSIRAGLVTVNGRIIDKVSHVIRAGDK 142

Query: 189 VSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHCK 368
           V+C +SELQPLRA PEDIP+DIVYED HVLVVNKPAHMVVHPAPGNANGTLVN +LNHC 
Sbjct: 143 VNCTISELQPLRAVPEDIPIDIVYEDEHVLVVNKPAHMVVHPAPGNANGTLVNGLLNHCN 202

Query: 369 LPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKGT 548
           LP +   +N    E+E   +  D+E+ D + DQ+S  E       + VRPGIVHRLDKGT
Sbjct: 203 LPTITLQSNDILSESE---DDCDNEDNDSIDDQTSCMEISPNMTGSSVRPGIVHRLDKGT 259

Query: 549 SGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMAA 728
           SGLLV+AKDEHSH+HL+EQFK+HTIHR+Y+SLTSGVP   SGR+E+PI RD++NR+RMAA
Sbjct: 260 SGLLVVAKDEHSHAHLSEQFKQHTIHRVYVSLTSGVPSTLSGRVEVPIGRDTNNRVRMAA 319

Query: 729 VP 734
           +P
Sbjct: 320 IP 321



 Score =  151 bits (382), Expect(2) = e-123
 Identities = 70/113 (61%), Positives = 84/113 (74%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+E+ A GGSALV+WRLETGRTHQIRAHAK+LG+PLLGDELYGGTK +A         
Sbjct: 340  YKVMEVLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLLGDELYGGTKSLALSLLQPRVA 399

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLR 1090
                      +++ +RPCLHAL LGF HPHTGE ++FSC PP DF+E L+LLR
Sbjct: 400  SSHCGDLAQFVAKFERPCLHALALGFKHPHTGEKMQFSCQPPADFAEILTLLR 452


>ref|XP_018675717.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
           [Musa acuminata subsp. malaccensis]
          Length = 403

 Score =  362 bits (928), Expect(2) = e-123
 Identities = 181/248 (72%), Positives = 212/248 (85%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G+R E  V+ G+ K R+DSWI+SRI+GVSRARI+SSIRSGLVAVNG TV+KVSH IK GD
Sbjct: 62  GVRLEERVEVGAEKTRIDSWISSRIRGVSRARIQSSIRSGLVAVNGRTVNKVSHIIKGGD 121

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            VSC++S+L PL+AEPED+PLDIVYED HV+VVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 122 MVSCMISKLLPLKAEPEDMPLDIVYEDEHVIVVNKPAHMVVHPAPGNANGTLVNAILHHC 181

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LP+ A  NN +  +TEE  ESSDS+ E+   DQSS+EE   EN +ALVRPGIVHRLDKG
Sbjct: 182 RLPIRAFANNIQISDTEECSESSDSDIEEVCADQSSMEEVGIENYEALVRPGIVHRLDKG 241

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKD+HSH+HLAEQFK+HTIHR+Y+SLTSGVP    GRIEIPIARDS+NRIRM 
Sbjct: 242 TSGLLVVAKDDHSHAHLAEQFKKHTIHRVYMSLTSGVPNPSYGRIEIPIARDSNNRIRMV 301

Query: 726 AVPVLKNS 749
           AV  L NS
Sbjct: 302 AVSGLNNS 309



 Score =  112 bits (279), Expect(2) = e-123
 Identities = 54/85 (63%), Positives = 61/85 (71%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+E F  GG+ALVQWRLETGRTHQIRAHAKYLG+PLLGDE+YGGTK MA         
Sbjct: 319  YKVIEDFMGGGAALVQWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKDMALSLLRPRTP 378

Query: 932  XXXXXXXXXMISRLQRPCLHALYLG 1006
                     +IS+LQRPCLHA  +G
Sbjct: 379  PTYHGHLSNIISKLQRPCLHAFSIG 403


>ref|XP_019709777.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
           [Elaeis guineensis]
 ref|XP_019709778.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
           [Elaeis guineensis]
          Length = 343

 Score =  372 bits (954), Expect = e-123
 Identities = 195/269 (72%), Positives = 218/269 (81%), Gaps = 7/269 (2%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           GLR E  V+ G+ K R+DSWI+SRI+ VSRARI+SSIRSGLV VNG TV KVSH IK GD
Sbjct: 75  GLRLEERVEIGAEKTRLDSWISSRIETVSRARIQSSIRSGLVTVNGRTVDKVSHIIKGGD 134

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            VSC VSELQPLRAE EDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNA+L+HC
Sbjct: 135 MVSCTVSELQPLRAEAEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAILHHC 194

