BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00019149
         (1184 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK84483.1| putative copia-like polyprotein [Solanum lycopers...   535   0.0  
emb|CAN60947.1| hypothetical protein VITISV_015758 [Vitis vinifera]   524   e-172
gb|AQY61300.1| Pol [Coffea eugenioides]                               519   e-171
gb|AQY61302.1| Pol [Vitis vinifera]                                   513   e-168
gb|AQY61299.1| Pol [Coffea canephora]                                 509   e-168
gb|AQY61295.1| Pol [Coffea arabica]                                   503   e-165
emb|CAN68598.1| hypothetical protein VITISV_003488 [Vitis vinifera]   489   e-160
dbj|BAA97087.1| copia-type pol polyprotein-like [Arabidopsis tha...   480   e-157
gb|PRQ53193.1| putative RNA-directed DNA polymerase [Rosa chinen...   473   e-156
gb|OTF85594.1| putative ribonuclease H-like domain-containing pr...   474   e-155
gb|AAF67380.1| Hypothetical protein T15F17.l [Arabidopsis thaliana]   475   e-155
gb|AQY61293.1| Gag-Pol [Arabidopsis thaliana]                         480   e-153
ref|XP_004309292.1| PREDICTED: uncharacterized protein LOC101304...   447   e-151
gb|AAS79613.1| putative copia-like polyprotein [Ipomoea trifida]      466   e-151
dbj|BAF36296.1| hypothetical protein [Ipomoea trifida]                466   e-150
gb|PRQ59184.1| putative RNA-directed DNA polymerase [Rosa chinen...   451   e-149
gb|AFP55536.1| retrotransposon polyprotein [Rosa rugosa]              469   e-149
gb|PRQ16677.1| putative RNA-directed DNA polymerase [Rosa chinen...   459   e-147
emb|CAN71782.1| hypothetical protein VITISV_028677 [Vitis vinifera]   445   e-141
gb|KYP77193.1| Retrovirus-related Pol polyprotein from transposo...   419   e-139

>gb|AAK84483.1| putative copia-like polyprotein [Solanum lycopersicum]
          Length = 779

 Score =  535 bits (1378), Expect = 0.0
 Identities = 263/388 (67%), Positives = 309/388 (79%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            +FGC VYVPIAPPQRTKMGPQRRLGIYVGYESPSII+YLEP TGD+F  RFADCHF+E++
Sbjct: 127  VFGCAVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIKYLEPMTGDLFKVRFADCHFDESV 186

Query: 182  FPALGGEKKQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKRVT 361
            +P LGGE K L KEI W+  SL HLDP T QCE EVQ+I++LQ IANQLPDAFT+  R+T
Sbjct: 187  YPTLGGEHKSLGKEIDWNSSSLSHLDPRTNQCEQEVQRIIYLQNIANQLPDAFTNLPRIT 246

Query: 362  KSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDPNME 541
            KS+IPAVNAP R++IP G+   +  NES+  LKRGRPIGSKDKNPRKRKG N  DD  ++
Sbjct: 247  KSYIPAVNAPVRVDIPTGQI--VKANESRPHLKRGRPIGSKDKNPRKRKGINDQDDHGLK 304

Query: 542  ECVPEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFSYSVACD 721
            E   +ETQ  T+ E           +N EIS++YV+T   WNRN +  ID  F+Y+VA +
Sbjct: 305  EISQDETQVITHDE-----EEVRTSQNNEISMNYVSTRKFWNRNNVV-IDNIFAYNVAIE 358

Query: 722  IANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVGYKWV 901
            I    ED EP+SV EC+ R DW KWKDAIQAEL SL KR+ FGPI+ TPE ++PVGYKW+
Sbjct: 359  IMQQDEDSEPKSVHECRQRNDWPKWKDAIQAELASLEKRESFGPIIRTPEGIKPVGYKWI 418

Query: 902  FVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNLEMRL 1081
            FVRKRNEK E++RYKARLVAQGFSQRPGIDY ETYSPV+DAITFRYLI+LAV + LEMRL
Sbjct: 419  FVRKRNEKGEVMRYKARLVAQGFSQRPGIDYMETYSPVVDAITFRYLINLAVYEKLEMRL 478

Query: 1082 MDVVTAYLYGSLDSDIYMKIPEGFKMPE 1165
            MDVVTAYLYGSLD +I+MKIPE FK+PE
Sbjct: 479  MDVVTAYLYGSLDHNIFMKIPEAFKVPE 506


>emb|CAN60947.1| hypothetical protein VITISV_015758 [Vitis vinifera]
          Length = 1306

 Score =  524 bits (1349), Expect = e-172
 Identities = 260/402 (64%), Positives = 311/402 (77%), Gaps = 8/402 (1%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAP Q TKMGPQRRLG+YVG++SPSII YLEP  GDVFTARFADCHFNE++
Sbjct: 598  IFGCAVYVPIAPTQXTKMGPQRRLGVYVGFDSPSIIXYLEPLXGDVFTARFADCHFNESV 657

Query: 182  FPALGGEKKQLE--KEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKR 355
            FP+LG EK   E  +EI+W   ++ HLDP T QCELEVQ+I+HLQ + NQLPDAF DTK+
Sbjct: 658  FPSLGREKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLXNQLPDAFIDTKK 717

Query: 356  VTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKH---- 523
            VTKSHIPA N PARI++P G+    +TNES+ RLKRGRP+GSKD +  +      H    
Sbjct: 718  VTKSHIPAANTPARIDVPVGQ----LTNESKIRLKRGRPVGSKDVHIEQEAPEEAHIEQE 773

Query: 524  --DDPNMEECVPEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEK 697
              +DP++E   PEE Q                 EN EIS+ YV TG  W+RN +  I+  
Sbjct: 774  TPEDPHIEREAPEEAQVP---------------ENCEISVSYVQTGEKWDRNNIV-INNI 817

Query: 698  FSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAV 877
            F++ VA DI    EDPEPR+V EC++R DW KWK+ IQAELNSL KR+VFGP+V TPE V
Sbjct: 818  FAFQVASDIIRNDEDPEPRNVEECRHRNDWPKWKEXIQAELNSLTKREVFGPVVQTPEDV 877

Query: 878  RPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAV 1057
            +PVGYKWVFVRKRNE NEI+RYKARLVAQGFSQRPGIDY+ETYSPVMDAITFR+LI LAV
Sbjct: 878  KPVGYKWVFVRKRNENNEIIRYKARLVAQGFSQRPGIDYEETYSPVMDAITFRFLISLAV 937

