BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00019302
         (1349 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CDP17738.1| unnamed protein product [Coffea canephora]            348   e-109
emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus v...   336   e-104
gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposo...   326   3e-98
emb|CDP17739.1| unnamed protein product [Coffea canephora]            275   2e-84
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo...   283   2e-82
gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]              278   2e-79
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar...   278   3e-79
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar...   278   3e-79
dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]            278   5e-79
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-...   278   5e-79
gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]          268   9e-78
gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]              273   1e-77
gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]              273   1e-77
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]     271   3e-77
gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]              271   4e-77
gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposo...   271   4e-77
gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposo...   271   5e-77
gb|AFB73911.1| polyprotein [Citrus sinensis]                          271   5e-77
emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]         267   7e-77
emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]                        267   7e-77

>emb|CDP17738.1| unnamed protein product [Coffea canephora]
          Length = 798

 Score =  348 bits (894), Expect = e-109
 Identities = 186/445 (41%), Positives = 284/445 (63%), Gaps = 7/445 (1%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGI 1170
            +MGN +  +  G+G+I++R HDG  R +  VRYVP +++ +IS+G LE++GL+ R+ +GI
Sbjct: 338  YMGNDNPCKTVGIGSIKLRNHDGSTRILKDVRYVPNLKRSLISLGLLESKGLEVRMRDGI 397

Query: 1169 LRMTKGSLIVMKGVRRGHLYYLQGSIEGGTLC-----TSENDDGTLEVWKKRLGLTCIDP 1005
            L++T G+L+++KGVR+ +LYY QGS   GT       +S+ D    ++W  RLG      
Sbjct: 398  LKVTSGALLMLKGVRKNNLYYYQGSTVVGTAAVATSSSSKKDAEATKLWHMRLGDAGEKS 457

Query: 1004 VRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTAS 825
            ++ LA++G++ G         +    +KQ++VKF T +H  KGIL+ VH DVWGP KT S
Sbjct: 458  LQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSDVWGPAKTPS 517

Query: 824  IGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQK 645
            +GG ++FV+F+D++SR  WV  M  K E+L+++ KWK  VE QTGRKI+ L+ DN G  +
Sbjct: 518  LGGRYYFVTFIDDFSRRVWVFTMKSKDEMLKIFLKWKARVENQTGRKIKILRTDNGG--E 575

Query: 644  YVKDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVE 465
            Y  DPF+KIC + GI R FI R+    Q +G+++ MN+TL+E+VR ++SN+G+ R  W E
Sbjct: 576  YKSDPFQKICQECGIVRHFIVRK--IPQQNGVSEHMNKTLVEKVRCMLSNAGLGRKFWAE 633

Query: 464  ALTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASC-VKDARGDSKAGRL 288
            A+TYA HL+NRLP++AIG +TP+EVWSG +ATDY  LRIF   A   V +++ D +A + 
Sbjct: 634  AVTYAQHLVNRLPSSAIGGKTPLEVWSGKLATDYDSLRIFDSTAYYHVNESKLDPRAKKA 693

Query: 287  LFLGF-RGAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEYDA 111
            LF+GF  G  GY+LW   +++ I+ + V FDE++++        +  Q GT   P + + 
Sbjct: 694  LFMGFSAGVKGYRLWYLEAKKTIISRDVTFDESVMLN-------KITQDGTSGTPQQVEC 746

Query: 110  TPQSPSITVSRRLPVNEIQRGDPVA 36
            TP+          P N      P+A
Sbjct: 747  TPKQVEFEQIVVSPANSTISDSPMA 771


>emb|CDN96898.1| putative Ty-1 copia retrotransposon [Phaseolus vulgaris]
          Length = 813

 Score =  336 bits (861), Expect = e-104
 Identities = 183/438 (41%), Positives = 276/438 (63%), Gaps = 8/438 (1%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGI 1170
            +MGN +  +  G+G+I++R HDG  R +  VRYVP ++K +IS+GALE++GL   + +GI
Sbjct: 253  YMGNDNPCKTVGIGSIKLRNHDGSTRILRDVRYVPKLKKNLISLGALESKGLVVTMRDGI 312

Query: 1169 LRMTKGSLIVMKGVRRGHLYYLQGSIEGGTLC----TSENDDGTLEVWKKRLGLTCIDPV 1002
            L+ T G+L+++KGV + +LYY QGS   GT+     +S+ D    ++W  RLG      +
Sbjct: 313  LKATLGALVMLKGVMKNNLYYYQGSTVVGTVAAATSSSKKDAEAAKLWHMRLGHAGEKSL 372

Query: 1001 RELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASI 822
            + L ++G++ G         +     KQ+RVKF T +H  KGIL+ VH DVWGP KT SI
Sbjct: 373  QILTKQGLLKGTKACKLEFCEHCVLGKQRRVKFGTAIHNTKGILDYVHSDVWGPAKTPSI 432

Query: 821  GGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKY 642
            GG H+FV+FVD++SR  WV  M  K +VLE++ KWK  VE  TGRKI+ LQ DN G  +Y
Sbjct: 433  GGRHYFVTFVDDFSRRVWVFTMKNKNDVLEIFLKWKAEVENHTGRKIKVLQTDNGG--EY 490

Query: 641  VKDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEA 462
              DPF  +C   GI R F  R+    Q +G+++ MN+TL+E+V  ++SN+ + R  W EA
Sbjct: 491  KSDPFLNVCQDCGIVRHFTVRKT--PQQNGVSERMNKTLVEKVCCMLSNAELGREFWAEA 548

Query: 461  LTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASC-VKDARGDSKAGRLL 285
            +TYA HL+NRLP++AI  +TP+EVWSG  ATDY  L +FG  A   V +++ D +A + L
Sbjct: 549  VTYAQHLVNRLPSSAIDGKTPLEVWSGKPATDYDSLHVFGSIAYYHVIESKLDPRAKKAL 608

Query: 284  FLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVES--KQIGTVSQPVEYD 114
            F+GF  G  GY+LW    ++ I+ + V FDE++++K  + +  +S  +Q+  V + VE++
Sbjct: 609  FMGFSPGVKGYRLWCLEKKKTIISRDVTFDESVMLKKVNPEGTDSTPQQVECVRKQVEFE 668