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
           +LP +A  N  +  E+E+  ESSDSE +++  DQSSVE   SEN++ALVRPGIVHRLDKG
Sbjct: 195 RLPTIACVNKSKISESEDCSESSDSEMDNYYFDQSSVEGISSENSEALVRPGIVHRLDKG 254

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HLAEQFK HTIHR+YISLT GVP   SGRIEIPIARDS+NRIRMA
Sbjct: 255 TSGLLVVAKDEHSHAHLAEQFKLHTIHRVYISLTCGVPNPSSGRIEIPIARDSNNRIRMA 314

Query: 726 AVPVLKNS-------SIK*LRFLLMGDLH 791
           AV    NS       SIK L FL + D H
Sbjct: 315 AVLGTSNSRHARYAASIKLLSFLAVVDQH 343


>ref|XP_010416516.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
           [Camelina sativa]
          Length = 431

 Score =  315 bits (806), Expect(2) = e-123
 Identities = 160/243 (65%), Positives = 188/243 (77%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           GLR E +VDS   K R+DSWI+SR+ GVSRAR++SSIR GLV VNG  + KVSH +K GD
Sbjct: 67  GLRIEETVDSVQGKIRIDSWISSRVIGVSRARVQSSIRLGLVTVNGRVIDKVSHNVKAGD 126

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
           +V+C +SELQPL+AE EDIPLDIVYED H+LVVNKPAHMVVHPAPGN  GTLVN +L+HC
Sbjct: 127 EVNCTISELQPLKAEAEDIPLDIVYEDKHLLVVNKPAHMVVHPAPGNPTGTLVNGILHHC 186

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LP VA++N           E  DSE+E +  D+   E   S +  A VRPGIVHRLDKG
Sbjct: 187 SLPYVAYSNP----------EEDDSEDEAYSDDE---EMTSSSSYAASVRPGIVHRLDKG 233

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           T+GLLV+AKDEHSH+HLAEQFK HTI R+Y+SLT+GVP    GRIEIPI RDSSNRIRMA
Sbjct: 234 TTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMA 293

Query: 726 AVP 734
           A+P
Sbjct: 294 AIP 296



 Score =  157 bits (398), Expect(2) = e-123
 Identities = 75/113 (66%), Positives = 84/113 (74%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+E FA GGSALV+WRLETGRTHQIRAHAKY+GVPLLGDE+YGGTK MA         
Sbjct: 311  YKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVS 370

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLR 1090
                     +ISRL RPCLHA+ LGFTHP TGE +KFSCPPP D +E + LLR
Sbjct: 371  RSDQEEIIELISRLDRPCLHAIVLGFTHPCTGEIVKFSCPPPPDLAEIVGLLR 423


>ref|XP_006656497.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Oryza
           brachyantha]
          Length = 442

 Score =  318 bits (815), Expect(2) = e-123
 Identities = 163/245 (66%), Positives = 193/245 (78%), Gaps = 2/245 (0%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQG--VSRARIESSIRSGLVAVNGITVHKVSHRIKE 179
           G R E +V +G  ++R+D+WI+SR+ G  VSRAR+++SIR+GLVAVNG  V KVSH +K 
Sbjct: 56  GTRLEEAVPAGEGRSRIDAWISSRLGGGGVSRARVQASIRAGLVAVNGRPVSKVSHMVKG 115

Query: 180 GDKVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLN 359
           GD VSC VSELQPLRAEPEDIPLDIVYED H+LVVNKPAHMVVHPAPGNANGTLVNA+L+
Sbjct: 116 GDMVSCTVSELQPLRAEPEDIPLDIVYEDQHLLVVNKPAHMVVHPAPGNANGTLVNAILH 175

Query: 360 HCKLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLD 539
           HCK+     T   R+   +E  +SSD + + F +DQ +  E  SE  +ALVRPGIVHRLD
Sbjct: 176 HCKIS--TFTCLARNSTDDECPDSSDDDIDVFHVDQFTTGEVSSEVREALVRPGIVHRLD 233

Query: 540 KGTSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIR 719
           KGTSGLLV+AKDEHSH+ LAEQFK HTI R+YISLT G P   SGRIE+PIARD +NRIR
Sbjct: 234 KGTSGLLVVAKDEHSHAQLAEQFKLHTIRRVYISLTCGAPNPNSGRIEVPIARDPNNRIR 293

Query: 720 MAAVP 734
           M A P
Sbjct: 294 MIATP 298



 Score =  154 bits (388), Expect(2) = e-123
 Identities = 71/113 (62%), Positives = 84/113 (74%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV E+FA GGSALV+W+LETGRTHQIRAHAKYLG+PLLGDE YGGTK MA         
Sbjct: 312  YKVREVFAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDETYGGTKSMALSLLRPRTS 371

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLR 1090
                     +I+++ RPCLHA  LGF HPH+G+ L+FSCPPPDDF+E L+ LR
Sbjct: 372  SRYHCDLSNLIAKIDRPCLHAALLGFKHPHSGKILEFSCPPPDDFTEVLNELR 424


>ref|XP_024040107.1| RNA pseudouridine synthase 2, chloroplastic [Citrus clementina]
          Length = 421

 Score =  315 bits (806), Expect(2) = e-123
 Identities = 157/243 (64%), Positives = 190/243 (78%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G++ E +VD+ + K R+D+WI+SRI G+SRAR++SSIRSGLV+VNG  V KVSH +K GD
Sbjct: 57  GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSVNGQVVSKVSHNVKGGD 116

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            V+C +SELQPLRAE EDIPLDIVYED +VLVVNKPAHMVVHPAPGNA GTLVN +L+HC
Sbjct: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LP +A +N +   + E               D S  EEF S  + A +RPGIVHRLDKG
Sbjct: 177 SLPTLASSNQEAFSDAE---------------DISDDEEFSSSISGASIRPGIVHRLDKG 221

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HL+EQFK HTI R+YISLTSGVP + SGRIE+PI+RD +NRIRMA
Sbjct: 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 281

Query: 726 AVP 734
           A+P
Sbjct: 282 AIP 284



 Score =  157 bits (397), Expect(2) = e-123
 Identities = 75/123 (60%), Positives = 88/123 (71%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+EI A GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK MA         
Sbjct: 299  YKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTA 358

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRSFPRQSA 1111
                     ++S LQRPCLHA+ LGFTHPHT E ++FSCPPP DF+E LS LR    +  
Sbjct: 359  PGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGTEKL 418

Query: 1112 VSS 1120
             S+
Sbjct: 419  SSN 421


>ref|XP_006473714.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
           [Citrus sinensis]
          Length = 421

 Score =  314 bits (805), Expect(2) = e-123
 Identities = 156/243 (64%), Positives = 190/243 (78%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G++ E +VD+ + K R+D+WI+SRI G+SRAR++SSIRSGLV++NG  V KVSH +K GD
Sbjct: 57  GVQLEETVDTKAGKLRLDAWISSRIDGISRARVQSSIRSGLVSINGQVVSKVSHNVKGGD 116

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            V+C +SELQPLRAE EDIPLDIVYED +VLVVNKPAHMVVHPAPGNA GTLVN +L+HC
Sbjct: 117 MVNCTISELQPLRAEAEDIPLDIVYEDDNVLVVNKPAHMVVHPAPGNATGTLVNGILHHC 176

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LP +A +N +   + E               D S  EEF S  + A +RPGIVHRLDKG
Sbjct: 177 SLPTLASSNQEAFSDAE---------------DISDDEEFSSSISGASIRPGIVHRLDKG 221

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HL+EQFK HTI R+YISLTSGVP + SGRIE+PI+RD +NRIRMA
Sbjct: 222 TSGLLVVAKDEHSHAHLSEQFKLHTIERVYISLTSGVPSQSSGRIEVPISRDPNNRIRMA 281

Query: 726 AVP 734
           A+P
Sbjct: 282 AIP 284



 Score =  157 bits (397), Expect(2) = e-123
 Identities = 75/123 (60%), Positives = 88/123 (71%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+EI A GGSALV+WRLETGRTHQIRAHAKY+G+PLLGDE+YGGTK MA         
Sbjct: 299  YKVIEILAGGGSALVEWRLETGRTHQIRAHAKYMGIPLLGDEVYGGTKNMAKSLLQPRTA 358

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLRSFPRQSA 1111
                     ++S LQRPCLHA+ LGFTHPHT E ++FSCPPP DF+E LS LR    +  
Sbjct: 359  PGSHGKVLKLVSGLQRPCLHAVALGFTHPHTREKIQFSCPPPADFAEILSQLREIGTEKL 418

Query: 1112 VSS 1120
             S+
Sbjct: 419  SSN 421


>ref|XP_020890530.1| RNA pseudouridine synthase 2, chloroplastic isoform X1 [Arabidopsis
           lyrata subsp. lyrata]
          Length = 441

 Score =  313 bits (803), Expect(2) = e-123
 Identities = 159/243 (65%), Positives = 186/243 (76%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           GLR E +VD+   K R+DSWI+SR+ GVSRAR++SSIR GLV VNG  V KVSH +K GD
Sbjct: 69  GLRIEETVDALKGKIRLDSWISSRVNGVSRARVQSSIRLGLVTVNGRVVDKVSHNVKAGD 128