Query: 1058 SKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            S+ L+MRLMDV+TAYLYGS+D+DIYMKIPEGFK+P+A+++KP
Sbjct: 938  SEGLDMRLMDVITAYLYGSMDNDIYMKIPEGFKLPDANNTKP 979


>gb|AQY61300.1| Pol [Coffea eugenioides]
          Length = 1160

 Score =  519 bits (1336), Expect = e-171
 Identities = 264/396 (66%), Positives = 315/396 (79%), Gaps = 2/396 (0%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAPPQR K+ PQRRLGIYVGYESPSII+Y+EP TGD+FTARFADCHF+E+ 
Sbjct: 388  IFGCAVYVPIAPPQRRKLSPQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESH 447

Query: 182  FPALGGEKKQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKRVT 361
            FP LGG+K Q +KEITW + SL  LD  TK+CELEVQ+I+HLQ+IANQLPDAF D+KRVT
Sbjct: 448  FPTLGGDKNQPKKEITW-KISLNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVT 506

Query: 362  KSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDPNME 541
            KSHIPA NAP +I++P+G+  +   NES+ RLKRGRP+GSKDKNPRK++G    D+  + 
Sbjct: 507  KSHIPAENAPIKIDVPEGQITS--ANESKARLKRGRPLGSKDKNPRKKRGV---DESTIS 561

Query: 542  ECV--PEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFSYSVA 715
            + +  PEE   K  +  L      E  E +E SI++V +   WNR E+  ID  F+Y++A
Sbjct: 562  DKIQPPEEVAPK--EPIL------EENEIMENSINFVTSKKSWNRKEII-IDNIFAYNIA 612

Query: 716  CDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVGYK 895
             DI    ED EPRSV EC+ R DW KWKDAIQ+EL+SL KRKVFGP+V TPE V+PVGYK
Sbjct: 613  LDIMAEDEDHEPRSVDECRGRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYK 672

Query: 896  WVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNLEM 1075
            WVFVRKRNEKNEIVRYKARLVAQGFSQRPG DYDETYSPV+DAITFRYL+  AV + L+M
Sbjct: 673  WVFVRKRNEKNEIVRYKARLVAQGFSQRPGFDYDETYSPVVDAITFRYLVSFAVHEKLDM 732

Query: 1076 RLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            RLMDVVTAYLYG+L++DIY++IPEGF MPEA  S P
Sbjct: 733  RLMDVVTAYLYGNLENDIYIRIPEGFNMPEACKSNP 768


>gb|AQY61302.1| Pol [Vitis vinifera]
          Length = 1223

 Score =  513 bits (1320), Expect = e-168
 Identities = 264/434 (60%), Positives = 321/434 (73%), Gaps = 40/434 (9%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAP Q TKMGPQRRLG+YVG++SPSIIRYLEP TGDVFTARFADCHFNE++
Sbjct: 396  IFGCAVYVPIAPTQHTKMGPQRRLGVYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESV 455

Query: 182  FPALGGEKKQLE--KEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKR 355
            FP+LG EK   E  +EI+W   ++ HLDP T QCELEVQ+I+HLQ +ANQLPDAF DTK+
Sbjct: 456  FPSLGREKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKK 515

Query: 356  VTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANK----- 520
            VTKSHIPA N PARI++P G+    +TNES+ RLKRGR +GSKD  P KR+   K     
Sbjct: 516  VTKSHIPAANTPARIDVPVGQ----LTNESKIRLKRGRLVGSKDVIPWKRRTQEKLGTLE 571

Query: 521  --------------------------HDDPNMEECVPEETQDKTNQETLDVVN----SPE 610
                                       ++ ++E+  PEE      QETL+  +    +PE
Sbjct: 572  EAIKMTDQFKIDKSIALEEAQIMQKTPEEVHIEQEAPEEAH--IEQETLEDPHIEREAPE 629

Query: 611  GK---ENLEISIDYVNTGGLWNRNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQ 781
                 EN EIS+ YV TG  W+RN +  I+  F++ VA DI    EDPEPR+V EC++R 
Sbjct: 630  EAQVPENCEISVSYVQTGEKWDRNNIV-INNIFAFQVASDIIRNDEDPEPRNVEECRHRN 688

Query: 782  DWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVA 961
            DW KWK+AIQAELNSL KR+VFG +V TP+ V+PVGYKWVFVRKRNE NEI+RYKARLVA
Sbjct: 689  DWPKWKEAIQAELNSLTKREVFGHVVQTPKDVKPVGYKWVFVRKRNENNEIIRYKARLVA 748

Query: 962  QGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKI 1141
            QGFSQRPGIDY+ETYSPVMD ITFR+LI LA+S+ L+MRLMDV+TAYLYGS+D+DIYMKI
Sbjct: 749  QGFSQRPGIDYEETYSPVMDTITFRFLISLAISEGLDMRLMDVITAYLYGSMDNDIYMKI 808

Query: 1142 PEGFKMPEASSSKP 1183
            PEGFK+ +A+++KP
Sbjct: 809  PEGFKLSDANNTKP 822


>gb|AQY61299.1| Pol [Coffea canephora]
          Length = 1160

 Score =  509 bits (1312), Expect = e-168
 Identities = 262/396 (66%), Positives = 312/396 (78%), Gaps = 2/396 (0%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAP QR K+G QRRLGIYVGYESPSII+Y+EP TGD+FTARFADCHF+E+ 
Sbjct: 388  IFGCAVYVPIAPLQRRKLGLQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESH 447

Query: 182  FPALGGEKKQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKRVT 361
            FP LGG+K Q +KEITW + SL  LD  TK+CELEVQ+I+HLQ+IANQLPDAF D+KRVT
Sbjct: 448  FPTLGGDKNQPKKEITW-KISLNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVT 506

Query: 362  KSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDPNME 541
            KSHIPA NAP +I++P+ +  +   NES+ RLKRGRP+GSKDKNPRK++G    D+  + 
Sbjct: 507  KSHIPAENAPIKIDVPEEQITS--ANESKARLKRGRPLGSKDKNPRKKRGI---DESTIS 561

Query: 542  ECV--PEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFSYSVA 715
            + +  PEE   K  +  L      E  E +E SI++V +   WNR E+  ID  F+Y++A
Sbjct: 562  DKIQPPEEVAPK--EPIL------EENETIENSINFVTSRKSWNRKEII-IDNIFAYNIA 612

Query: 716  CDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVGYK 895
             DI    ED EPRSV EC+ R DW KWKDAIQ+EL+SL KRKVFGP+V TPE V+PVGYK
Sbjct: 613  LDIMAEDEDHEPRSVDECRGRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYK 672