Query: 113  ATPQSPSITVSRRLPVNE 60
             T   P+   +   P+ E
Sbjct: 669  PTVVIPTRNTTSDSPMAE 686


>gb|KYP47640.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 1032

 Score =  326 bits (836), Expect = 3e-98
 Identities = 176/449 (39%), Positives = 275/449 (61%), Gaps = 11/449 (2%)
 Frame = -1

Query: 1316 GVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGILRMTKGSLIVM 1137
            G+G+IR++  DG IR +  VR+VP++ + +ISVGALE +G     E G++++  G+L+VM
Sbjct: 113  GIGSIRLKNRDGAIRTLKDVRFVPSLSRNLISVGALEEKGFTVHAEGGVMKIISGALVVM 172

Query: 1136 KGVRRGH-LYYLQGSIEGGTLCTSENDDGTLE---VWKKRLGLTCIDPVRELAQRGVIDG 969
            KGVR+ + LYY QG+   GT   + +D+  LE   +W  RLG      +  L ++G++  
Sbjct: 173  KGVRKNNRLYYYQGTTIIGTAAVASSDEKELESAKLWHMRLGHAGERSLNLLMKQGLLKN 232

Query: 968  VSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIGGHHWFVSFVD 789
            +        +     K+ RVKF T +H  KGIL+ VH DVWGP+KTAS+ G+H++V+FVD
Sbjct: 233  IQACKLDFCEHCVKGKKTRVKFGTAIHDTKGILDYVHSDVWGPSKTASLAGNHYYVTFVD 292

Query: 788  EYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVKDPFRKICLK 609
            ++SR  WV  M  K EVL ++ KWKK +E QTGRKI+  + DN G  +Y  DPF+K C +
Sbjct: 293  DFSRRIWVYAMKTKDEVLGIFLKWKKRMETQTGRKIKHFRTDNGG--EYTSDPFKKACEE 350

Query: 608  EGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEALTYACHLMNRL 429
             GI R F  +  +  Q +G+A+ MNRTLLE+VR ++SN+G+ +  W EA+ YA HL+NRL
Sbjct: 351  SGIVRHFTVK--HTPQQNGVAERMNRTLLEKVRCMLSNAGLGKQFWAEAVVYASHLINRL 408

Query: 428  PNAAIGARTPIEVWSGSVATDYGMLRIFGCQASC-VKDARGDSKAGRLLFLGF-RGAYGY 255
            P++AIG +TP+E W G  ATDY  L +FGC A   VK+++ D +A + +F+G   G  GY
Sbjct: 409  PSSAIGGKTPLEKWFGKPATDYDSLHVFGCTAYYHVKESKLDPRAKKAIFMGIASGVKGY 468

Query: 254  KLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQ-----PVEYDATPQSPSI 90
            +LW   +++ I+ + V FDE+ ++   ++   E K+ GT  Q      + + A  +  + 
Sbjct: 469  RLWCLETKKTIISRDVTFDESTMLGKVTT---EQKKNGTPKQVEFERKIVFPANDEEKTP 525

Query: 89   TVSRRLPVNEIQRGDPVARIDTVPSRSQR 3
             V       E+   +P  +++++  R  +
Sbjct: 526  MVDEESDEEEVHIQEPPQQLESIALRKPK 554


>emb|CDP17739.1| unnamed protein product [Coffea canephora]
          Length = 435

 Score =  275 bits (703), Expect = 2e-84
 Identities = 154/390 (39%), Positives = 235/390 (60%), Gaps = 7/390 (1%)
 Frame = -1

Query: 1184 IENGILRMTKGSLIVMKGVRRGHLYYLQGSIEGGTLC-----TSENDDGTLEVWKKRLGL 1020
            + +GIL++T G+L+++KGVR+  LYY QGSI  GT       +S+ D    ++W  RLG 
Sbjct: 1    MRDGILKVTSGALVMLKGVRKNILYYYQGSIVVGTAAATTSSSSKKDAEATKLWHMRLGH 60

Query: 1019 TCIDPVRELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGP 840
                 ++ LA++G++ G         +    +KQ++VKF T +H  KGIL+ VH +VWGP
Sbjct: 61   AGEKSLQNLAKQGLLKGTKVCKLEFCEHCVLEKQRKVKFGTGIHNTKGILDYVHSNVWGP 120

Query: 839  TKTASIGGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDN 660
             KT S+GG ++FV+F+D++SR  WV  M  K EVLE++ KWK  VE QTGRKI+ L+ DN
Sbjct: 121  AKTPSLGGRYYFVTFIDDFSRRVWVFTMKSKDEVLEIFLKWKARVENQTGRKIKILRTDN 180

Query: 659  AGKQKYVKDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVER 480
             G  +Y  DPF+KI  + GI + F  R+    Q +G+++ MN+TL+E+V  ++SN+ + R
Sbjct: 181  GG--EYKSDPFQKIGQECGIVQHFTVRKT--PQQNGVSERMNKTLVEKVHCMLSNARLGR 236

Query: 479  TLWVEALTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASC-VKDARGDS 303
              W E +TYA HL+NRLP++AIG +TP+EVWSG   TDY  LRIF   A   V +++ D 
Sbjct: 237  KFWAETVTYAQHLVNRLPSSAIGGKTPLEVWSGKPTTDYDSLRIFYSTAYYHVNESKLDP 296

Query: 302  KAGRLLFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQP 126
            +A + +F+G   G  GY+LW   +++ I+ + V F+E+ ++   +       Q GT   P
Sbjct: 297  RAKKAIFMGLNAGVKGYRLWCLEAKKTIISRDVTFNESAMLNKVT-------QNGTSGTP 349

Query: 125  VEYDATPQSPSITVSRRLPVNEIQRGDPVA 36
             + + TP+          P N      P+A
Sbjct: 350  QQVECTPKQVEFEQIVVSPANSTISDSPMA 379


