BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00014013
         (655 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagu...   265   5e-78
ref|XP_020258675.1| protein RNA-directed DNA methylation 3, part...   263   1e-77
ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylat...   177   2e-47
ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylat...   177   2e-47
ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylat...   176   4e-47
ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylat...   176   4e-47
ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylat...   176   6e-47
gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     152   9e-39
gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]     152   9e-39
ref|XP_020587140.1| protein RNA-directed DNA methylation 3 [Phal...   151   2e-38
ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Seta...   150   4e-38
ref|XP_020682212.1| protein RNA-directed DNA methylation 3 [Dend...   150   6e-38
gb|AQK94727.1| Protein RNA-directed DNA methylation 3 [Zea mays]      148   8e-38
gb|AQK94723.1| Protein RNA-directed DNA methylation 3, partial [...   148   9e-38
gb|AQK87063.1| Protein RNA-directed DNA methylation 3 [Zea mays]      147   1e-37
ref|XP_020091607.1| protein RNA-directed DNA methylation 3 isofo...   148   2e-37
gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas co...   148   2e-37
ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isofo...   148   2e-37
ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isofo...   148   2e-37
ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isofo...   148   2e-37

>gb|ONK75729.1| uncharacterized protein A4U43_C03F19930 [Asparagus officinalis]
          Length = 1710

 Score =  265 bits (676), Expect = 5e-78
 Identities = 146/217 (67%), Positives = 162/217 (74%), Gaps = 1/217 (0%)
 Frame = -3

Query: 653  SFRKGGNKSSSSFNQSPVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCR 474
            SF KG NK+SSSF+Q PV S EQEDSS + RNRR ESNQ FS+GQTLRIRKGPLKGYLCR
Sbjct: 476  SFGKG-NKASSSFSQDPVISSEQEDSSFS-RNRRRESNQIFSVGQTLRIRKGPLKGYLCR 533

Query: 473  VVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGE 294
            VVRIYRSDVTVKLDSLVKVITV+EQ LS PN+KR+ A               GGLSGNGE
Sbjct: 534  VVRIYRSDVTVKLDSLVKVITVDEQLLSDPNLKRDTAG--------------GGLSGNGE 579

Query: 293  QTVGAGLWDGASSSWQVLSTSTL-FANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPW 117
            QT+GA  WDG SSSWQ LSTS   F+ NN QK  QEQGADPW  +VS  AGD + ++DPW
Sbjct: 580  QTLGASSWDGGSSSWQDLSTSAFSFSANNDQKSGQEQGADPWAGRVSHVAGDQE-QSDPW 638

Query: 116  GSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGS 6
             SK+S+ AGD G +DPWGSK   AARD    ADPWGS
Sbjct: 639  VSKASITAGDGGSADPWGSKASLAARDDGGSADPWGS 675



 Score = 78.6 bits (192), Expect = 4e-13
 Identities = 36/60 (60%), Positives = 43/60 (71%)
 Frame = -3

Query: 182 ADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSN 3
           ADP G+K SLAAGD    ADPWGSK +    D G +DPWG+KL P AR+ +QG DPWGS+
Sbjct: 721 ADPSGNKASLAAGDGG-SADPWGSKQTPGTRDGGSADPWGTKLTPGAREQEQGVDPWGSS 779



 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 42/96 (43%), Positives = 51/96 (53%)
 Frame = -3

Query: 293  QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWG 114
            +T G G        W   ST T+ +   +   +Q +GA  W S  S    D    ADPWG
Sbjct: 1386 KTTGGGGSGKDGDGWNKSSTKTISSTLGMISPDQGEGAATWASGSSR---DKTQGADPWG 1442

Query: 113  SKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGS 6
            SK+S AA D G +DPWG KL  +ARD  QGAD WGS
Sbjct: 1443 SKASPAAKDKGEADPWGGKLAASARDPGQGADAWGS 1478



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 43/98 (43%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
 Frame = -3

Query: 293  QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWG 114
            +T G G  +     W   S S+ F+        +E+GAD W SKV  AA DH    D WG
Sbjct: 831  KTEGVGC-EKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAKDHARGVDAWG 882