Query: 896  WVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNLEM 1075
            WVFVRKRNEKNEIVRYKARLVAQGFSQRP  DYDETYSPV+DAITFRYL+  AV + L+M
Sbjct: 673  WVFVRKRNEKNEIVRYKARLVAQGFSQRPRFDYDETYSPVVDAITFRYLVSFAVHEKLDM 732

Query: 1076 RLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            RLMDVVTAYLYG+L++DIYM+IPEGF MPEA  S P
Sbjct: 733  RLMDVVTAYLYGNLENDIYMRIPEGFNMPEACKSNP 768


>gb|AQY61295.1| Pol [Coffea arabica]
          Length = 1160

 Score =  503 bits (1296), Expect = e-165
 Identities = 259/396 (65%), Positives = 311/396 (78%), Gaps = 2/396 (0%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAPPQR K+G QRRLGIYVGYESPSII+Y+EP TGD+FTARFADCHF+E+ 
Sbjct: 388  IFGCAVYVPIAPPQRRKLGLQRRLGIYVGYESPSIIKYMEPLTGDLFTARFADCHFDESH 447

Query: 182  FPALGGEKKQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKRVT 361
            F  LGG+K Q +KEITW + SL  LD  TK+CELEVQ+I+HLQ+IANQLPDAF D+KRVT
Sbjct: 448  FSTLGGDKNQPKKEITW-KISLNFLDSRTKECELEVQRIIHLQKIANQLPDAFNDSKRVT 506

Query: 362  KSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDPNME 541
            KSHIPA NAP +I++P+ +  +   NES+ RLKRGRP+GSKDKNPRK++   + D+  + 
Sbjct: 507  KSHIPAENAPIKIDVPEEQITS--ANESKARLKRGRPLGSKDKNPRKKR---EIDESTIS 561

Query: 542  ECV--PEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFSYSVA 715
            + +  PEE   K  +  L      E  E +E SI+++ +   WNR E+  ID  F+Y++A
Sbjct: 562  DKIQPPEEVAPK--EPIL------EENETIENSINFITSRKSWNRKEII-IDNIFAYNIA 612

Query: 716  CDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVGYK 895
             DI    ED E RSV EC+ R DW KWKDAIQ+EL+SL KRKVFGP+V TPE V+PVGYK
Sbjct: 613  LDIMAEDEDHELRSVDECRGRNDWPKWKDAIQSELDSLAKRKVFGPVVQTPEGVKPVGYK 672

Query: 896  WVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNLEM 1075
            WVFVRKRNEKNEIVRYKARLVAQGFSQRPG DYDETYSPV+DAITFRYL+  AV + L+M
Sbjct: 673  WVFVRKRNEKNEIVRYKARLVAQGFSQRPGFDYDETYSPVVDAITFRYLVSFAVHEKLDM 732

Query: 1076 RLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            RLMDVVTAYLYG+L++DIYM+I EGF MPEA  S P
Sbjct: 733  RLMDVVTAYLYGNLENDIYMRISEGFNMPEACKSNP 768


>emb|CAN68598.1| hypothetical protein VITISV_003488 [Vitis vinifera]
          Length = 1146

 Score =  489 bits (1260), Expect = e-160
 Identities = 252/422 (59%), Positives = 308/422 (72%), Gaps = 28/422 (6%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAP QRTKMGP RRLG YVG++SPSIIRYLEP TGDVFTARFADCHFNE++
Sbjct: 364  IFGCAVYVPIAPTQRTKMGPXRRLGXYVGFDSPSIIRYLEPLTGDVFTARFADCHFNESV 423

Query: 182  FPALGGEKKQLE--KEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKR 355
            FP+LG EK   E  +EI+W   ++ HLDP T QCELEVQ+I+HLQ +ANQLPDAF DTK+
Sbjct: 424  FPSLGXEKSIPEERREISWKTSTMTHLDPRTNQCELEVQRIIHLQNLANQLPDAFIDTKK 483

Query: 356  VTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDPN 535
            VTKSHIPA N PARI++P G+    +TNES+ RLKRGRP  +++K     +     D   
Sbjct: 484  VTKSHIPAANTPARIDVPVGQ----LTNESKIRLKRGRPRRTQEKLGTLEEAIKMTDQFK 539

Query: 536  MEECV-----------PEETQDKTNQETLDVVNSPEGKEN------LEISI--------- 637
            +++ +           PEE   +       ++N    K +      L+I I         
Sbjct: 540  IDKSIALEEAQIMQKAPEEAHIEQEALKRYILNKKPPKRHILNKKPLKIXILNEKPLKRH 599

Query: 638  DYVNTGGLWNRNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAE 817
             YV TG  W+RN +  I+  F++ VA DI    EDPEPR+  EC++R D  KWK+AIQAE
Sbjct: 600  XYVQTGEKWDRNNIV-INNIFAFQVASDIIRNDEDPEPRNXEECRHRNDXPKWKEAIQAE 658

Query: 818  LNSLNKRKVFGPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYD 997
            LNSL KR+VFGP+V TPE V+PVGYKWVFVRKRNE NEI+RYKARLVAQGFS RPGIDY+
Sbjct: 659  LNSLTKREVFGPVVQTPEDVKPVGYKWVFVRKRNENNEIIRYKARLVAQGFSXRPGIDYE 718

Query: 998  ETYSPVMDAITFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSS 1177
             TYSPVMDAITFR+LI LAVS+ L+MR MDV+TAYLYGS+D+DIYMKIPEGFK+P+A+++
Sbjct: 719  XTYSPVMDAITFRFLISLAVSEGLDMRXMDVITAYLYGSMDNDIYMKIPEGFKLPDANNT 778

Query: 1178 KP 1183
            KP
Sbjct: 779  KP 780


>dbj|BAA97087.1| copia-type pol polyprotein-like [Arabidopsis thaliana]
          Length = 1123

 Score =  480 bits (1236), Expect = e-157
 Identities = 239/392 (60%), Positives = 299/392 (76%), Gaps = 7/392 (1%)
 Frame = +2

Query: 5    FGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAIF 184
            FGC VYVPIAPPQRTKMGPQRR+GIYVG++SP+II+YLEP TGD+F AR+ADCHF+E+ F
Sbjct: 361  FGCAVYVPIAPPQRTKMGPQRRMGIYVGFDSPTIIKYLEPTTGDLFKARYADCHFSESEF 420

Query: 185  PALGGEKKQLEKEI---TWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKR 355
            PALGGE  +L KEI    W++ SL   DP T  C+ EV KI+HLQ++AN+LPD+F D+KR
Sbjct: 421  PALGGETNKLGKEIKEIAWNQTSLNWQDPRTLMCDSEVHKIIHLQKLANELPDSFADSKR 480