>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1032

 Score =  283 bits (725), Expect = 2e-82
 Identities = 162/434 (37%), Positives = 259/434 (59%), Gaps = 13/434 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MGN +  +I G+G I+I+ HDG I+ +S VR++P +++ +IS+G LE+ G K   E G+L
Sbjct: 21   MGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGTLESLGCKYSAEGGVL 80

Query: 1166 RMTKGSLIVMKGVRRGHLYYLQGSIEGGTLCTSEN--DDGTLEVWKKRLGLTCIDPVREL 993
            +++KG+++++K  R G LY LQGSI  G+   S +  D    ++W  RLG      +  L
Sbjct: 81   KVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATKLWHMRLGHMSEKGMHLL 140

Query: 992  AQRGVIDGVSTYGGIAH-DRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIGG 816
            +++G++ G    G +   +     KQKRV F T  HR KG L+ +H D+WGP+K  S GG
Sbjct: 141  SKQGLL-GNQGIGKLEFCEHCVFGKQKRVSFSTATHRTKGTLDYIHSDLWGPSKVPSYGG 199

Query: 815  HHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVK 636
              + ++ +D++SR  WV  +  K E    +KKWK  VE QTG+K++ L+ DN    ++ +
Sbjct: 200  CRYMMTIIDDFSRKVWVYFLRHKNETFPTFKKWKTLVETQTGKKVKKLRTDNG--LEFCE 257

Query: 635  DPFRKICLKEGI-RRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGV--ERTLWVE 465
              F + C   GI R   IP +    Q +G+A+ +NRT+LER R ++SN+G+  +R LWVE
Sbjct: 258  GDFNEFCANHGIARHKTIPGK---PQQNGVAERLNRTILERARCMLSNAGLWHQRELWVE 314

Query: 464  ALTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRL 288
            A + AC+L+NR P++++  + P E+WSG+   DY  LRIFGC A + V D +   +A + 
Sbjct: 315  AASTACYLINRSPHSSLNFKIPEEIWSGN-PIDYSNLRIFGCPAYAHVNDGKLAPRAIKC 373

Query: 287  LFLGFRG-AYGYKLW--DQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTV---SQP 126
            +FLG+   + GY+LW  +  SRR+IL + V F+E  ++ S     V S     +   S+ 
Sbjct: 374  IFLGYASESKGYRLWCSESKSRRLILSRDVTFNEDALLSSGKQSSVSSSSTNNLQGTSEK 433

Query: 125  VEYDATPQSPSITV 84
            VE +    +P++ V
Sbjct: 434  VELELKSVAPNVDV 447


>gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  278 bits (710), Expect = 2e-79
 Identities = 163/445 (36%), Positives = 258/445 (57%), Gaps = 8/445 (1%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGI 1170
            +MGN    +I GVG IR++MHDG +R++ GVR+V  ++K ++SVG L+  G K   E+GI
Sbjct: 320  YMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGI 379

Query: 1169 LRMTKGSLIVMKGVR-RGHLYYLQGSI--EGGTLCTSENDDGTLEVWKKRLGLTCIDPVR 999
            L++ KG+L+VMK  +   +LY L G    E      + + + T  +W +RLG      ++
Sbjct: 380  LKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLK 439

Query: 998  ELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIG 819
             L +R ++ G+ T      +     KQ R+KF  V  R K IL+++H DVW  +   S+G
Sbjct: 440  VLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW-ESPELSLG 498

Query: 818  GHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYV 639
            G  +FVSF+D+YSR  WV P+ +K +V  V+K +K  +EL+TG+KI+ L+ DN G  +YV
Sbjct: 499  GARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGG--EYV 556

Query: 638  KDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEAL 459
               F   C +EGI R F    A+  Q +G+A+ MNRTLLER R+++  +G+ ++ W EA+
Sbjct: 557  DGEFLAFCKQEGIVRQF--TVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAV 614

Query: 458  TYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASCVKDARG----DSKAGR 291
              AC+++NR P+ AI  +TP+E+W G    DY  L +FGC    + +++     D K+ +
Sbjct: 615  KTACYVINRSPSTAIDLKTPMEMWKGK-PVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673

Query: 290  LLFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEYD 114
             +FLG+     GY+LWD  +R++++ + V F E  +   Q +    SK+   V      +
Sbjct: 674  CIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSKQKNDST-SKETAIVQME---E 729

Query: 113  ATPQSPSITVSRRLPVNEIQRGDPV 39
             + +S S   S   PV+E Q  D V
Sbjct: 730  KSKESDS---SEAEPVHEEQEPDDV 751


>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
          Length = 1841

 Score =  278 bits (712), Expect = 3e-79
 Identities = 167/445 (37%), Positives = 257/445 (57%), Gaps = 11/445 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MGN    Q+ G+G +RI+M DG++R ++ VR++P M+K +IS+  L+ +G +   E G+L
Sbjct: 838  MGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVL 897

Query: 1166 RMTKGSLIVMKGVRRGHLYYLQGSIEGGTLCTSENDD---GTLEVWKKRLGLTCIDPVRE 996
            ++  G+L V++G     LY+L GS   G    S +DD    T ++W  RLG      +  
Sbjct: 898  KVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSV 957

Query: 995  LAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIGG 816
            L++RG++ G  T      +     KQ RVKF T +H+ KG ++  H D+WGP+ T S GG
Sbjct: 958  LSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGG 1017

Query: 815  HHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVK 636
            + + ++F+D+YSR  WV  +  K EVL  +K++K  +E QTG+KI+  + DN    ++  
Sbjct: 1018 YRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNG--LEFCS 1075

Query: 635  DPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEALT 456
              F + C  EGI R    R     Q +G+A+ MNRTLLER R + SN+G+    W EA+ 
Sbjct: 1076 GEFNEFCKNEGIVRHRTVRRT--PQQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVN 1133

Query: 455  YACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRLLFL 279
             AC+L+NR P+ AI  +TP EVWSGS A DY  LR+FGC A + V + +   +A + +FL
Sbjct: 1134 TACYLVNRSPSTAIELKTPEEVWSGSPA-DYSGLRVFGCPAYAHVNEGKLKPRAKKCIFL 1192