Query: 113  SKSSVAAGDLGGSDPWGSKLVPAAR-DHKQGADPWGSN 3
            SK+SVA  D GG DPW SK+    R +  QG DPW SN
Sbjct: 883  SKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSN 920



 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 38/66 (57%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
 Frame = -3

Query: 197  EQEQGADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLG-GSDPWGSK-LVPAARDHKQG 24
            ++ QGADPWGSK S AA D K EADPWG K + +A D G G+D WGSK   P+  D +Q 
Sbjct: 1433 DKTQGADPWGSKASPAAKD-KGEADPWGGKLAASARDPGQGADAWGSKAAAPSRADKEQK 1491

Query: 23   ADPWGS 6
            AD WGS
Sbjct: 1492 ADAWGS 1497


>ref|XP_020258675.1| protein RNA-directed DNA methylation 3, partial [Asparagus
            officinalis]
          Length = 1734

 Score =  263 bits (673), Expect = 1e-77
 Identities = 149/219 (68%), Positives = 163/219 (74%), Gaps = 3/219 (1%)
 Frame = -3

Query: 653  SFRKGGNKSSSSFNQSPVRSCEQEDSSHTF-RNRRSESNQPFSIGQTLRIRKGPLKGYLC 477
            SF KG NK+SSSF+Q PV S EQEDSS TF RNRR ESNQ FS+GQTLRIRKGPLKGYLC
Sbjct: 495  SFGKG-NKASSSFSQDPVISSEQEDSSCTFSRNRRRESNQIFSVGQTLRIRKGPLKGYLC 553

Query: 476  RVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNG 297
            RVVRIYRSDVTVKLDSLVKVITV+EQ LS PN+KR+ A               GGLSGNG
Sbjct: 554  RVVRIYRSDVTVKLDSLVKVITVDEQLLSDPNLKRDTAG--------------GGLSGNG 599

Query: 296  EQTVGAGLWDGASSSWQVLSTSTL-FANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADP 120
            EQT+GA  WDG SSSWQ LSTS   F+ NN QK  QEQGADPW  +VS  AGD + ++DP
Sbjct: 600  EQTLGASSWDGGSSSWQDLSTSAFSFSANNDQKSGQEQGADPWAGRVSHVAGDQE-QSDP 658

Query: 119  WGSKSSVAAGDLGGS-DPWGSKLVPAARDHKQGADPWGS 6
            W SK+S+ AG  GGS DPWGSK   AARD    ADPWGS
Sbjct: 659  WVSKASITAGADGGSADPWGSKASLAARDDGGSADPWGS 697



 Score = 79.0 bits (193), Expect = 3e-13
 Identities = 47/121 (38%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
 Frame = -3

Query: 350  SDIFGTQERLLGGLSGNGEQ-----TVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQ 186
            +D +G++  L  G  G+ +      ++ AG    ++  W   S ++L A           
Sbjct: 692  ADPWGSKASLPAGDGGSADPWGSKTSLAAGAEGSSADPWG--SKASLAAREG-------G 742

Query: 185  GADPWGSKVSLAAGDHKPEADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGS 6
             ADP G+K SLAAGD    ADPWGSK +    D G +DPWG+KL P AR+ +QG DPWGS
Sbjct: 743  SADPSGNKASLAAGDGG-SADPWGSKQTPGTRDGGSADPWGTKLTPGAREQEQGVDPWGS 801

Query: 5    N 3
            +
Sbjct: 802  S 802



 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 43/98 (43%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
 Frame = -3

Query: 293  QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWG 114
            +T G G  +     W   S S+ F+        +E+GAD W SKV  AA DH    D WG
Sbjct: 854  KTEGVGC-EKDGDGWNKPSASSSFSG-------RERGADQWESKVPAAAKDHARGVDAWG 905

Query: 113  SKSSVAAGDLGGSDPWGSKLVPAAR-DHKQGADPWGSN 3
            SK+SVA  D GG DPW SK+    R +  QG DPW SN
Sbjct: 906  SKASVANKDQGGEDPWASKVTAGVRAEQGQGTDPWVSN 943