Query: 356  VTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRK----GANKH 523
            V KS+IPA NAP RI+I KG   N++  ES  + K GRP+GSKDKNPRK K    G    
Sbjct: 481  VVKSYIPACNAPVRIDIQKGI--NVIATESNPQKKHGRPVGSKDKNPRKTKKGVMGTEVK 538

Query: 524  DDPNMEECVPEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFS 703
            +  +M    P+E  ++         + PEG +N EISI+Y+ +G  WNR E+ D+DEKF+
Sbjct: 539  ETIDMAAASPKEPPNEIRDAE---AHGPEGIDNDEISINYIMSGIKWNRKEV-DVDEKFA 594

Query: 704  YSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRP 883
            Y VA +I   SED EP S+ EC  R DW KWK+AI  EL SL +R VFGPI+ TP  ++P
Sbjct: 595  YEVAYEI---SEDHEPTSIIECTQRSDWLKWKEAIDVELGSLKRRDVFGPILRTPSNIKP 651

Query: 884  VGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSK 1063
            VG+KWVFVRKRNEKNEIVR+KARLVAQGFSQRPG+DY+ETYSPV+DA TFRYLI LA+ +
Sbjct: 652  VGHKWVFVRKRNEKNEIVRHKARLVAQGFSQRPGVDYEETYSPVVDATTFRYLISLAIRE 711

Query: 1064 NLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKM 1159
            NL++RLMDVVTAYLYG LD++IYM++PEG ++
Sbjct: 712  NLDLRLMDVVTAYLYGPLDNEIYMRLPEGIEL 743


>gb|PRQ53193.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 945

 Score =  473 bits (1218), Expect = e-156
 Identities = 246/419 (58%), Positives = 301/419 (71%), Gaps = 25/419 (5%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC +YVPI PPQRTKMGPQRR+ IYVGYESP+I+RYLEP TGD+FTARFADCHF+E +
Sbjct: 238  IFGCTIYVPITPPQRTKMGPQRRISIYVGYESPTIVRYLEPLTGDLFTARFADCHFDETV 297

Query: 182  FPALGGEK----KQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDT 349
            FP+LGG+K    +Q  +E++WS P++ HLDPHT Q ELEV++I+ LQ +A+ LPDAF+D 
Sbjct: 298  FPSLGGDKNTNVQQERQELSWSVPTMSHLDPHTAQSELEVRRIIELQNVADTLPDAFSDI 357

Query: 350  KRVTKSHIPAVNAPARIEIPKG----------------KSENIVTNESQTRLKRGRPIGS 481
             +VT+SHIPA N PARI++P                     N+ +       KRGRPIGS
Sbjct: 358  AKVTRSHIPAANVPARIDVPNNGHNATPLTLGDGTIAQHGNNVASMAVGPARKRGRPIGS 417

Query: 482  KDKNPRKRKGANKHDDPNMEECVP--EETQDKTN-QETL--DVVNSPEGKENLEISIDYV 646
            KD  PRKR    + +   ++   P  E   D    QET   D   S    EN+EIS++Y 
Sbjct: 418  KDTRPRKRANEAQINPLIIDTQNPSHENVPDYGYVQETSLGDASVSEPIHENIEISVNYT 477

Query: 647  NTGGLWNRNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNS 826
            +  G W RN +  ID+ F+YSVA +I   ++D EPRSV ECQ R DW KWKDAIQAEL+S
Sbjct: 478  SVHGTWERNSII-IDDVFAYSVAREIIE-TDDIEPRSVDECQRRADWPKWKDAIQAELDS 535

Query: 827  LNKRKVFGPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETY 1006
            L KRKVFG IV  P   +PVG+KWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDY+ETY
Sbjct: 536  LTKRKVFGKIVPIPPNTKPVGHKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYEETY 595

Query: 1007 SPVMDAITFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            SPVMD ITFRYL+ L VS+ L M+LMDVVTAYLYG LD++IYM IP+G ++P++S S P
Sbjct: 596  SPVMDVITFRYLVSLVVSEKLNMQLMDVVTAYLYGDLDTEIYMNIPDGIQLPKSSGSNP 654


>gb|OTF85594.1| putative ribonuclease H-like domain-containing protein [Helianthus
            annuus]
          Length = 1094

 Score =  474 bits (1219), Expect = e-155
 Identities = 246/411 (59%), Positives = 302/411 (73%), Gaps = 17/411 (4%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPI PPQRT M PQRRLGIY+G+ SPSII+YLEP TGD+FT R+ADCHF+E +
Sbjct: 359  IFGCAVYVPIPPPQRTTMAPQRRLGIYIGFNSPSIIKYLEPMTGDMFTTRYADCHFDETM 418

Query: 182  FPALGGEKKQ---LEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTK 352
            FP LGG+K +   + +EITW+  SL +LDP + QCE EVQKI+HLQ IAN+LPDAFTDT 
Sbjct: 419  FPVLGGDKNKERLVTQEITWNASSLSNLDPRSGQCEYEVQKIIHLQRIANELPDAFTDTN 478

Query: 353  RVTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRK------GA 514
            RVTKSH+PA NAPARIE+        +      + KRGR IGSKDKNPRKRK      G 
Sbjct: 479  RVTKSHVPASNAPARIEV--------IPEAITIQRKRGRQIGSKDKNPRKRKEQSNAVGE 530

Query: 515  NKH---DDPNMEECVPEET-----QDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNR 670
            N     ++  +E  V EET     +D+ ++ET      P   EN EISI+YV    +WNR
Sbjct: 531  NSQKVINETPVEVNVLEETTIIPEEDEVSEET------PVPNEN-EISINYVQDSTMWNR 583

Query: 671  NEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFG 850
            N+   +D+ F+Y++A D+ N   D  P+++ EC +R DW +W++AI AELNSL KR VFG
Sbjct: 584  NKTR-VDDIFAYAIATDVIN-ENDYVPKTLEECMHRNDWPRWQEAINAELNSLKKRHVFG 641

Query: 851  PIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAIT 1030
            P+V TP  V+PVGYKWVF  KRNEKNEIVRYKARLVAQGFSQ PG+DY+ETYSPV+DAIT
Sbjct: 642  PVVRTPIDVKPVGYKWVFAIKRNEKNEIVRYKARLVAQGFSQIPGVDYEETYSPVVDAIT 701

Query: 1031 FRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
             R+LI L +S+ L MRLMDVVTAYLYG+L++DIYMKIP+G K+PEA  S P
Sbjct: 702  LRFLIGLTISEGLHMRLMDVVTAYLYGTLENDIYMKIPKGLKLPEALKSTP 752