Query: 278  GF-RGAYGYKLW--DQGSRRIILRKQVDFDETLVMKS--QSSQYVESKQIGT--VSQPVE 120
            G+ +G  GY+LW  D  S + I+ + V FDE+ +++S   S +  ES ++G   V + VE
Sbjct: 1193 GYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKEESDRMGDHGVEKQVE 1252

Query: 119  YDATPQSPSITVSRRLPVNEIQRGD 45
                   P+   S +    E+Q  D
Sbjct: 1253 CQVDAPIPTEGTSVQDDQVEVQDSD 1277


>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
          Length = 2351

 Score =  278 bits (712), Expect = 3e-79
 Identities = 167/445 (37%), Positives = 257/445 (57%), Gaps = 11/445 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MGN    Q+ G+G +RI+M DG++R ++ VR++P M+K +IS+  L+ +G +   E G+L
Sbjct: 817  MGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLISLSTLDKKGFRYSAEGGVL 876

Query: 1166 RMTKGSLIVMKGVRRGHLYYLQGSIEGGTLCTSENDD---GTLEVWKKRLGLTCIDPVRE 996
            ++  G+L V++G     LY+L GS   G    S +DD    T ++W  RLG      +  
Sbjct: 877  KVFSGALTVIRGNLERGLYFLDGSSVTGVAGVSSSDDLDSDTTKLWHMRLGHMSERGLSV 936

Query: 995  LAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIGG 816
            L++RG++ G  T      +     KQ RVKF T +H+ KG ++  H D+WGP+ T S GG
Sbjct: 937  LSKRGLLSGQCTGKLNFCEHCVFGKQTRVKFSTGIHKTKGTVDYFHSDLWGPSPTISKGG 996

Query: 815  HHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVK 636
            + + ++F+D+YSR  WV  +  K EVL  +K++K  +E QTG+KI+  + DN    ++  
Sbjct: 997  YRYLLTFIDDYSRKVWVYFLKSKYEVLINFKQFKALIENQTGKKIKRFRTDNG--LEFCS 1054

Query: 635  DPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEALT 456
              F + C  EGI R    R     Q +G+A+ MNRTLLER R + SN+G+    W EA+ 
Sbjct: 1055 GEFNEFCKNEGIVRHRTVRRT--PQQNGVAERMNRTLLERARCMRSNAGLGEEFWAEAVN 1112

Query: 455  YACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRLLFL 279
             AC+L+NR P+ AI  +TP EVWSGS A DY  LR+FGC A + V + +   +A + +FL
Sbjct: 1113 TACYLVNRSPSTAIELKTPEEVWSGSPA-DYSGLRVFGCPAYAHVNEGKLKPRAKKCIFL 1171

Query: 278  GF-RGAYGYKLW--DQGSRRIILRKQVDFDETLVMKS--QSSQYVESKQIGT--VSQPVE 120
            G+ +G  GY+LW  D  S + I+ + V FDE+ +++S   S +  ES ++G   V + VE
Sbjct: 1172 GYGQGVKGYRLWCPDPVSSKFIISRDVTFDESSMLRSTTNSREKEESDRMGDHGVEKQVE 1231

Query: 119  YDATPQSPSITVSRRLPVNEIQRGD 45
                   P+   S +    E+Q  D
Sbjct: 1232 CQVDAPIPTEGTSVQDDQVEVQDSD 1256


>dbj|BAF27642.2| Os11g0157000 [Oryza sativa Japonica Group]
          Length = 1601

 Score =  278 bits (710), Expect = 5e-79
 Identities = 161/441 (36%), Positives = 264/441 (59%), Gaps = 12/441 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MG+ +  ++ G+G ++I+M DG IR +S VR++P +++ +IS+  L+ +G K    +GIL
Sbjct: 330  MGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGIL 389

Query: 1166 RMTKGSLIVMKG-VRRGHLYYLQGS-IEGGTLCTSE---NDDGTLEVWKKRLGLTCIDPV 1002
            ++TKGSL+VMK  ++  +LY+L+G+ I G     S+   N D T  +W  RLG      +
Sbjct: 390  KVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDAT-NLWHMRLGHMTEIGL 448

Query: 1001 RELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASI 822
             EL++RG++DG S       +     K KRVKF+T  H  +GIL+ VH D+WGP +  S 
Sbjct: 449  AELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSF 508

Query: 821  GGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKY 642
            GG  + ++ VD+YSR  W   +  K +  +V+K+WK  VE QT RK++ L+ DN    ++
Sbjct: 509  GGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG--MEF 566

Query: 641  VKDPFRKICLKEGI-RRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVE 465
                F+  C  EGI R   +P   +  Q +G+A+ MNRT++ + R L+SN+G+ +  W E
Sbjct: 567  CSKIFKSYCKSEGIVRHYTVP---HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAE 623

Query: 464  ALTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRL 288
            A++ AC+L+NR P+ AI  +TPIEVWSGS A +Y  LR+FGC A + V + + + +A + 
Sbjct: 624  AVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKC 682

Query: 287  LFLGF-RGAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEY-- 117
            +FLG+  G  GYKLW   ++++++ + V F E++++  + S  V  +     S  VE+  
Sbjct: 683  IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLI 742

Query: 116  --DATPQSPSITVSRRLPVNE 60
                 P+   + +++  PV E
Sbjct: 743  SSGHAPEKEDVAINQDEPVIE 763


>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
 gb|ABA91548.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 2340

 Score =  278 bits (710), Expect = 5e-79
 Identities = 161/441 (36%), Positives = 264/441 (59%), Gaps = 12/441 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MG+ +  ++ G+G ++I+M DG IR +S VR++P +++ +IS+  L+ +G K    +GIL
Sbjct: 537  MGDDTPCEVAGIGTVQIKMFDGCIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGIL 596

Query: 1166 RMTKGSLIVMKG-VRRGHLYYLQGS-IEGGTLCTSE---NDDGTLEVWKKRLGLTCIDPV 1002
            ++TKGSL+VMK  ++  +LY+L+G+ I G     S+   N D T  +W  RLG      +
Sbjct: 597  KVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDAT-NLWHMRLGHMTEIGL 655

