BLASTX nr result
ID: Ophiopogon24_contig00008251
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00008251
(717 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 154 4e-50
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 154 6e-50
gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinen... 151 1e-46
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 148 3e-46
gb|KYP57718.1| Retrovirus-related Pol polyprotein from transposo... 145 2e-45
gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium bar... 137 5e-45
dbj|GAU51472.1| hypothetical protein TSUD_95870 [Trifolium subte... 141 2e-44
gb|KYP68590.1| Retrovirus-related Pol polyprotein from transposo... 133 2e-44
gb|KYP69326.1| Retrovirus-related Pol polyprotein from transposo... 133 2e-44
pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis t... 145 4e-44
gb|PNX85388.1| retrovirus-related Pol polyprotein from transposo... 129 4e-44
gb|KOM47916.1| hypothetical protein LR48_Vigan07g162000 [Vigna a... 133 4e-44
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 142 6e-44
emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana] 144 8e-44
gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposo... 132 8e-44
gb|PNX61902.1| retrovirus-related Pol polyprotein from transposo... 140 1e-43
gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposo... 137 1e-43
gb|KYP72919.1| Retrovirus-related Pol polyprotein from transposo... 137 1e-43
gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposo... 137 1e-43
gb|KYP42039.1| Retrovirus-related Pol polyprotein from transposo... 137 1e-43
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 154 bits (390), Expect(3) = 4e-50
Identities = 76/124 (61%), Positives = 94/124 (75%)
Frame = -1
Query: 492 GAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIH 313
GAISWKA LQ T+ALSTTEAEY+A EA KEALW+KGLV G+ QD V CDSQSAIH
Sbjct: 1717 GAISWKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIH 1776
Query: 312 LAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALD 133
L K+Q +H+RTKHIDVRYH +R+ V + ++ + K+ T+KNPAD++TK IP KFK LD
Sbjct: 1777 LTKNQMFHERTKHIDVRYHFVREHVTQGDIV-ISKVATEKNPADMLTKVIPAYKFKHCLD 1835
Query: 132 FIHV 121
I +
Sbjct: 1836 LIGI 1839
Score = 59.7 bits (143), Expect(3) = 4e-50
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKGLL 483
LRYLRG+AD+ L++ + + + V GYVD+DYAGDLD RRS TGYVFT G +
Sbjct: 1667 LRYLRGSADLCLVYDQSDCTSSVT--GYVDSDYAGDLDKRRSLTGYVFTYSGGAI 1719
Score = 33.5 bits (75), Expect(3) = 4e-50
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+SVVSR+MS K+H +AVKW+L G
Sbjct: 1644 AVSVVSRYMSCPGKEHWQAVKWILRYLRG 1672
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 154 bits (389), Expect(3) = 6e-50
Identities = 76/122 (62%), Positives = 93/122 (76%)
Frame = -1
Query: 492 GAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIH 313
GAISWKA LQ T+ALSTTEAEY+A EA KEALW+KGLV G+ QD V CDSQSAIH
Sbjct: 1696 GAISWKAVLQSTVALSTTEAEYMALAEAVKEALWMKGLVSSLGLQQDFTVVFCDSQSAIH 1755