 Score = 71.6 bits (174), Expect = 9e-11
 Identities = 42/97 (43%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -3

Query: 293  QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWG 114
            +T G G        W   ST T+ +   +   +Q +GA  W S  S    D    ADPWG
Sbjct: 1409 KTTGGGGSGKDGDGWNKSSTKTISSTLGMISPDQGEGAATWASGSSR---DKTQGADPWG 1465

Query: 113  SKSSVAAGDLGGSDPWGSKLVPAAR-DHKQGADPWGS 6
            SK+S AA D G +DPWG KL  +AR D  QGAD WGS
Sbjct: 1466 SKASPAAKDKGEADPWGGKLAASARADPGQGADAWGS 1502


>ref|XP_010933206.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X3 [Elaeis
            guineensis]
          Length = 2067

 Score =  177 bits (448), Expect = 2e-47
 Identities = 113/227 (49%), Positives = 140/227 (61%), Gaps = 18/227 (7%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +
Sbjct: 531  GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGV 590

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGEQTVG 282
            YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FGTQE    GLS  G Q V 
Sbjct: 591  YRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFGTQE----GLSIAG-QHVD 645

Query: 281  AGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADP 120
             G WD +       SWQ    +++   +NN  K ++   ADPWGSKV   A      AD 
Sbjct: 646  NGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADA 700

Query: 119  WGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQGADPW 12
            W S  ++     AAG  G  D  W     G K+   AR+  + AD W
Sbjct: 701  WHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGW 747


>ref|XP_010933194.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X1 [Elaeis
            guineensis]
          Length = 2069

 Score =  177 bits (448), Expect = 2e-47
 Identities = 113/227 (49%), Positives = 140/227 (61%), Gaps = 18/227 (7%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +
Sbjct: 533  GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGV 592

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGEQTVG 282
            YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FGTQE    GLS  G Q V 
Sbjct: 593  YRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFGTQE----GLSIAG-QHVD 647

Query: 281  AGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADP 120
             G WD +       SWQ    +++   +NN  K ++   ADPWGSKV   A      AD 
Sbjct: 648  NGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADA 702

Query: 119  WGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQGADPW 12
            W S  ++     AAG  G  D  W     G K+   AR+  + AD W
Sbjct: 703  WHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGW 749


>ref|XP_010933212.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X4 [Elaeis
            guineensis]
          Length = 2066

 Score =  176 bits (446), Expect = 4e-47
 Identities = 111/227 (48%), Positives = 138/227 (60%), Gaps = 18/227 (7%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +
Sbjct: 531  GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGV 590

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGEQTVG 282
            YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FGTQE L  G      Q V 
Sbjct: 591  YRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFGTQEGLSIG------QHVD 644

Query: 281  AGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADP 120
             G WD +       SWQ    +++   +NN  K ++   ADPWGSKV   A      AD 
Sbjct: 645  NGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADA 699

Query: 119  WGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQGADPW 12
            W S  ++     AAG  G  D  W     G K+   AR+  + AD W
Sbjct: 700  WHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGW 746


>ref|XP_010933199.1| PREDICTED: protein RNA-directed DNA methylation 3 isoform X2 [Elaeis
            guineensis]
          Length = 2068

 Score =  176 bits (446), Expect = 4e-47
 Identities = 111/227 (48%), Positives = 138/227 (60%), Gaps = 18/227 (7%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSHTFR-NRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G KSS SF Q P+RS E++D SH F  +R+S+ +Q FSIGQTLRIRKGPLKGYLCRVV +
Sbjct: 533  GEKSSHSFFQPPMRSSEEQDRSHGFNWHRQSDRDQIFSIGQTLRIRKGPLKGYLCRVVGV 592

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGEQTVG 282
            YRSDVTVKLDSLVKVITVE ++LS+PN+KR+ +A   S+ FGTQE L  G      Q V 
Sbjct: 593  YRSDVTVKLDSLVKVITVEAEYLSVPNVKRDDSAATTSNTFGTQEGLSIG------QHVD 646