Query: 1001 RELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASI 822
             EL++RG++DG S       +     K KRVKF+T  H  +GIL+ VH D+WGP +  S 
Sbjct: 656  AELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSF 715

Query: 821  GGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKY 642
            GG  + ++ VD+YSR  W   +  K +  +V+K+WK  VE QT RK++ L+ DN    ++
Sbjct: 716  GGTRYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG--MEF 773

Query: 641  VKDPFRKICLKEGI-RRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVE 465
                F+  C  EGI R   +P   +  Q +G+A+ MNRT++ + R L+SN+G+ +  W E
Sbjct: 774  CSKIFKSYCKSEGIVRHYTVP---HTPQQNGVAERMNRTIISKARCLLSNAGLPKQFWAE 830

Query: 464  ALTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRL 288
            A++ AC+L+NR P+ AI  +TPIEVWSGS A +Y  LR+FGC A + V + + + +A + 
Sbjct: 831  AVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKC 889

Query: 287  LFLGF-RGAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEY-- 117
            +FLG+  G  GYKLW   ++++++ + V F E++++  + S  V  +     S  VE+  
Sbjct: 890  IFLGYPSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQVEHLI 949

Query: 116  --DATPQSPSITVSRRLPVNE 60
                 P+   + +++  PV E
Sbjct: 950  SSGHAPEKEDVAINQDEPVIE 970


>gb|PNX74094.1| copia LTR rider, partial [Trifolium pratense]
          Length = 876

 Score =  268 bits (686), Expect = 9e-78
 Identities = 161/438 (36%), Positives = 250/438 (57%), Gaps = 11/438 (2%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENG- 1173
            ++G+     I G+G I+I M DG +R ++ VRY+P +RK +IS+G L+  G   R +   
Sbjct: 238  YLGDDKACAITGIGQIKIAMDDGGVRTLTNVRYIPELRKNLISLGTLQENGYSYRSDRDR 297

Query: 1172 -ILRMTKGSLIVMKGVRR-GHLYYLQGSIEGGTLCTSENDDGTLEVWKKRLGLTCIDPVR 999
             IL+++KG+L VM+  R  G++Y L G+   G + + E+D+   ++W  RLG      + 
Sbjct: 298  DILKVSKGALTVMRVKRTAGNIYKLLGNTVVGDVASVESDNDATKLWHLRLGHLSERGMM 357

Query: 998  ELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIG 819
            EL +R ++ GV +            KQ RV+F  + H+ +GIL+ VH DVWGPT+ AS+G
Sbjct: 358  ELHKRSLLKGVCSCKMDLCKYCVLGKQCRVRFKPMKHKTEGILDYVHSDVWGPTREASMG 417

Query: 818  GHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYV 639
            G  +FV+F D++SR  WV  M +K EV   +K WK  VE QTGRKI+ L+ DN    +Y 
Sbjct: 418  GSRYFVTFTDDFSRKLWVYFMKQKSEVFSKFKLWKAEVENQTGRKIKYLRSDNG--TEYT 475

Query: 638  KDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEAL 459
               F K C + GI+R F  R+    Q +G+A+ MN +L ER R L   +G+ +  W E +
Sbjct: 476  NSQFEKFCEQHGIQRHFSVRKT--PQQNGVAERMNMSLTERARCLQLKAGLSKGFWAETI 533

Query: 458  TYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGC----QASCVKDARGDSKAGR 291
              AC+L+NR P A++  +   EVW+G    D   LRIFGC      S    ++ D K+ +
Sbjct: 534  NMACYLINRSPRASLEGKVAEEVWTGK-PIDLDNLRIFGCPTFVHISSEDRSKLDPKSKK 592

Query: 290  LLFLGF-RGAYGYKLWDQGSRRIILRKQVDFDETLVMK-SQSSQYVESK--QIGTVSQPV 123
             +F+G+ +G  G+KLWD  S++++L + V FDE  ++K S+ ++  ES     G     V
Sbjct: 593  CIFVGYSKGVKGFKLWDPVSKKMVLSRDVVFDEQFMLKQSRETEVTESAGGSSGKEVIQV 652

Query: 122  EYDATPQSPSITVSRRLP 69
            E + TP   +  V ++ P
Sbjct: 653  ELEPTPNKNTSAVHQQPP 670


>gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  273 bits (698), Expect = 1e-77
 Identities = 155/442 (35%), Positives = 254/442 (57%), Gaps = 8/442 (1%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGI 1170
            +MGN    +I GVG IR++MHDG +R++ GVR+V  ++K ++SVG L+  G K   E+GI
Sbjct: 320  YMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGI 379

Query: 1169 LRMTKGSLIVMKGVR-RGHLYYLQGSI--EGGTLCTSENDDGTLEVWKKRLGLTCIDPVR 999
            L++ KG+L+VMK  +   +LY L G    E      + + + T  +W +RLG      ++
Sbjct: 380  LKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAASSQEETTMMWHQRLGHMSERGLK 439

Query: 998  ELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIG 819
             LA+R ++ G+        +     KQ R+KF  V  R K IL+++H DVW  +   S+G
Sbjct: 440  VLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW-ESPEISLG 498

Query: 818  GHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYV 639
            G  +FVSF+D+YSR  WV P+ +K +V  V+K +K  +EL+T +KI+ L+ DN G  +Y+
Sbjct: 499  GARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGG--EYI 556

Query: 638  KDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEAL 459
               F   C +EGI R F    A+  Q +G+A+ MNRTLLER R+++  +G+ ++ W EA+
Sbjct: 557  DGEFLAFCKQEGIVRQF--TVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAV 614

Query: 458  TYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASCVKDARG----DSKAGR 291
              AC+++NR P+ AI  +TP+E+W G    DY  L +FGC    + +++     D K+ +
Sbjct: 615  KTACYVINRSPSTAIDLKTPMEMWKGK-PVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673

Query: 290  LLFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEYD 114
             +FLG+     GY+LWD  +R++++ + V F E  +   Q +    SK+   V    +  
Sbjct: 674  CIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDST-SKETAIVQMEEKSK 732