>gb|AAF67380.1| Hypothetical protein T15F17.l [Arabidopsis thaliana]
          Length = 1141

 Score =  475 bits (1222), Expect = e-155
 Identities = 238/392 (60%), Positives = 297/392 (75%), Gaps = 7/392 (1%)
 Frame = +2

Query: 5    FGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAIF 184
            FGC VYVPIAPPQRTKMGPQRR+GIYVG++SP+II+YLEP TGD+F AR+ADCHF+E+ F
Sbjct: 361  FGCAVYVPIAPPQRTKMGPQRRMGIYVGFDSPTIIKYLEPTTGDLFKARYADCHFSESEF 420

Query: 185  PALGGEKKQLEKEI---TWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKR 355
            PALGGE  +L KEI    W++ SL   DP T  C+ EV KI+HLQ++AN+LPD+F D KR
Sbjct: 421  PALGGETNKLGKEIKEIAWNQTSLNWQDPQTLMCDSEVHKIIHLQKLANELPDSFADPKR 480

Query: 356  VTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRK----GANKH 523
            V KS+IPA NA  RI+I KG   N++  ES  + KRGRP+GSKDK PRK K    G    
Sbjct: 481  VVKSYIPACNAQVRIDIQKGI--NVIATESNPQKKRGRPVGSKDKIPRKTKKGAMGTEVK 538

Query: 524  DDPNMEECVPEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFS 703
            +  +M    P+E  ++         + PEG +N EISI+Y+ +G  WNR E+ D+DEKF+
Sbjct: 539  ETIDMAAASPKEPPNEIRDAE---AHGPEGIDNDEISINYIMSGIKWNRKEV-DVDEKFA 594

Query: 704  YSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRP 883
            Y VA +I   +ED EP S+ EC  R DW KWK+AI  EL SL KR VFGPI+ TP  ++P
Sbjct: 595  YEVAYEI---NEDHEPTSIIECTQRSDWLKWKEAIDVELGSLKKRDVFGPILRTPSNIKP 651

Query: 884  VGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSK 1063
            VG+KWVFVRKRNEKNEIVR+KARLVAQGFSQRPG+DY+ETYSPV+DA TFRYLI LA+ +
Sbjct: 652  VGHKWVFVRKRNEKNEIVRHKARLVAQGFSQRPGVDYEETYSPVVDATTFRYLISLAIRE 711

Query: 1064 NLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKM 1159
            NL++RLMDVVTAYLYG LD++IYM++PEG ++
Sbjct: 712  NLDLRLMDVVTAYLYGPLDNEIYMRLPEGIEL 743


>gb|AQY61293.1| Gag-Pol [Arabidopsis thaliana]
          Length = 1552

 Score =  480 bits (1235), Expect = e-153
 Identities = 238/390 (61%), Positives = 300/390 (76%), Gaps = 4/390 (1%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAPPQRTKMGPQRR+GIYVG++SP+II+YLEP TGD+F AR+ADCHF+E+ 
Sbjct: 769  IFGCAVYVPIAPPQRTKMGPQRRMGIYVGFDSPTIIKYLEPTTGDLFKARYADCHFSESE 828

Query: 182  FPALGGEKKQLEKEI---TWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTK 352
            FPALGGE  +L KEI    W++ SL   DP T  C+ EV KI+HLQ++AN+LPD+F D K
Sbjct: 829  FPALGGETNKLGKEIKEIAWNQTSLNWQDPRTLMCDSEVHKIIHLQKLANELPDSFADPK 888

Query: 353  RVTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRK-RKGANKHDD 529
            RV KS+IPA NAP RI+I KG   N++  +S  + KRGRP+GSKDKNPRK +KGA   + 
Sbjct: 889  RVVKSYIPACNAPVRIDIQKGI--NVIATKSNPQKKRGRPVGSKDKNPRKTKKGAMGTEV 946

Query: 530  PNMEECVPEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFSYS 709
                +      ++  N+      + PEG +N EISI+Y+ +G  WNR E+ D+DEKF+Y 
Sbjct: 947  KETIDMAAASPKEPPNEIWDAEAHGPEGIDNDEISINYIMSGIKWNRKEV-DVDEKFAYE 1005

Query: 710  VACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVG 889
            VA +I   +ED EP S+ EC  R DW KWK+AI  EL SL +R VFGPI+ TP  ++PVG
Sbjct: 1006 VAYEI---NEDHEPTSIIECTQRSDWLKWKEAIDVELGSLKRRDVFGPILRTPSNIKPVG 1062

Query: 890  YKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNL 1069
            +KWVFVRKRNEKNEIVR+KARLVAQGFSQRPG+DY+ETYSPV+DA TFRYLI LA+ +NL
Sbjct: 1063 HKWVFVRKRNEKNEIVRHKARLVAQGFSQRPGVDYEETYSPVVDATTFRYLISLAIRENL 1122

Query: 1070 EMRLMDVVTAYLYGSLDSDIYMKIPEGFKM 1159
            ++RLMDVVTAYLYG LD++IYM++PEG ++
Sbjct: 1123 DLRLMDVVTAYLYGPLDNEIYMRLPEGIEL 1152


>ref|XP_004309292.1| PREDICTED: uncharacterized protein LOC101304635, partial [Fragaria
            vesca subsp. vesca]
          Length = 521

 Score =  447 bits (1150), Expect = e-151
 Identities = 234/421 (55%), Positives = 299/421 (71%), Gaps = 27/421 (6%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPI PP R+KMGP RRLGIYVGYES +IIRYLEP TGD+FTARFADCHF+E +
Sbjct: 37   IFGCSVYVPITPPLRSKMGPHRRLGIYVGYESLTIIRYLEPLTGDLFTARFADCHFDETL 96

Query: 182  FPALGGEKKQLE----KEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDT 349
            FP+LGG+  + +    +E++W  P+L H DPHT Q E EV+ I+ LQ++A+ +PD+F++ 
Sbjct: 97   FPSLGGDTNKRDHVERQELSWFVPTLSHYDPHTSQSEREVKCILELQKVADTMPDSFSEI 156

Query: 350  KRVTKSHIPAVNAPARIEIPK--------------GKSENIVTNESQTRLKRGRPIGSKD 487
             +VT+S IPA N PAR+E+P+              G +          + KRGRP GS D
Sbjct: 157  AKVTRSDIPAANVPARLEVPRKGTAIPGLGTAAVDGAAHGGGMEAVAPQRKRGRPPGSVD 216