Query: 281  AGLWDGA-----SSSWQVL-STSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADP 120
             G WD +       SWQ    +++   +NN  K ++   ADPWGSKV   A      AD 
Sbjct: 647  NGQWDASVPSFGRGSWQAFPGSNSSDVDNNDHKSDEGHDADPWGSKVLSGA-----RADA 701

Query: 119  WGSKSSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQGADPW 12
            W S  ++     AAG  G  D  W     G K+   AR+  + AD W
Sbjct: 702  WHSSKAMDGWGKAAGSSGEQDSQWNMTAAGDKVTDQARNCIEDADGW 748


>ref|XP_008794002.1| PREDICTED: protein RNA-directed DNA methylation 3 [Phoenix
            dactylifera]
          Length = 2039

 Score =  176 bits (445), Expect = 6e-47
 Identities = 109/223 (48%), Positives = 138/223 (61%), Gaps = 14/223 (6%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSHTFRNRR-SESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G KSS SF+Q+P+ S E++D SH F  RR +E +Q FSIGQTLRIRKGPLKGYLCRVV +
Sbjct: 529  GEKSSHSFSQAPMGSYEEQDRSHGFNWRRQTERDQVFSIGQTLRIRKGPLKGYLCRVVGV 588

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERL-LGGLSGNGEQTV 285
            YRSDVTVK+DSLVK+ITVE ++LS+PN+KR+ +A   S+ FGTQERL +G  + NG+  V
Sbjct: 589  YRSDVTVKVDSLVKIITVEAEYLSVPNVKRDDSAATTSNPFGTQERLSIGQHAENGQWDV 648

Query: 284  GAGLWDGASSSWQVLSTSTLF-ANNNVQKIEQEQGADPWGSKVSLAAGDHKPEADPWGSK 108
            G   +     SWQ    S     +NN  K ++   ADPWGSKV   A      AD W S 
Sbjct: 649  GVPSF--GRDSWQAFPASNFSDVDNNGHKADEGHDADPWGSKVISGA-----RADAWHSS 701

Query: 107  SSV-----AAGDLGGSD-PW-----GSKLVPAARDHKQGADPW 12
             ++     AA   G  D  W     G K+   AR+  + AD W
Sbjct: 702  KAMDGWGKAASSSGEQDSQWNMTAAGEKVTDQARNCIEDADGW 744


>gb|PAN18741.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1664

 Score =  152 bits (384), Expect = 9e-39
 Identities = 100/222 (45%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
 Frame = -3

Query: 641  GGNKSSSSFNQSPV---RSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRV 471
            GG+ + +  N  P+    S EQ +   T R  RS   Q FSIGQ LRIRKGPLKGYLCRV
Sbjct: 555  GGSTTENLDNPFPMFAEPSYEQNEHRGTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRV 614

Query: 470  VRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGEQ 291
            VRI+R+DVTVKLDSL+K++TV+ +FLS+P  + +  +  P+  FG+Q+    G S   + 
Sbjct: 615  VRIFRNDVTVKLDSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQDTSFFG-SEAEKT 673

Query: 290  TVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP------- 132
            +   GL    S SWQ  S+STL     VQ    E   DPW SK S A G+  P       
Sbjct: 674  SWDNGLPSFGSDSWQPFSSSTL----PVQNTGGESENDPW-SKKSSAEGESDPWGKKTDG 728

Query: 131  EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGS 6
            + DPWG+K  VA    G SDPWG+K+ P+A      +DPWG+
Sbjct: 729  DPDPWGNK--VAHSADGDSDPWGNKVAPSA---DGDSDPWGN 765


>gb|PAN18742.1| hypothetical protein PAHAL_C02415 [Panicum hallii]
          Length = 1679

 Score =  152 bits (384), Expect = 9e-39
 Identities = 100/222 (45%), Positives = 130/222 (58%), Gaps = 10/222 (4%)
 Frame = -3