Query: 113  ATPQSPSITVSRRLPVNEIQRG 48
             +  S + +V      +++  G
Sbjct: 733  ESDSSEAESVHEEQEPDDVNDG 754


>gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  273 bits (697), Expect = 1e-77
 Identities = 156/442 (35%), Positives = 253/442 (57%), Gaps = 8/442 (1%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGI 1170
            +MGN    +I GVG IR++MHDG +R++ GVR+V  ++K ++SVG L+  G K   E+GI
Sbjct: 320  YMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGI 379

Query: 1169 LRMTKGSLIVMKGVR-RGHLYYLQGSI--EGGTLCTSENDDGTLEVWKKRLGLTCIDPVR 999
            L++ KG+L+VMK  +   +LY L G    E      + + + T  +W +RLG      ++
Sbjct: 380  LKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLK 439

Query: 998  ELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIG 819
             L +R ++ G+ T      +     KQ R+KF  V  R K IL+++H DVW  +   S+G
Sbjct: 440  VLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVW-ESPEISLG 498

Query: 818  GHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYV 639
            G  +FVSF+D+YSR  WV P+ +K +V  V+K +K  +EL+T +KI+ L+ DN G  +YV
Sbjct: 499  GARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGG--EYV 556

Query: 638  KDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEAL 459
               F   C +EGI R F    A+  Q +G+A+ MNRTLLER R+++  +G+ ++ W EA 
Sbjct: 557  DGEFLAFCKQEGIVRQF--TVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAA 614

Query: 458  TYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASCVKDARG----DSKAGR 291
              AC+++NR P+ AI  +TP+E+W G    DY  L +FGC    + +++     D K+ +
Sbjct: 615  KTACYVINRSPSTAIDLKTPMEMWKGK-PVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRK 673

Query: 290  LLFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEYD 114
             +FLG+     GY+LWD  +R++++ + V F E  +   Q +    SK+   V    +  
Sbjct: 674  CIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDST-SKETAIVQMEEKSK 732

Query: 113  ATPQSPSITVSRRLPVNEIQRG 48
             +  S + +V      +++  G
Sbjct: 733  ESDSSEAESVHEEQEPDDVNDG 754


>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1241

 Score =  271 bits (694), Expect = 3e-77
 Identities = 158/441 (35%), Positives = 261/441 (59%), Gaps = 12/441 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MG+ +  ++ G+G ++I+M DG IR +  VR++P +++ +IS+  L+ +G K    +GIL
Sbjct: 239  MGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGIL 298

Query: 1166 RMTKGSLIVMKG-VRRGHLYYLQGS-IEGGTLCTSE---NDDGTLEVWKKRLGLTCIDPV 1002
            ++TKGSL+VMK  ++  +LY+L+G+ I G     S+   N D T  +W  RLG      +
Sbjct: 299  KVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNSDAT-NLWHMRLGHMSEIGL 357

Query: 1001 RELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASI 822
             EL++RG++DG S       +     K KRVKF+T  H  +GIL+ VH D+WGP +  S 
Sbjct: 358  AELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSF 417

Query: 821  GGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKY 642
            GG  + ++ VD+YSR  W   +  K +  +V+K+WK  VE QT RK++ L+ DN    + 
Sbjct: 418  GGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG--MEL 475

Query: 641  VKDPFRKICLKEGI-RRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVE 465
                F+  C  EGI R   +P   +  Q +G+A+ MNRT++ + R ++SN+ + +  W E
Sbjct: 476  CSKIFKSYCKSEGIVRHYTVP---HTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAE 532

Query: 464  ALTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRL 288
            A++ AC+L+NR P+ AI  +TPIEVWSGS A +Y  LR+FGC A + V + + + +  + 
Sbjct: 533  AVSTACYLINRSPSYAIDKKTPIEVWSGSPA-NYSDLRVFGCTAYAHVDNGKLEPRVIKC 591

Query: 287  LFLGF-RGAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEY-- 117
            +FLG+  G  GYKLW   ++++++ + V F E++++  + S  V  +    VS  VE+  
Sbjct: 592  IFLGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTNVPVESQEKVSVQVEHLI 651

Query: 116  --DATPQSPSITVSRRLPVNE 60
                 P+   + +++  PV E
Sbjct: 652  SSGHAPEKEDVAINQDAPVIE 672


>gb|ACL97385.1| Gag-Pol polyprotein [Medicago truncatula]
          Length = 1305

 Score =  271 bits (694), Expect = 4e-77
 Identities = 150/402 (37%), Positives = 239/402 (59%), Gaps = 8/402 (1%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGI 1170
            +MGN    +I GVG IR++MHDG +R++ GVR+V  ++K ++SVG L+  G K   E+GI
Sbjct: 320  YMGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHSESGI 379

Query: 1169 LRMTKGSLIVMKGVR-RGHLYYLQGSI--EGGTLCTSENDDGTLEVWKKRLGLTCIDPVR 999
            L++ KG+L+VMK  +   +LY L G    E      + + + T  +W +RLG      ++
Sbjct: 380  LKVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQEETTMMWHQRLGHMSERGLK 439

Query: 998  ELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIG 819
             L +R ++ G+ T      +     KQ R+KF  V  R K IL+++H DVW   K  S+G
Sbjct: 440  VLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVWESPK-LSLG 498

Query: 818  GHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYV 639
            G  +FVSF+D+YSR  WV P+ +K +V  V+K +K  +EL+TG+KI+ L+ DN G  +YV
Sbjct: 499  GARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGG--EYV 556

Query: 638  KDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEAL 459
               F   C +EGI R F    A+  Q +G+A+ MNRTLLER R+++  + + ++ W EA+
Sbjct: 557  DGEFLAFCKQEGIVRQF--TVAHTPQQNGVAERMNRTLLERTRAMLKTAEMAKSFWAEAV 614

Query: 458  TYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASCVKDARG----DSKAGR 291
              AC+++NR P+  I  +TP+E+W G    DY  L +FGC    + +++     D K+ +
Sbjct: 615  KTACYVINRSPSTTIDLKTPMEMWKGK-PVDYSSLHVFGCPVYVMYNSQERTKLDPKSRK 673