Query: 488  KNPRKRKGANKHDDP---NMEECVPEETQDKTNQETLDVVN------SPEGKENLEISID 640
              PRK+       +P   ++E    E   D +    L + +      S    EN+EIS+ 
Sbjct: 217  MRPRKKLTDKAQVNPLIIDVENPSHEIISDYSYVHELILESMGYASGSMSTSENIEISMC 276

Query: 641  YVNTGGLWNRNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAEL 820
            Y NT  L NR+    +D+ F+YSVA +I    +D EPRSVAECQNR DW KWK AIQAEL
Sbjct: 277  YDNTYELMNRSSTH-VDDIFAYSVAHEIIE-HDDIEPRSVAECQNRADWPKWKVAIQAEL 334

Query: 821  NSLNKRKVFGPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDE 1000
            +SL KR+VFGP++LTP +V+PVG+KWVFVRKRNEKNE++ YKARLVAQGFSQRPGIDY+E
Sbjct: 335  DSLTKRQVFGPVMLTPPSVKPVGHKWVFVRKRNEKNEVLLYKARLVAQGFSQRPGIDYEE 394

Query: 1001 TYSPVMDAITFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSK 1180
            TYSPVMD ITFRYL+ L VS+ L+M+LMDVVTAYLYG LDS+IYMK+P+G  +P++S+SK
Sbjct: 395  TYSPVMDVITFRYLVSLVVSEKLDMQLMDVVTAYLYGDLDSEIYMKVPDGITLPKSSNSK 454

Query: 1181 P 1183
            P
Sbjct: 455  P 455


>gb|AAS79613.1| putative copia-like polyprotein [Ipomoea trifida]
          Length = 1190

 Score =  466 bits (1199), Expect = e-151
 Identities = 236/405 (58%), Positives = 296/405 (73%), Gaps = 18/405 (4%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            +FGC VY PI P  RT MGPQR+LGIYVGYESPSII+YLEP TGD FTAR+ADC F+E  
Sbjct: 380  VFGCAVYTPIPPTNRTSMGPQRKLGIYVGYESPSIIKYLEPMTGDQFTARYADCIFDEDH 439

Query: 182  FPALGGEKKQLE---KEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTK 352
            FPALGG+K       +EI+W E  L +LDP T Q ELEVQKI++LQ +AN LPDAFTD +
Sbjct: 440  FPALGGDKSPYLTKCREISWDEKDLQYLDPRTSQTELEVQKIINLQNLANNLPDAFTDNR 499

Query: 353  RVTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDP 532
             VT+SHIPAVNAP+R+E+PKG   +  T   Q   KRGRP+G+KD NPRK +        
Sbjct: 500  GVTRSHIPAVNAPSRVEVPKGSGMHTDTPHRQ---KRGRPVGAKDLNPRKTRIGKISQSL 556

Query: 533  NMEECVPEETQDKTNQETLDVVNSPEGKE---------------NLEISIDYVNTGGLWN 667
                  PE+ +   +   L+ +N+   +                N+E +I++V+TG  +N
Sbjct: 557  PKNFSRPEDGEPSESARALNKLNTGNAEHPDQNILGNDNDLVDINIETAINFVDTGETYN 616

Query: 668  RNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVF 847
            R ++  +D+ F+Y+VA +I + + DPEP+S+ ECQ R DW KWK+AI+AELNSLNKRKVF
Sbjct: 617  R-DLIVVDDTFAYAVAHNIPHNNLDPEPKSITECQKRPDWLKWKEAIEAELNSLNKRKVF 675

Query: 848  GPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAI 1027
            GP VLTP+ V PVG KWVFVRKRNE NE+VRYKARLVAQGF+QRPGID+++TYSPV+D I
Sbjct: 676  GPTVLTPKDVIPVGSKWVFVRKRNENNEVVRYKARLVAQGFTQRPGIDFEQTYSPVIDGI 735

Query: 1028 TFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMP 1162
            +FRYLI LAV+  L+M+LMDVVTAYLYGSLD+DIYMKIPEG + P
Sbjct: 736  SFRYLISLAVNMKLDMQLMDVVTAYLYGSLDADIYMKIPEGIQNP 780


>dbj|BAF36296.1| hypothetical protein [Ipomoea trifida]
          Length = 1291

 Score =  466 bits (1199), Expect = e-150
 Identities = 236/405 (58%), Positives = 296/405 (73%), Gaps = 18/405 (4%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            +FGC VY PI P  RT MGPQR+LGIYVGYESPSII+YLEP TGD FTAR+ADC F+E  
Sbjct: 380  VFGCAVYTPIPPTNRTSMGPQRKLGIYVGYESPSIIKYLEPMTGDQFTARYADCIFDEDH 439

Query: 182  FPALGGEKKQLE---KEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTK 352
            FPALGG+K       +EI+W E  L +LDP T Q ELEVQKI++LQ +AN LPDAFTD +
Sbjct: 440  FPALGGDKSPYLTKCREISWDEKDLQYLDPRTSQTELEVQKIINLQNLANNLPDAFTDNR 499

Query: 353  RVTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDP 532
             VT+SHIPAVNAP+R+E+PKG   +  T   Q   KRGRP+G+KD NPRK +        
Sbjct: 500  GVTRSHIPAVNAPSRVEVPKGSGMHTDTPHRQ---KRGRPVGAKDLNPRKTRIGKISQSL 556

Query: 533  NMEECVPEETQDKTNQETLDVVNSPEGKE---------------NLEISIDYVNTGGLWN 667
                  PE+ +   +   L+ +N+   +                N+E +I++V+TG  +N
Sbjct: 557  PKNFSRPEDGEPSESARALNKLNTGNAEHPDQNILGNDNDLVDINIETAINFVDTGETYN 616

Query: 668  RNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVF 847
            R ++  +D+ F+Y+VA +I + + DPEP+S+ ECQ R DW KWK+AI+AELNSLNKRKVF
Sbjct: 617  R-DLIVVDDTFAYAVAHNIPHNNLDPEPKSITECQKRPDWLKWKEAIEAELNSLNKRKVF 675

Query: 848  GPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAI 1027
            GP VLTP+ V PVG KWVFVRKRNE NE+VRYKARLVAQGF+QRPGID+++TYSPV+D I
Sbjct: 676  GPTVLTPKDVIPVGSKWVFVRKRNENNEVVRYKARLVAQGFTQRPGIDFEQTYSPVIDGI 735

Query: 1028 TFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMP 1162
            +FRYLI LAV+  L+M+LMDVVTAYLYGSLD+DIYMKIPEG + P
Sbjct: 736  SFRYLISLAVNMKLDMQLMDVVTAYLYGSLDADIYMKIPEGIQNP 780