Query: 312 LAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALD 133
L K+Q +H+RTKHIDVRYH +R+ V + ++ + K+ T+KNPAD++TK IP KFK LD
Sbjct: 1756 LTKNQMFHERTKHIDVRYHFVREHVTQGDIV-ISKVATEKNPADMLTKVIPAYKFKHCLD 1814
Query: 132 FI 127
I
Sbjct: 1815 LI 1816
Score = 59.7 bits (143), Expect(3) = 6e-50
Identities = 31/55 (56%), Positives = 40/55 (72%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKGLL 483
LRYLRG+AD+ L++ + + + V GYVD+DYAGDLD RRS TGYVFT G +
Sbjct: 1646 LRYLRGSADLCLVYDQSDCTSSVT--GYVDSDYAGDLDKRRSLTGYVFTYSGGAI 1698
Score = 33.5 bits (75), Expect(3) = 6e-50
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+SVVSR+MS K+H +AVKW+L G
Sbjct: 1623 AVSVVSRYMSCPGKEHWQAVKWILRYLRG 1651
>gb|PRQ16639.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 502
Score = 151 bits (381), Expect(2) = 1e-46
Identities = 75/132 (56%), Positives = 92/132 (69%)
Frame = -1
Query: 516 GLCLHSGEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVH 337
G G G +SWK+ LQ ALSTTEAEY+A EASKEA+WL GL FGI Q+ V V
Sbjct: 369 GYVFTCGGGPVSWKSTLQAVTALSTTEAEYMALTEASKEAIWLNGLASEFGIHQEGVVVK 428
Query: 336 CDSQSAIHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPV 157
CDSQSAIHLAK+Q +H RTKHIDVRYH++R WV+ +I + K+ T N AD +TK + V
Sbjct: 429 CDSQSAIHLAKNQVFHARTKHIDVRYHRIRDWVESGNII-VEKVHTNDNAADCLTKPVAV 487
Query: 156 EKFKSALDFIHV 121
EKFK L+ + V
Sbjct: 488 EKFKHCLNLLSV 499
Score = 64.3 bits (155), Expect(2) = 1e-46
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFT 501
LRYL+GT +G++F+R +E V G+VDADYAGDLD RRSTTGYVFT
Sbjct: 327 LRYLKGTRQLGIMFERKQEVACVA--GFVDADYAGDLDKRRSTTGYVFT 373
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 148 bits (373), Expect(3) = 3e-46
Identities = 72/128 (56%), Positives = 97/128 (75%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G G++SW++ LQ TIALSTTEAEYIAA EA KEA+WLKGL+ G+IQ+++ V CD+QSA
Sbjct: 169 GGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQSA 228
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSA 139
I LAK+Q YH RTKHIDV+YH +R+ ++ V+ + KI TK NP+D++TK + KF+
Sbjct: 229 IFLAKNQTYHARTKHIDVKYHYVREIIEGGDVL-LKKIDTKDNPSDMLTKVVSEVKFQHC 287
Query: 138 LDFIHVLR 115
L I +LR
Sbjct: 288 LKLIQILR 295
Score = 58.9 bits (141), Expect(3) = 3e-46
Identities = 31/53 (58%), Positives = 38/53 (71%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 489
LRYL GT DVGLLF++ Q GY D+D+AGDLD +RST+GYVFT+ G
Sbjct: 122 LRYLYGTVDVGLLFKK---NCGQQCVGYCDSDFAGDLDKQRSTSGYVFTLGGG 171
Score = 27.7 bits (60), Expect(3) = 3e-46
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVL 644
A+S+VSR+M N K AVKW+L
Sbjct: 99 AVSMVSRYMHNPGKSQWLAVKWIL 122
>gb|KYP57718.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 418
Score = 145 bits (365), Expect(3) = 2e-45
Identities = 69/121 (57%), Positives = 91/121 (75%)
Frame = -1
Query: 489 AISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 310
A+SWKA LQ +ALSTTEAEYIA E KE LWLKG++ GI Q+ VQ+HCDSQSAIHL
Sbjct: 296 AVSWKANLQSVVALSTTEAEYIALAEGVKEGLWLKGMLNELGIEQECVQIHCDSQSAIHL 355