Query: 290  LLFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSS 168
             +FLG+     GY+LWD  +R++++ + V F E  +   Q +
Sbjct: 674  CIFLGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKN 715


>gb|KYP36645.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1256

 Score =  271 bits (693), Expect = 4e-77
 Identities = 149/401 (37%), Positives = 243/401 (60%), Gaps = 8/401 (1%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MGN    +I GVG I+++M+DG IR + GVR+V  ++K ++S+G L+    K  +E GIL
Sbjct: 271  MGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKCKIHVEGGIL 330

Query: 1166 RMTKGSLIVMKGVR-RGHLYYLQGSI--EGGTLCTSENDDGTLEVWKKRLGLTCIDPVRE 996
            ++ KG+L+VMK  +   +LY L G    E      + + +    +W +RLG      ++ 
Sbjct: 331  KVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKI 390

Query: 995  LAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIGG 816
            LA+R ++ G+        +     KQ R++F  V  R K IL+++H DVW  +   S+GG
Sbjct: 391  LAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW-ESPEISMGG 449

Query: 815  HHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVK 636
              +FVSF+D+YSR  WV P+ +K +V  V+K++K  VEL TG++I+ L+ DN G+  Y+ 
Sbjct: 450  AKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGE--YID 507

Query: 635  DPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEALT 456
              F   C +EGI+R F    A+  Q +G+A+ MNRTLLER R+++  +G+ ++ W EA+ 
Sbjct: 508  GDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVK 565

Query: 455  YACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASCVKDARG----DSKAGRL 288
             AC+L+NR P+ AIG +TP+E+WSG   ++Y  L +FGC    + +++     D K+ + 
Sbjct: 566  TACYLINRSPSTAIGLKTPMEMWSGK-PSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKC 624

Query: 287  LFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSS 168
            +FLG+     GY+LWD  +R++++ + V F ET + K Q +
Sbjct: 625  IFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQKEQEN 665


>gb|KYP53032.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1305

 Score =  271 bits (693), Expect = 5e-77
 Identities = 149/401 (37%), Positives = 243/401 (60%), Gaps = 8/401 (1%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MGN    +I GVG I+++M+DG IR + GVR+V  ++K ++S+G L+    K  +E GIL
Sbjct: 320  MGNDHALEIAGVGTIKLKMYDGTIRTIQGVRHVKGLKKNLLSIGQLDDLKCKIHVEGGIL 379

Query: 1166 RMTKGSLIVMKGVR-RGHLYYLQGSI--EGGTLCTSENDDGTLEVWKKRLGLTCIDPVRE 996
            ++ KG+L+VMK  +   +LY L G    E      + + +    +W +RLG      ++ 
Sbjct: 380  KVVKGNLVVMKAEKITSNLYLLLGETLQEADASVAAISQEEATMMWHRRLGHMSERGLKI 439

Query: 995  LAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIGG 816
            LA+R ++ G+        +     KQ R++F  V  R K IL+++H DVW  +   S+GG
Sbjct: 440  LAERNLLSGLKMVTLPFCEHCVTSKQHRLQFAKVTTRSKHILDLIHSDVW-ESPEISMGG 498

Query: 815  HHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVK 636
              +FVSF+D+YSR  WV P+ +K +V  V+K++K  VEL TG++I+ L+ DN G+  Y+ 
Sbjct: 499  AKYFVSFIDDYSRRLWVYPIKKKSDVFPVFKEFKAQVELDTGKRIKCLRTDNGGE--YID 556

Query: 635  DPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEALT 456
              F   C +EGI+R F    A+  Q +G+A+ MNRTLLER R+++  +G+ ++ W EA+ 
Sbjct: 557  GDFLAFCKQEGIKRQFTV--AHTPQQNGVAERMNRTLLERTRAMLRTAGLAKSFWAEAVK 614

Query: 455  YACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASCVKDARG----DSKAGRL 288
             AC+L+NR P+ AIG +TP+E+WSG   ++Y  L +FGC    + +++     D K+ + 
Sbjct: 615  TACYLINRSPSTAIGLKTPMEMWSGK-PSNYSSLHVFGCPVYVMYNSQERTKLDPKSRKC 673

Query: 287  LFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSS 168
            +FLG+     GY+LWD  +R++++ + V F ET + K Q +
Sbjct: 674  IFLGYADNVKGYRLWDPTARKVVVSRDVVFAETELQKEQEN 714


>gb|AFB73911.1| polyprotein [Citrus sinensis]
          Length = 1309

 Score =  271 bits (693), Expect = 5e-77
 Identities = 148/424 (34%), Positives = 254/424 (59%), Gaps = 7/424 (1%)
 Frame = -1

Query: 1349 HMGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGI 1170
            +MGN    +I G+G I+I+M DG IR +  VR+V  ++K ++S+G +++ G K  +ENGI
Sbjct: 321  YMGNDHALEIAGIGTIKIKMFDGTIRTIGEVRHVNGLKKNLLSLGQMDSHGYKTHVENGI 380

Query: 1169 LRMTKGSLIVMKGVRRG-HLYYLQG-SIEGGTLCTSENDDGTLEVWKKRLGLTCIDPVRE 996
            +++ KG+L++MK  + G +L+ L+G +++    C + N + +  +W  +LG      ++ 
Sbjct: 381  MKIVKGALVLMKVEKIGANLFMLKGETLQEADACVASNGEESTMMWHLKLGHMSEQGLKI 440

Query: 995  LAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASIGG 816
            L++R ++ G+ +      +     KQ R+KF   + R K IL+++H DVW  +   S+GG
Sbjct: 441  LSERKLLPGLKSVSLPFCEHCVTSKQHRLKFSRSIARSKCILDLIHSDVW-ESPDISMGG 499

Query: 815  HHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKYVK 636
              + V+F+D+YSR CWV P+ +K +V  V+K++K  VEL++G+KI+ L+ DN G  +Y  
Sbjct: 500  AKYMVTFIDDYSRRCWVYPIKKKSDVFPVFKEYKAWVELESGKKIKCLRTDNGG--EYTD 557