>gb|PRQ59184.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 797

 Score =  451 bits (1161), Expect = e-149
 Identities = 233/396 (58%), Positives = 287/396 (72%), Gaps = 19/396 (4%)
 Frame = +2

Query: 53   MGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAIFPALGGEKKQL----EK 220
            MGPQRR+GIYVGYESPSIIR+LEP TGD+FTARFADCHF+E +FP LGG+K        +
Sbjct: 1    MGPQRRMGIYVGYESPSIIRFLEPLTGDLFTARFADCHFDETVFPPLGGDKNVTVPDERR 60

Query: 221  EITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKRVTKSHIPAVNAPARI 400
            E+TW+ P++ HLDP T QC+ EV++I+ LQ +A  +PDAF+D  +VT+SHIPA N PARI
Sbjct: 61   ELTWNVPTMSHLDPRTAQCDNEVRRILDLQSVAQNMPDAFSDLAKVTRSHIPAANVPARI 120

Query: 401  EIP------KGKSENIVTNESQTRL-KRGRPIGSKDKNPRKR-KGANKHD-------DPN 535
            ++P       G+   +  N+S     KRGRP+GSKD  PRKR K A  +        DP+
Sbjct: 121  DVPVGRIVPDGRGTTMAANQSHVSAHKRGRPLGSKDSYPRKRVKPAQTNPLDIAISTDPS 180

Query: 536  MEECVPEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFSYSVA 715
              E +P+           D        EN EISI+Y     +WNRNE+  ID+ F ++VA
Sbjct: 181  -HEIIPDYGSVLEETTLGDAPTFEPTLENREISINYACLSEIWNRNEII-IDDIFVFAVA 238

Query: 716  CDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVGYK 895
             +I   S+D EPRSV ECQ R DW KWK+AIQ EL+SL KRKVFGP+V TP  V+PVG+K
Sbjct: 239  TEIIT-SDDVEPRSVDECQRRDDWPKWKEAIQVELDSLTKRKVFGPVVPTPRHVKPVGFK 297

Query: 896  WVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNLEM 1075
            WVFVRKRNE NEIVRYKARLVAQGFSQRPGIDYDETYSPVMD ITFRYLI LA+S+ L +
Sbjct: 298  WVFVRKRNEGNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDVITFRYLISLAISEKLNI 357

Query: 1076 RLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            +LMDVVTAYLYG LD++IYMK+PEG K+P+ +SS+P
Sbjct: 358  QLMDVVTAYLYGDLDTEIYMKVPEGLKIPDTNSSRP 393


>gb|AFP55536.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1508

 Score =  469 bits (1206), Expect = e-149
 Identities = 235/422 (55%), Positives = 304/422 (72%), Gaps = 28/422 (6%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAPPQRTKMGPQRRLG+YVGY+SP+IIRY+EP  GD+FTARFADCHF+E +
Sbjct: 668  IFGCAVYVPIAPPQRTKMGPQRRLGVYVGYDSPTIIRYIEPLIGDLFTARFADCHFDETV 727

Query: 182  FPALGGEK----KQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDT 349
            FP+LGG+K    +Q   E++WS P+L HLDP T Q E+EV++I+ LQ +A  +PDAF+D 
Sbjct: 728  FPSLGGDKNINVQQERPELSWSVPTLSHLDPRTAQSEIEVRRILDLQNVAESMPDAFSDI 787

Query: 350  KRVTKSHIPAVNAPARIEIPKGKSEN-------------------IVTNESQTRLKRGRP 472
             +VT+SHIPA N PARI++PK +  +                   ++   +    KRGRP
Sbjct: 788  AKVTRSHIPAANVPARIDVPKSRGHDANSRMHEHGANVPSLNDGDVMARPTAPARKRGRP 847

Query: 473  IGSKDKNPRKRKGANKHDDPNMEECVP--EETQDKTNQETLDVVNSPEGK---ENLEISI 637
            IGS+D  PRK+    +++   ++   P  E   D    +   + ++P  +   EN EISI
Sbjct: 848  IGSRDSRPRKKASLAQNNPLIIDINNPSHENIPDYGYVQETSLGDAPMSEPTPENREISI 907

Query: 638  DYVNTGGLWNRNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAE 817
            +Y +   + +RN M  ID+ F+Y +A  I    +D EPRSV ECQ R DW KWKDAIQ E
Sbjct: 908  NYTSVHEMMDRNSMA-IDDAFAYHIAKGIIE-YDDIEPRSVEECQRRADWPKWKDAIQVE 965

Query: 818  LNSLNKRKVFGPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYD 997
            L+SL KR+VFGP+  TP +V+PVG+KWVFVRKRNEKNE+VRYK+RLVAQGFSQRPGIDY+
Sbjct: 966  LDSLTKRQVFGPVTQTPPSVKPVGHKWVFVRKRNEKNEVVRYKSRLVAQGFSQRPGIDYE 1025

Query: 998  ETYSPVMDAITFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSS 1177
            ETYSPVMD ITFRYL+ L VS+ L+M+LMDVVT YLYG LDS+IYMK+P+G ++P++S S
Sbjct: 1026 ETYSPVMDVITFRYLVSLVVSEKLDMQLMDVVTTYLYGDLDSEIYMKVPDGLQLPKSSGS 1085

Query: 1178 KP 1183
            KP
Sbjct: 1086 KP 1087


>gb|PRQ16677.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1276

 Score =  459 bits (1181), Expect = e-147
 Identities = 239/415 (57%), Positives = 296/415 (71%), Gaps = 21/415 (5%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC +YVPI PPQRTKMGPQRR+ IYVGYESP+I+RYLEP TGD+FTARFADCHF+E +
Sbjct: 459  IFGCTIYVPITPPQRTKMGPQRRISIYVGYESPTIVRYLEPLTGDLFTARFADCHFDETV 518

Query: 182  FPALGGEK----KQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDT 349
            FP+LGG+K    +Q  +E++WS P++ HLDPHT Q ELEV++I+ LQ +A+ LPDAF+D 
Sbjct: 519  FPSLGGDKNTNVQQERQELSWSVPTMSHLDPHTAQSELEVRRIIELQNVADTLPDAFSDI 578

Query: 350  KRVTKSHIPAVNAPARIEIPKG----------------KSENIVTNESQTRLKRGRPIGS 481
             +VT+SHIPA N PARI++P                     N+ +       KRGRPIGS
Sbjct: 579  AKVTRSHIPAANVPARIDVPNNGHNATPLTLGDGTIAQHGNNVASMAVGPARKRGRPIGS 638