Query: 309 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALDF 130
A Q YH+RTKHIDV++H +R+ V+ + +VKI ++ NPAD++TK++P KF+ LD
Sbjct: 356 ANHQMYHERTKHIDVKHHFIREVVETG-TVRIVKIASEDNPADMLTKSLPRCKFERCLDL 414
Query: 129 I 127
+
Sbjct: 415 V 415
Score = 55.8 bits (133), Expect(3) = 2e-45
Identities = 25/50 (50%), Positives = 38/50 (76%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRY+ GT + GLL+++ +G ++G+VDADYAG +D R+S +GYVFT+
Sbjct: 244 LRYVNGTLESGLLYRKRHQGGAA-IEGFVDADYAGCVDTRKSLSGYVFTL 292
Score = 31.6 bits (70), Expect(3) = 2e-45
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+SVVSRFM N + H E +KW+L G
Sbjct: 221 AVSVVSRFMGNPGQAHWETLKWMLRYVNG 249
>gb|PPD98036.1| hypothetical protein GOBAR_DD04975 [Gossypium barbadense]
Length = 1034
Score = 137 bits (345), Expect(3) = 5e-45
Identities = 67/110 (60%), Positives = 85/110 (77%)
Frame = -1
Query: 492 GAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIH 313
G ISWK+ LQ T+ALSTTEAEY+A EA KEA+WL+G+VK G++Q+ V+CDSQSAIH
Sbjct: 896 GPISWKSTLQSTVALSTTEAEYMAVTEAVKEAIWLQGMVKTLGLVQEHFNVYCDSQSAIH 955
Query: 312 LAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAI 163
LAK+Q YH RTKHIDVR+H +R+ +D K I + KI T N AD+MTK +
Sbjct: 956 LAKNQVYHARTKHIDVRFHFVREIIDEGK-IHLQKIKTADNLADMMTKVL 1004
Score = 60.8 bits (146), Expect(3) = 5e-45
Identities = 31/53 (58%), Positives = 39/53 (73%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 489
LRY+ T D+GLLF++ + + GYVD+DYAGDLD RRSTTGYVFT+ G
Sbjct: 845 LRYIHKTMDIGLLFKQDTTLGKCVV-GYVDSDYAGDLDKRRSTTGYVFTLAGG 896
Score = 32.7 bits (73), Expect(3) = 5e-45
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVL 644
A+S+VSR+M N K H +AVKW+L
Sbjct: 822 AVSIVSRYMHNPGKGHWQAVKWIL 845
>dbj|GAU51472.1| hypothetical protein TSUD_95870 [Trifolium subterraneum]
Length = 1682
Score = 141 bits (356), Expect(3) = 2e-44
Identities = 66/122 (54%), Positives = 90/122 (73%)
Frame = -1
Query: 489 AISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 310
A++WKA Q +ALSTT+AEYIA VE KEA+WLKG++ GI Q V++HCDSQS IHL
Sbjct: 1129 AVTWKANQQSVVALSTTQAEYIALVEGVKEAIWLKGMIGEMGISQGCVKIHCDSQSVIHL 1188
Query: 309 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALDF 130
A Q YH+RTKHID+R H +R ++ ++I + K+ +K+NPAD+ TK++P KFK LD
Sbjct: 1189 ANHQVYHERTKHIDIRLHFVRDMIETKEII-VEKVASKENPADMFTKSLPRVKFKHCLDL 1247
Query: 129 IH 124
I+
Sbjct: 1248 IN 1249
Score = 53.9 bits (128), Expect(3) = 2e-44
Identities = 24/50 (48%), Positives = 37/50 (74%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRYL G+ GL +++++ G L+GYVDADY G++D R+S +G+VFT+
Sbjct: 1077 LRYLNGSLKGGLRYKKIDPGKDA-LEGYVDADYVGNVDTRKSLSGFVFTL 1125
Score = 33.5 bits (75), Expect(3) = 2e-44
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+SVVSRFM+N + H +A+KWVL G
Sbjct: 1054 AISVVSRFMANPGQVHWQALKWVLRYLNG 1082
>gb|KYP68590.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 523
Score = 133 bits (334), Expect(3) = 2e-44