Query: 641  GGNKSSSSFNQSPV---RSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRV 471
            GG+ + +  N  P+    S EQ +   T R  RS   Q FSIGQ LRIRKGPLKGYLCRV
Sbjct: 555  GGSTTENLDNPFPMFAEPSYEQNEHRGTERPYRSTREQLFSIGQMLRIRKGPLKGYLCRV 614

Query: 470  VRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGEQ 291
            VRI+R+DVTVKLDSL+K++TV+ +FLS+P  + +  +  P+  FG+Q+    G S   + 
Sbjct: 615  VRIFRNDVTVKLDSLLKIVTVQAEFLSVPANRGDNLSGAPAGNFGSQDTSFFG-SEAEKT 673

Query: 290  TVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP------- 132
            +   GL    S SWQ  S+STL     VQ    E   DPW SK S A G+  P       
Sbjct: 674  SWDNGLPSFGSDSWQPFSSSTL----PVQNTGGESENDPW-SKKSSAEGESDPWGKKTDG 728

Query: 131  EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGS 6
            + DPWG+K  VA    G SDPWG+K+ P+A      +DPWG+
Sbjct: 729  DPDPWGNK--VAHSADGDSDPWGNKVAPSA---DGDSDPWGN 765


>ref|XP_020587140.1| protein RNA-directed DNA methylation 3 [Phalaenopsis equestris]
          Length = 1960

 Score =  151 bits (382), Expect = 2e-38
 Identities = 100/219 (45%), Positives = 130/219 (59%), Gaps = 9/219 (4%)
 Frame = -3

Query: 641  GGNKSSS----SFNQSPVRSCEQEDSSHTF-RNRRSESNQPFSIGQTLRIRKGPLKGYLC 477
            GG K SS    SF QSP+RS EQ+D+S +F RN +S S   FS+GQTLRI KGPLKGYLC
Sbjct: 559  GGGKLSSNAGPSFAQSPIRSSEQDDNSQSFSRNHQSNSRGTFSVGQTLRICKGPLKGYLC 618

Query: 476  RVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQ-ERLLGGLSGN 300
            RV+RIYR+DVTVKLDSL K++TV+E+ LS PN KR+ A  M  D+FG+Q E+ +GGL  +
Sbjct: 619  RVIRIYRADVTVKLDSLGKLLTVDEKLLSFPNSKRDDATTMQCDMFGSQEEQPIGGLLDS 678

Query: 299  GEQTVGAGLWDGAS---SSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPE 129
            G    G G+ D +S    SW   S S    + +    +Q   AD WGSK +   GD    
Sbjct: 679  GG---GFGM-DNSSFGRESWNTPSCSGFSFSRDNDCKDQSAVADQWGSKPTFQDGDQDHG 734

Query: 128  ADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPW 12
            A    SK+  ++ +    +   S    A  D +  AD W
Sbjct: 735  AANSWSKAPSSSAEQRSWNKMVSGEKGADADCENDADAW 773


>ref|XP_004961584.1| protein RNA-directed DNA methylation 3 [Setaria italica]
          Length = 1702

 Score =  150 bits (379), Expect = 4e-38
 Identities = 101/223 (45%), Positives = 133/223 (59%), Gaps = 10/223 (4%)
 Frame = -3

Query: 647  RKGGNKSSSSFNQSPVRSCEQEDSSH--TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCR 474
            RK  + + +  N  P+ S   E + H  T R  RS   Q FSIGQ LRIRKGPLKGYLCR
Sbjct: 558  RKESSTTENLDNPIPMFSEPYEQNEHRDTERPYRSTREQLFSIGQMLRIRKGPLKGYLCR 617

Query: 473  VVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSGNGE 294
            VV+I+R+DVTVKLDSL+K++TV+ +FLS+P  + + ++  P+  FG+Q+    G S   +
Sbjct: 618  VVKIFRNDVTVKLDSLLKIVTVQAEFLSVPANRGDNSSGAPAGNFGSQDTSFFG-SEADK 676

Query: 293  QTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP------ 132
             +   GL    S SWQ  S+STL A N       E  +DPW  K S A G+  P      
Sbjct: 677  ASWDNGLPSFGSDSWQPFSSSTLPAQN----AGGESESDPW-CKKSSAGGESDPWGKKTD 731