Query: 482  KDKNPRKRKGANKHDDPNMEECVPEETQDKTNQETLDVVNSPEGKENLEISI-DYVNTGG 658
            KD  PRKR    + +   ++      TQ+ +++      N P+     E S+ D     G
Sbjct: 639  KDTRPRKRANEAQINPLIID------TQNPSHE------NVPDYGYVQETSLGDASVVHG 686

Query: 659  LWNRNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKR 838
             W RN +  ID+ F+YSVA +I   ++D EPRSV ECQ R DW KWKDAIQAEL+SL KR
Sbjct: 687  TWERNSII-IDDVFAYSVAREIIE-TDDIEPRSVDECQRRADWPKWKDAIQAELDSLTKR 744

Query: 839  KVFGPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVM 1018
            KVFG IV  P   +PVG+KWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDY+ETYSPVM
Sbjct: 745  KVFGKIVPIPPNTKPVGHKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYEETYSPVM 804

Query: 1019 DAITFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            D ITFRYL+ L VS+ L M+LMDVVTAYLYG LD++IYM IP+G ++P++S S P
Sbjct: 805  DVITFRYLVSLVVSEKLNMQLMDVVTAYLYGDLDTEIYMNIPDGIQLPKSSGSNP 859


>emb|CAN71782.1| hypothetical protein VITISV_028677 [Vitis vinifera]
          Length = 1383

 Score =  445 bits (1144), Expect = e-141
 Identities = 238/412 (57%), Positives = 285/412 (69%), Gaps = 18/412 (4%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAP QRTK GPQRRL +YVG++SPSIIRYLEP T DVFTARFADCHFNE++
Sbjct: 647  IFGCAVYVPIAPTQRTKTGPQRRLEVYVGFDSPSIIRYLEPLTSDVFTARFADCHFNESV 706

Query: 182  FPALGGEKKQLE--KEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKR 355
            FP+LG EK   E  +EI W   ++ HLDP T QCELEVQ+I+HLQ + NQLPDAF D K+
Sbjct: 707  FPSLGKEKSIPEERREIIWKASTMTHLDPRTNQCELEVQRIIHLQNLTNQLPDAFIDIKK 766

Query: 356  VTKSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANK----H 523
            VTKSHIP  N  ARI++P G+    +TNES+ RLKRGRP+GSKD  PRKR+   K     
Sbjct: 767  VTKSHIPTANTSARIDVPVGQ----LTNESKIRLKRGRPVGSKDVTPRKRRTQEKLGTLE 822

Query: 524  DDPNMEECVP-------EETQ--DKTNQETLDVVNSPEGK---ENLEISIDYVNTGGLWN 667
            D   M + V        EE Q   KT +E      +PE     EN EIS+ YV TG  W+
Sbjct: 823  DTIKMTDQVKIDKSIALEEAQIMQKTLEEAHIEQEAPEEAQVPENCEISVSYVQTGEKWD 882

Query: 668  RNEMEDIDEKFSYSVACDIANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVF 847
            RN +  I+  F++ V  DI    EDPEPR+V E Q                         
Sbjct: 883  RNNIV-INNIFAFQVTSDIIRNDEDPEPRNVEEFQ------------------------- 916

Query: 848  GPIVLTPEAVRPVGYKWVFVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAI 1027
                 TPE V+PVGYKWVFVRKRNE N+I+RYKARLV QGFSQRPGIDY+ETYSPVM+AI
Sbjct: 917  -----TPEDVKPVGYKWVFVRKRNENNKIIRYKARLVVQGFSQRPGIDYEETYSPVMNAI 971

Query: 1028 TFRYLIHLAVSKNLEMRLMDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSKP 1183
            TFR+LI LAVS+ L++RLMDV+T YLYGS+D+DIYMKIPEGFK+P+A+++KP
Sbjct: 972  TFRFLISLAVSEGLDIRLMDVITTYLYGSMDNDIYMKIPEGFKLPDANNTKP 1023


>gb|KYP77193.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
            [Cajanus cajan]
          Length = 588

 Score =  419 bits (1076), Expect = e-139
 Identities = 221/393 (56%), Positives = 266/393 (67%)
 Frame = +2

Query: 2    IFGCEVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIRYLEPQTGDVFTARFADCHFNEAI 181
            IFGC VYVPIAPPQRTKMGPQRRLGIYVGYESPSII+YLEP TGD+FTARFADCHFNE I
Sbjct: 150  IFGCAVYVPIAPPQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELI 209

Query: 182  FPALGGEKKQLEKEITWSEPSLLHLDPHTKQCELEVQKIMHLQEIANQLPDAFTDTKRVT 361
            FP LGGE+                     KQ E ++                        
Sbjct: 210  FPTLGGEQ---------------------KQLEKDI------------------------ 224

Query: 362  KSHIPAVNAPARIEIPKGKSENIVTNESQTRLKRGRPIGSKDKNPRKRKGANKHDDPNME 541
                          IP G+     TNESQ RLKRGRPIGSKDKNPR +KGA + +D   +
Sbjct: 225  --------------IPVGQFNT--TNESQIRLKRGRPIGSKDKNPRIKKGAKEQNDQIED 268

Query: 542  ECVPEETQDKTNQETLDVVNSPEGKENLEISIDYVNTGGLWNRNEMEDIDEKFSYSVACD 721
                +++ D T+    +    PE  EN EISI+YV  G  WNRN + +ID+ F+Y++A +
Sbjct: 269  VKTQKDSSDITHIPVPEETQVPEIIENEEISINYVMNGIRWNRNNV-NIDDVFAYNIALN 327

Query: 722  IANGSEDPEPRSVAECQNRQDWDKWKDAIQAELNSLNKRKVFGPIVLTPEAVRPVGYKWV 901
              N  ED EP+S+ +C+ R DW KWKDAI+AEL+SL KRKVFGP++ TP+ V+P+GYKWV
Sbjct: 328  EINDIEDQEPKSINDCRQRNDWPKWKDAIEAELDSLAKRKVFGPVLRTPKGVKPIGYKWV 387

Query: 902  FVRKRNEKNEIVRYKARLVAQGFSQRPGIDYDETYSPVMDAITFRYLIHLAVSKNLEMRL 1081
            FVRKRNE  EIVRYKARLVAQGFSQRPGID++ETYSPV+DA TFRYLI L V + L + L
Sbjct: 388  FVRKRNENGEIVRYKARLVAQGFSQRPGIDFEETYSPVVDANTFRYLISLVVHEKLNLHL 447

Query: 1082 MDVVTAYLYGSLDSDIYMKIPEGFKMPEASSSK 1180
            MDVVTAYLYGSLD+DIYMK+PEGF +P+ + S+
Sbjct: 448  MDVVTAYLYGSLDADIYMKLPEGFNLPDDAISR 480