Identities = 61/118 (51%), Positives = 88/118 (74%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G A+SW +++Q+ +ALSTTEAEY+A EASKE +WL+GL+ G IQ+ +H DSQSA
Sbjct: 397 GTTAVSWMSQVQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKSVLHSDSQSA 456
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFK 145
IHLAK+ +H RTKHID+RYH +R ++ D+V+ + KI +NPAD++TK + ++K K
Sbjct: 457 IHLAKNSAFHSRTKHIDIRYHFIRSLLE-DEVLTLKKILGSRNPADMLTKVVTIDKLK 513
Score = 59.3 bits (142), Expect(3) = 2e-44
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRYLRGT + L F + ++++QGYVDADY G++D RRSTTGY+FTV
Sbjct: 351 LRYLRGTTERCLHFGK----GKIKVQGYVDADYGGEVDHRRSTTGYIFTV 396
Score = 36.6 bits (83), Expect(3) = 2e-44
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+ VVSRFMSN K H EAVKW+L G
Sbjct: 328 AVGVVSRFMSNPGKAHWEAVKWILRYLRG 356
>gb|KYP69326.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 389
Score = 133 bits (334), Expect(3) = 2e-44
Identities = 61/118 (51%), Positives = 88/118 (74%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G A+SW +++Q+ +ALSTTEAEY+A EASKE +WL+GL+ G IQ+ +H DSQSA
Sbjct: 263 GTTAVSWMSQVQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKSVLHSDSQSA 322
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFK 145
IHLAK+ +H RTKHID+RYH +R ++ D+V+ + KI +NPAD++TK + ++K K
Sbjct: 323 IHLAKNSAFHSRTKHIDIRYHFIRSLLE-DEVLTLKKILGSRNPADMLTKVVTIDKLK 379
Score = 59.3 bits (142), Expect(3) = 2e-44
Identities = 29/50 (58%), Positives = 38/50 (76%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRYLRGT + L F + ++++QGYVDADY G++D RRSTTGY+FTV
Sbjct: 217 LRYLRGTTERCLHFGK----GKIKVQGYVDADYGGEVDHRRSTTGYIFTV 262
Score = 36.6 bits (83), Expect(3) = 2e-44
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+ VVSRFMSN K H EAVKW+L G
Sbjct: 194 AVGVVSRFMSNPGKAHWEAVKWILRYLRG 222
>pir||S23312 retrovirus-related polyprotein KAS-1 - Arabidopsis thaliana
retrotransposon Ta1 (fragment)
emb|CAA37917.1| reverse transcriptase, partial [Arabidopsis thaliana]
Length = 587
Score = 145 bits (365), Expect(3) = 4e-44
Identities = 71/128 (55%), Positives = 97/128 (75%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G +SWKA LQ ALSTTEAE++A EA+KEALW+KGL+K G+ QD V + CDSQSA
Sbjct: 459 GGNTVSWKANLQSVTALSTTEAEFMALTEAAKEALWIKGLMKDLGLEQDKVTLWCDSQSA 518
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSA 139
I L+K+ +H+RTKHIDVRY+ +R V+ V D++KI T +NPAD +TK+IPV KF+SA
Sbjct: 519 ICLSKNSTHHERTKHIDVRYNFIRDVVEAGDV-DVLKIHTSRNPADALTKSIPVNKFQSA 577
Query: 138 LDFIHVLR 115
L+ + +++
Sbjct: 578 LELLKLVK 585
Score = 56.2 bits (134), Expect(3) = 4e-44
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRY+RG+ D+ L+F + +E ++ GY D+DYA DLD RRS +GYVFTV
Sbjct: 412 LRYMRGSQDLNLVFTKEKE---FRVTGYCDSDYAADLDRRRSVSGYVFTV 458
Score = 26.6 bits (57), Expect(3) = 4e-44
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 712 LSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
+ +VSR+M+ H EAVKW+L G
Sbjct: 390 ICLVSRYMARPGSIHWEAVKWILRYMRG 417
>gb|PNX85388.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 377
Score = 129 bits (325), Expect(3) = 4e-44