Query: 131  -EADPWGSKSSVAAGDLGGSDPWGSKLV-PAARDHKQGADPWG 9
             ++DPWG+K  V +GD G SDPWG K+V PA  D    +DPWG
Sbjct: 732  SDSDPWGNK-VVPSGD-GDSDPWGKKVVAPADGD----SDPWG 768


>ref|XP_020682212.1| protein RNA-directed DNA methylation 3 [Dendrobium catenatum]
 gb|PKU72137.1| Putative transcription elongation factor SPT5 like 1 [Dendrobium
            catenatum]
          Length = 1946

 Score =  150 bits (378), Expect = 6e-38
 Identities = 93/196 (47%), Positives = 120/196 (61%), Gaps = 13/196 (6%)
 Frame = -3

Query: 641  GGNKSSS----SFNQSPVRSCEQEDSSHTF-RNRRSESNQPFSIGQTLRIRKGPLKGYLC 477
            GG K S+    SF QSP+R  EQ+D+S +F RN++S S   FS+GQTLRIRKGPLKGYLC
Sbjct: 558  GGGKLSTRAGPSFAQSPIRLSEQDDNSQSFSRNQQSNSLGTFSVGQTLRIRKGPLKGYLC 617

Query: 476  RVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERL-------L 318
            RV+R+ R+D+TVKLDSL K++TV+E+ LS+PN KR+ A  M  ++FG+QE          
Sbjct: 618  RVIRMRRADITVKLDSLGKLLTVDEKLLSLPNSKRDDATAMQCNMFGSQEDQSTDGLLDA 677

Query: 317  GGLSGNGEQTVGAGLWDGASSSWQVLSTSTL-FANNNVQKIEQEQGADPWGSKVSLAAGD 141
            GG  G       AG+      SW   S S+  F   N  K +Q Q ADPWGSK+S   GD
Sbjct: 678  GGGLGMDNFEFNAGMSSFGRDSWNTASCSSFSFPRENDSK-DQNQIADPWGSKLSSWNGD 736

Query: 140  HKPEADPWGSKSSVAA 93
             +      G   SV+A
Sbjct: 737  QEQGPANKGEAPSVSA 752


>gb|AQK94727.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 607

 Score =  148 bits (373), Expect = 8e-38
 Identities = 103/236 (43%), Positives = 129/236 (54%), Gaps = 23/236 (9%)
 Frame = -3

Query: 647 RKGGNKS---SSSFNQS--PVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGY 483
           RKG   S   SS F     P  + EQ     T R  RS   Q FSIGQ LRIRKGPLKGY
Sbjct: 45  RKGLGSSTTESSDFTTPMFPEPAYEQNGHRDTERPYRSTREQLFSIGQMLRIRKGPLKGY 104

Query: 482 LCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSG 303
           LCRVVRI+R+DVTVKLDSL+K++TV+   LS+P  + +  +  P+  FG+Q+    G S 
Sbjct: 105 LCRVVRIFRNDVTVKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SE 163

Query: 302 NGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP--- 132
            G+ +   GL    S SWQ  S+STL    +VQ    E  ADPW  K S A  D  P   
Sbjct: 164 AGKTSWDNGLPSFGSDSWQPFSSSTL----SVQNAGGESEADPWSKKTS-AKDDSDPWGK 218

Query: 131 ---------------EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWG 9
                          ++DPWG K +V+A D G S+PWG + VP+A      +DPWG
Sbjct: 219 KTDGDSDRWGKKTDGDSDPWG-KEAVSAAD-GDSNPWGKETVPSAAG---DSDPWG 269


>gb|AQK94723.1| Protein RNA-directed DNA methylation 3, partial [Zea mays]
          Length = 624

 Score =  148 bits (373), Expect = 9e-38
 Identities = 103/236 (43%), Positives = 129/236 (54%), Gaps = 23/236 (9%)
 Frame = -3