Query: 635  DPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEALT 456
              F   C +EGI+R F    A   Q +G+A+ MNRTL ER+R+++  +G+  + W EA  
Sbjct: 558  GEFLAFCKQEGIQRQF--TVAYTPQQNGVAERMNRTLTERIRAMLRTAGLPNSFWAEAAK 615

Query: 455  YACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQASCVKDARG----DSKAGRL 288
             AC+++NR P+ AIG +T +E+W+G  A DY  L  FGC    + +A+     D+K+ R 
Sbjct: 616  TACYIVNRSPSTAIGLKTAMEMWTGKPA-DYSYLHAFGCPMYVMYNAQERTKLDAKSRRC 674

Query: 287  LFLGFR-GAYGYKLWDQGSRRIILRKQVDFDETLVMKSQSSQYVESKQIGTVSQPVEYDA 111
            +FLG+  G  GY+LWD  + +I++ + V F E  + +         ++  TV  PV  + 
Sbjct: 675  IFLGYADGVKGYRLWDPTAHKIVISRDVIFVEDQLQRKDGDDGTVKEKSETV--PVYVEN 732

Query: 110  TPQS 99
             P++
Sbjct: 733  NPEN 736


>emb|CAD40363.2| OSJNBa0093P23.9 [Oryza sativa Japonica Group]
          Length = 944

 Score =  267 bits (683), Expect = 7e-77
 Identities = 152/416 (36%), Positives = 253/416 (60%), Gaps = 9/416 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MG+ +  ++ G+G ++I+M DG I  +S VR++P +++ +IS+  L+ +G K    +GIL
Sbjct: 162  MGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGIL 221

Query: 1166 RMTKGSLIVMKG-VRRGHLYYLQGS-IEGGTLCTSE---NDDGTLEVWKKRLGLTCIDPV 1002
            ++TKGSL+VMK  ++  +LY+L+G+ I G     S+   N D T  +W  RLG      +
Sbjct: 222  KVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDAT-NLWHMRLGHMSEIGL 280

Query: 1001 RELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASI 822
             EL++RG++DG S       +     K KRVKF+T  H  +GIL+ VH D+WGP +  S 
Sbjct: 281  AELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSF 340

Query: 821  GGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKY 642
            GG  + ++ VD+YSR  W   +  K +  +V+K+WK  VE QT RK++ L+ DN    ++
Sbjct: 341  GGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG--MEF 398

Query: 641  VKDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEA 462
                F+  C  EGI R + P      Q +G+A+ MNRT++ + R ++SN+G+ +  W  A
Sbjct: 399  CSKIFKSYCKSEGIVRHYTP------QQNGVAERMNRTIISKARCMLSNAGLPKQFWAAA 452

Query: 461  LTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRLL 285
            ++  C+L+NR P+ AI  +TPI+VWSG  A +Y  LR+FGC A + V + + + +A + +
Sbjct: 453  VSTTCYLINRSPSYAIDKKTPIKVWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCI 511

Query: 284  FLGF-RGAYGYKLWDQGSRRIILRKQVDFDETLVM--KSQSSQYVESKQIGTVSQP 126
            FLG+  G  GYKLW   ++++++ + V F E++++  K  ++  VES++  +V  P
Sbjct: 512  FLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQFP 567


>emb|CAH66022.1| OSIGBa0105O19.1 [Oryza sativa]
          Length = 944

 Score =  267 bits (683), Expect = 7e-77
 Identities = 152/416 (36%), Positives = 253/416 (60%), Gaps = 9/416 (2%)
 Frame = -1

Query: 1346 MGNGSTSQIEGVGAIRIRMHDGMIREVSGVRYVPTMRKCIISVGALEAEGLKARIENGIL 1167
            MG+ +  ++ G+G ++I+M DG I  +S VR++P +++ +IS+  L+ +G K    +GIL
Sbjct: 162  MGDDTPCEVAGIGIVQIKMFDGCISTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGIL 221

Query: 1166 RMTKGSLIVMKG-VRRGHLYYLQGS-IEGGTLCTSE---NDDGTLEVWKKRLGLTCIDPV 1002
            ++TKGSL+VMK  ++  +LY+L+G+ I G     S+   N D T  +W  RLG      +
Sbjct: 222  KVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNSDAT-NLWHMRLGHMSEIGL 280

Query: 1001 RELAQRGVIDGVSTYGGIAHDRGQDDKQKRVKFDTVVHRPKGILEVVHVDVWGPTKTASI 822
             EL++RG++DG S       +     K KRVKF+T  H  +GIL+ VH D+WGP +  S 
Sbjct: 281  AELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPARKTSF 340

Query: 821  GGHHWFVSFVDEYSRYCWVAPMSRKGEVLEVYKKWKKCVELQTGRKIQGLQFDNAGKQKY 642
            GG  + ++ VD+YSR  W   +  K +  +V+K+WK  VE QT RK++ L+ DN    ++
Sbjct: 341  GGARYIMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNG--MEF 398

Query: 641  VKDPFRKICLKEGIRRLFIPREANCKQLDGIAKSMNRTLLERVRSLMSNSGVERTLWVEA 462
                F+  C  EGI R + P      Q +G+A+ MNRT++ + R ++SN+G+ +  W  A
Sbjct: 399  CSKIFKSYCKSEGIVRHYTP------QQNGVAERMNRTIISKARCMLSNAGLPKQFWAAA 452

Query: 461  LTYACHLMNRLPNAAIGARTPIEVWSGSVATDYGMLRIFGCQA-SCVKDARGDSKAGRLL 285
            ++  C+L+NR P+ AI  +TPI+VWSG  A +Y  LR+FGC A + V + + + +A + +
Sbjct: 453  VSTTCYLINRSPSYAIDKKTPIKVWSGFPA-NYSDLRVFGCTAYAHVDNGKLEPRAIKCI 511

Query: 284  FLGF-RGAYGYKLWDQGSRRIILRKQVDFDETLVM--KSQSSQYVESKQIGTVSQP 126
            FLG+  G  GYKLW   ++++++ + V F E++++  K  ++  VES++  +V  P
Sbjct: 512  FLGYSSGVKGYKLWCPETKKVVISRNVVFHESVMLHDKPSTNVPVESQEKASVQFP 567