Identities = 60/118 (50%), Positives = 87/118 (73%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G GA+SW + +Q+ +ALSTTEAEY+A EASKE +WL+GL+ G IQ+ ++ DSQSA
Sbjct: 251 GTGAVSWISRIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKSVLYSDSQSA 310
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFK 145
IHLAK+ +H RTKHI +RYH +R ++ D+V+ + KI +NPAD++TK + ++K K
Sbjct: 311 IHLAKNSAFHSRTKHIGLRYHFIRSLLE-DEVLTLSKIQGSENPADMLTKVVTIDKLK 367
Score = 62.0 bits (149), Expect(3) = 4e-44
Identities = 31/53 (58%), Positives = 40/53 (75%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTVVKG 489
LRYLRGT + L F + ++++QGYVDAD+AGD+D RRSTTGY+FTV G
Sbjct: 205 LRYLRGTIEKCLYFVK----GELKVQGYVDADFAGDVDHRRSTTGYIFTVGTG 253
Score = 36.2 bits (82), Expect(3) = 4e-44
Identities = 18/29 (62%), Positives = 20/29 (68%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+ VVSRFMSN K H EAVKW+L G
Sbjct: 182 AVXVVSRFMSNPGKAHWEAVKWILRYLRG 210
>gb|KOM47916.1| hypothetical protein LR48_Vigan07g162000 [Vigna angularis]
Length = 222
Score = 133 bits (334), Expect(3) = 4e-44
Identities = 62/118 (52%), Positives = 87/118 (73%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G A+SW +++Q+ +ALSTTEAEY+A EASKE +WL+GL+ G IQ+ +H DSQSA
Sbjct: 96 GTTAVSWMSQIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQEKTVLHSDSQSA 155
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFK 145
IHLAK+ +H RTKHID+RYH +R ++ D+V+ + KI KNPAD++TK + EK +
Sbjct: 156 IHLAKNSTFHSRTKHIDLRYHFIRSLLE-DEVLTLRKILGSKNPADMLTKVVTTEKLR 212
Score = 58.5 bits (140), Expect(3) = 4e-44
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRYLR T + L F + ++++QGYVDAD+AG++D RRSTTGY+FTV
Sbjct: 50 LRYLRKTKEKCLCFSK----GELKVQGYVDADFAGEIDYRRSTTGYIFTV 95
Score = 36.2 bits (82), Expect(3) = 4e-44
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVL 644
A+ VVSRFMSN K H EAVKW+L
Sbjct: 27 AVGVVSRFMSNPGKAHWEAVKWIL 50
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 142 bits (357), Expect(3) = 6e-44
Identities = 70/126 (55%), Positives = 88/126 (69%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G +SWKA LQ T+ LSTTEAEY+A EA+KE +WLKGLV G+ D V+CDS SA
Sbjct: 1183 GGSVVSWKATLQPTVTLSTTEAEYMALTEAAKEGIWLKGLVSDLGLHHDQATVYCDSLSA 1242
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSA 139
I LAKDQ +H+RTKHIDVRYH LR +K I + K+GT NPAD+ TK +P KF+
Sbjct: 1243 ICLAKDQVHHERTKHIDVRYHFLRS----EKRIKVKKVGTADNPADMFTKPVPQSKFQHC 1298
Query: 138 LDFIHV 121
LD +++
Sbjct: 1299 LDLLNI 1304
Score = 58.9 bits (141), Expect(3) = 6e-44
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = -2
Query: 644 RYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
RYLRGT+DVGL++ Q + GY D+DYAGD+D RRS TGYVFT+
Sbjct: 1137 RYLRGTSDVGLIYGG---DTQCLVTGYSDSDYAGDVDTRRSMTGYVFTL 1182
Score = 26.2 bits (56), Expect(3) = 6e-44
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+SVVSRFM ++H +AVK + G
Sbjct: 1113 AVSVVSRFMGQPGREHWQAVKRIFRYLRG 1141
>emb|CAB75481.1| copia-like polyprotein [Arabidopsis thaliana]