Query: 647 RKGGNKS---SSSFNQS--PVRSCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGY 483
           RKG   S   SS F     P  + EQ     T R  RS   Q FSIGQ LRIRKGPLKGY
Sbjct: 65  RKGLGSSTTESSDFTTPMFPEPAYEQNGHRDTERPYRSTREQLFSIGQMLRIRKGPLKGY 124

Query: 482 LCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSG 303
           LCRVVRI+R+DVTVKLDSL+K++TV+   LS+P  + +  +  P+  FG+Q+    G S 
Sbjct: 125 LCRVVRIFRNDVTVKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTSFFG-SE 183

Query: 302 NGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP--- 132
            G+ +   GL    S SWQ  S+STL    +VQ    E  ADPW  K S A  D  P   
Sbjct: 184 AGKTSWDNGLPSFGSDSWQPFSSSTL----SVQNAGGESEADPWSKKTS-AKDDSDPWGK 238

Query: 131 ---------------EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWG 9
                          ++DPWG K +V+A D G S+PWG + VP+A      +DPWG
Sbjct: 239 KTDGDSDRWGKKTDGDSDPWG-KEAVSAAD-GDSNPWGKETVPSAAG---DSDPWG 289


>gb|AQK87063.1| Protein RNA-directed DNA methylation 3 [Zea mays]
          Length = 587

 Score =  147 bits (371), Expect = 1e-37
 Identities = 98/225 (43%), Positives = 128/225 (56%), Gaps = 12/225 (5%)
 Frame = -3

Query: 647 RKGGNKSSSSFNQSPVR-----SCEQEDSSHTFRNRRSESNQPFSIGQTLRIRKGPLKGY 483
           RKG   S++  +  P       + EQ +  +T    RS   Q FSIGQ LRIRKGPLKGY
Sbjct: 65  RKGLGSSTTENSDFPTPMFSEPAYEQNEHRNTEGPYRSTREQLFSIGQMLRIRKGPLKGY 124

Query: 482 LCRVVRIYRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQERLLGGLSG 303
           LCRVVRI+R+DVTVKLDSL+K++TV+   LS+P  + +  +  P+  FG+Q+    G S 
Sbjct: 125 LCRVVRIFRNDVTVKLDSLLKIVTVQADLLSVPANRGDNLSGAPASKFGSQDTPFFG-SE 183

Query: 302 NGEQTVGAGLWDGASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKP--- 132
            G+ +   GL    S SWQ  S+STL     VQ    E  ADPW  K S A  D  P   
Sbjct: 184 AGKTSWDRGLPSFGSDSWQPFSSSTL----PVQNAGAESEADPWCKKTS-AEDDSDPWGK 238

Query: 131 ----EADPWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWG 9
               ++DPWG K +V+A D G  +PWG + VP+A      +DPWG
Sbjct: 239 KTDGDSDPWG-KEAVSAAD-GDCNPWGKETVPSAAG---DSDPWG 278


>ref|XP_020091607.1| protein RNA-directed DNA methylation 3 isoform X5 [Ananas comosus]
          Length = 1429

 Score =  148 bits (374), Expect = 2e-37
 Identities = 98/220 (44%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
 Frame = -3

Query: 638 GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
           G+ S+S F++ P  S E +DSS    R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI
Sbjct: 253 GDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRI 312

Query: 461 YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQER-LLGGLSGNG-EQT 288
           +RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    SD+FGTQE   +G  S +G E  
Sbjct: 313 FRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQ 372

Query: 287 VGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEAD 123
            G   WD       S  WQ  S S L A  N     +    DPWGSKV          AD
Sbjct: 373 PGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NKTDDVDPWGSKVK-----SDQSAD 425

Query: 122 PWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSN 3
            W + ++  +GD   S  W      AA      AD W +N
Sbjct: 426 TW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTWQNN 459


>gb|OAY66311.1| Protein RNA-directed DNA methylation 3 [Ananas comosus]
          Length = 1701

 Score =  148 bits (374), Expect = 2e-37
 Identities = 98/220 (44%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G+ S+S F++ P  S E +DSS    R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI
Sbjct: 535  GDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRI 594