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
           +V+C +SELQPL+AE EDIPLDIVYED HVLVVNKPAHMVVHPAPGN  GTLVN +L+HC
Sbjct: 129 EVNCTISELQPLKAEAEDIPLDIVYEDKHVLVVNKPAHMVVHPAPGNPTGTLVNGILHHC 188

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LP V+++N           E  DS+ E F  D+       S +  A VRPGIVHRLDKG
Sbjct: 189 SLPCVSYSN----------AEDDDSDEETFSDDEEMTT--SSSSYAASVRPGIVHRLDKG 236

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           T+GLLV+AKDEHSH+HLAEQFK HTI R+Y+SLT+GVP    GRIEIPI RDSSNRIRMA
Sbjct: 237 TTGLLVVAKDEHSHAHLAEQFKLHTIERVYVSLTTGVPSPPQGRIEIPIGRDSSNRIRMA 296

Query: 726 AVP 734
           A+P
Sbjct: 297 AIP 299



 Score =  157 bits (397), Expect(2) = e-123
 Identities = 74/113 (65%), Positives = 84/113 (74%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+E FA GGSALV+WRLETGRTHQIRAHAKY+GVPLLGDE+YGGTK MA         
Sbjct: 314  YKVIETFAGGGSALVEWRLETGRTHQIRAHAKYMGVPLLGDEVYGGTKSMALSLLQKRVS 373

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLR 1090
                     +ISR+ RPCLHA+ LGFTHP TGE +KFSCPPP D +E + LLR
Sbjct: 374  RSDQEEIVELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGLLR 426


>ref|XP_010533976.1| PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Tarenaya
           hassleriana]
          Length = 435

 Score =  316 bits (809), Expect(2) = e-123
 Identities = 159/247 (64%), Positives = 189/247 (76%)
 Frame = +3

Query: 6   GLRFEASVDSGSAKARVDSWIASRIQGVSRARIESSIRSGLVAVNGITVHKVSHRIKEGD 185
           G++F+ +VD  + K R+DSWI+SR+ GVSRAR++SSIR GLV VNG  V KVSH +K GD
Sbjct: 70  GVKFQETVDVATGKIRLDSWISSRVHGVSRARVQSSIRLGLVCVNGRVVDKVSHNVKAGD 129

Query: 186 KVSCVVSELQPLRAEPEDIPLDIVYEDAHVLVVNKPAHMVVHPAPGNANGTLVNAVLNHC 365
            VSC +SELQPL+AEPED+PLDIVYED HVLVVNKPAHMVVHPAPGN NGTLVN +L+HC
Sbjct: 130 MVSCTISELQPLKAEPEDMPLDIVYEDNHVLVVNKPAHMVVHPAPGNPNGTLVNGILHHC 189

Query: 366 KLPMVAHTNNKRSMETEEYIESSDSENEDFLIDQSSVEEFKSENNDALVRPGIVHRLDKG 545
            LP+VA+++ +            D + EDF  D+   E   S    A VRPGIVHRLDKG
Sbjct: 190 SLPIVAYSDTE-----------VDPDEEDFSEDE---ETMSSSAYSASVRPGIVHRLDKG 235

Query: 546 TSGLLVIAKDEHSHSHLAEQFKRHTIHRMYISLTSGVPYRGSGRIEIPIARDSSNRIRMA 725
           TSGLLV+AKDEHSH+HLAEQFK+HTI R+Y+SLT GVP    GRI IPI RD +NRIRMA
Sbjct: 236 TSGLLVVAKDEHSHAHLAEQFKQHTIERVYVSLTCGVPSPSHGRIVIPIGRDLNNRIRMA 295

Query: 726 AVPVLKN 746
           A+P L N
Sbjct: 296 AIPGLSN 302



 Score =  155 bits (391), Expect(2) = e-123
 Identities = 74/113 (65%), Positives = 83/113 (73%)
 Frame = +2

Query: 752  YKVVEIFADGGSALVQWRLETGRTHQIRAHAKYLGVPLLGDELYGGTKGMAXXXXXXXXX 931
            YKV+EI A GGSALV+WRLETGRTHQIRAHAKY+GVPLLGDE+YG TK MA         
Sbjct: 313  YKVIEILAGGGSALVEWRLETGRTHQIRAHAKYVGVPLLGDEVYGATKSMALSLLQKRAS 372

Query: 932  XXXXXXXXXMISRLQRPCLHALYLGFTHPHTGEYLKFSCPPPDDFSEALSLLR 1090
                     ++SRL RPCLHAL LGF HP TGE +KFSCPPP DF+E L +LR
Sbjct: 373  RNDHGQILELVSRLDRPCLHALVLGFKHPCTGEDVKFSCPPPPDFAETLGMLR 425