Length = 1363
Score = 144 bits (363), Expect(3) = 8e-44
Identities = 69/132 (52%), Positives = 97/132 (73%)
Frame = -1
Query: 516 GLCLHSGEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVH 337
GL G ISWK+ LQ +A S+TE EY++ EA KEA+WLKGL+K FG Q +V++
Sbjct: 1230 GLVFTLGGNTISWKSGLQRVVAQSSTECEYMSLTEAVKEAIWLKGLLKDFGYEQKNVEIF 1289
Query: 336 CDSQSAIHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPV 157
CDSQSAI L+K+ +H+RTKHIDV++H +R+ + D +++ KI T+KNPAD+ TK +PV
Sbjct: 1290 CDSQSAIALSKNNVHHERTKHIDVKFHFIRE-IIADGKVEVSKISTEKNPADIFTKVLPV 1348
Query: 156 EKFKSALDFIHV 121
KF++ALDF+ V
Sbjct: 1349 NKFQTALDFLRV 1360
Score = 52.4 bits (124), Expect(3) = 8e-44
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRY++GT D L ++R + + GY DADYA DLD RRS TG VFT+
Sbjct: 1189 LRYIKGTVDTRLCYKR---NSDFSICGYCDADYAADLDKRRSITGLVFTL 1235
Score = 30.0 bits (66), Expect(3) = 8e-44
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = -3
Query: 712 LSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
+ VVSRFMS K+H VKWVL +G
Sbjct: 1167 VGVVSRFMSQPAKEHWLGVKWVLRYIKG 1194
>gb|KYP40337.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1269
Score = 132 bits (331), Expect(3) = 8e-44
Identities = 62/118 (52%), Positives = 87/118 (73%)
Frame = -1
Query: 498 GEGAISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSA 319
G A+SW +++Q+ +ALSTTEAEY+A EASKE +WL+GL+ G IQ+ +H DSQSA
Sbjct: 1143 GTTAVSWMSQIQKIVALSTTEAEYVAVTEASKELIWLQGLLTELGFIQERSVLHSDSQSA 1202
Query: 318 IHLAKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFK 145
IHLAK+ +H RTKHID+RYH +R ++ D+V+ + KI KNPAD++TK + EK +
Sbjct: 1203 IHLAKNSTFHSRTKHIDLRYHFIRSLLE-DEVLTLRKILGSKNPADMLTKVVTTEKLR 1259
Score = 58.5 bits (140), Expect(3) = 8e-44
Identities = 28/50 (56%), Positives = 38/50 (76%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRYLR T + L F + ++++QGYVDAD+AG++D RRSTTGY+FTV
Sbjct: 1097 LRYLRATKEKCLCFSK----GELKVQGYVDADFAGEIDHRRSTTGYIFTV 1142
Score = 36.2 bits (82), Expect(3) = 8e-44
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVL 644
A+ VVSRFMSN K H EAVKW+L
Sbjct: 1074 AVGVVSRFMSNPGKAHWEAVKWIL 1097
>gb|PNX61902.1| retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Trifolium pratense]
Length = 275
Score = 140 bits (353), Expect(3) = 1e-43
Identities = 65/122 (53%), Positives = 91/122 (74%)
Frame = -1
Query: 489 AISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 310
A++WKA Q +ALSTT+AEYIA VE KEA+WLKG++ GI Q V++HCDSQSAIHL
Sbjct: 152 AVTWKANQQSVVALSTTQAEYIALVEGVKEAIWLKGMIGELGIGQGCVKIHCDSQSAIHL 211
Query: 309 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALDF 130
A Q YH+RTKHID+R H +R ++ ++I + K+ +++NPAD+ TK++P +FK LD
Sbjct: 212 ANHQVYHERTKHIDIRLHFVRDMIETKEII-VEKVASEENPADMFTKSLPRSRFKHCLDL 270
Query: 129 IH 124
I+
Sbjct: 271 IN 272
Score = 52.4 bits (124), Expect(3) = 1e-43
Identities = 24/50 (48%), Positives = 37/50 (74%)
Frame = -2
Query: 647 LRYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
LRYL G+ GL +++++ L+GYVDADYAG++D R+S +G+VFT+