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQER-LLGGLSGNG-EQT 288
            +RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    SD+FGTQE   +G  S +G E  
Sbjct: 595  FRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQ 654

Query: 287  VGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEAD 123
             G   WD       S  WQ  S S L A  N     +    DPWGSKV          AD
Sbjct: 655  PGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NKTDDVDPWGSKVK-----SDQSAD 707

Query: 122  PWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSN 3
             W + ++  +GD   S  W      AA      AD W +N
Sbjct: 708  TW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTWQNN 741


>ref|XP_020091606.1| protein RNA-directed DNA methylation 3 isoform X4 [Ananas comosus]
          Length = 1705

 Score =  148 bits (374), Expect = 2e-37
 Identities = 98/220 (44%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G+ S+S F++ P  S E +DSS    R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI
Sbjct: 539  GDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRI 598

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQER-LLGGLSGNG-EQT 288
            +RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    SD+FGTQE   +G  S +G E  
Sbjct: 599  FRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQ 658

Query: 287  VGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEAD 123
             G   WD       S  WQ  S S L A  N     +    DPWGSKV          AD
Sbjct: 659  PGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NKTDDVDPWGSKVK-----SDQSAD 711

Query: 122  PWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSN 3
             W + ++  +GD   S  W      AA      AD W +N
Sbjct: 712  TW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTWQNN 745


>ref|XP_020091604.1| protein RNA-directed DNA methylation 3 isoform X2 [Ananas comosus]
          Length = 1714

 Score =  148 bits (374), Expect = 2e-37
 Identities = 98/220 (44%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G+ S+S F++ P  S E +DSS    R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI
Sbjct: 539  GDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRI 598

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQER-LLGGLSGNG-EQT 288
            +RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    SD+FGTQE   +G  S +G E  
Sbjct: 599  FRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQ 658

Query: 287  VGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEAD 123
             G   WD       S  WQ  S S L A  N     +    DPWGSKV          AD
Sbjct: 659  PGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NKTDDVDPWGSKVK-----SDQSAD 711

Query: 122  PWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSN 3
             W + ++  +GD   S  W      AA      AD W +N
Sbjct: 712  TW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTWQNN 745


>ref|XP_020091605.1| protein RNA-directed DNA methylation 3 isoform X3 [Ananas comosus]
          Length = 1714

 Score =  148 bits (374), Expect = 2e-37
 Identities = 98/220 (44%), Positives = 123/220 (55%), Gaps = 8/220 (3%)
 Frame = -3

Query: 638  GNKSSSSFNQSPVRSCEQEDSSH-TFRNRRSESNQPFSIGQTLRIRKGPLKGYLCRVVRI 462
            G+ S+S F++ P  S E +DSS    R R+ + +  FSIGQTLRI KGPLKGYLCRVVRI
Sbjct: 538  GDGSASLFSEPPTISFENQDSSSGAGRRRQYDRDSLFSIGQTLRICKGPLKGYLCRVVRI 597

Query: 461  YRSDVTVKLDSLVKVITVEEQFLSIPNIKREFAAEMPSDIFGTQER-LLGGLSGNG-EQT 288
            +RS+VTVKLDSLVK+ITV+ +FLS+P  KR+ +    SD+FGTQE   +G  S +G E  
Sbjct: 598  FRSEVTVKLDSLVKIITVDAKFLSVPTRKRDDSTGAASDLFGTQEMPSIGPFSADGTESQ 657

Query: 287  VGAGLWDG-----ASSSWQVLSTSTLFANNNVQKIEQEQGADPWGSKVSLAAGDHKPEAD 123
             G   WD       S  WQ  S S L A  N     +    DPWGSKV          AD
Sbjct: 658  PGRSSWDSPLPSFGSDGWQPFSASKLSAAGNTD--NKTDDVDPWGSKVK-----SDQSAD 710

Query: 122  PWGSKSSVAAGDLGGSDPWGSKLVPAARDHKQGADPWGSN 3
             W + ++  +GD   S  W      AA      AD W +N
Sbjct: 711  TW-ANAAAPSGDQNSS--WDKSTTNAASGQ---ADTWQNN 744