Sbjct: 100 LRYLNGSLKGGLRYKKIDPRKDA-LEGYVDADYAGNVDTRKSLSGFVFTL 148
Score = 33.5 bits (75), Expect(3) = 1e-43
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+SVVSRFM+N + H +A+KWVL G
Sbjct: 77 AISVVSRFMANPGQVHWQALKWVLRYLNG 105
>gb|KYP48513.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1032
Score = 137 bits (346), Expect(3) = 1e-43
Identities = 67/121 (55%), Positives = 88/121 (72%)
Frame = -1
Query: 489 AISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 310
AISWKA LQ ALSTTEAEY++A E KEALW++GLVK G+ QD + V CDSQSAIHL
Sbjct: 908 AISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHL 967
Query: 309 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALDF 130
K+ RYH +TKHIDV++H +R V +V+ + K+ T +NPAD++TK +P KF+ L
Sbjct: 968 TKNSRYHDKTKHIDVKHHFIRDIVTIGEVL-LQKVHTSENPADMLTKPLPNAKFQHCLGL 1026
Query: 129 I 127
+
Sbjct: 1027 V 1027
Score = 57.0 bits (136), Expect(3) = 1e-43
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = -2
Query: 644 RYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
RYL+GT+++GL+F R + + G+VD+DY GDLD RRS +GY+FT+
Sbjct: 857 RYLKGTSNIGLVFDR-NKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTL 904
Score = 31.2 bits (69), Expect(3) = 1e-43
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+S+VSR+M N K H AVKW+ +G
Sbjct: 833 AVSMVSRYMHNPGKDHWSAVKWIFRYLKG 861
>gb|KYP72919.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 865
Score = 137 bits (346), Expect(3) = 1e-43
Identities = 67/121 (55%), Positives = 88/121 (72%)
Frame = -1
Query: 489 AISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 310
AISWKA LQ ALSTTEAEY++A E KEALW++GLVK G+ QD + V CDSQSAIHL
Sbjct: 741 AISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHL 800
Query: 309 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALDF 130
K+ RYH +TKHIDV++H +R V +V+ + K+ T +NPAD++TK +P KF+ L
Sbjct: 801 TKNSRYHDKTKHIDVKHHFIRDIVTIGEVL-LQKVHTSENPADMLTKPLPNAKFQHCLGL 859
Query: 129 I 127
+
Sbjct: 860 V 860
Score = 57.0 bits (136), Expect(3) = 1e-43
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = -2
Query: 644 RYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
RYL+GT+++GL+F R + + G+VD+DY GDLD RRS +GY+FT+
Sbjct: 690 RYLKGTSNIGLVFDR-NKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTL 737
Score = 31.2 bits (69), Expect(3) = 1e-43
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+S+VSR+M N K H AVKW+ +G
Sbjct: 666 AVSMVSRYMHNPGKDHWSAVKWIFRYLKG 694
>gb|KYP53356.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 503
Score = 137 bits (346), Expect(3) = 1e-43
Identities = 67/121 (55%), Positives = 88/121 (72%)
Frame = -1
Query: 489 AISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 310
AISWKA LQ ALSTTEAEY++A E KEALW++GLVK G+ QD + V CDSQSAIHL
Sbjct: 379 AISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHL 438
Query: 309 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALDF 130
K+ RYH +TKHIDV++H +R V +V+ + K+ T +NPAD++TK +P KF+ L
Sbjct: 439 TKNSRYHDKTKHIDVKHHFIRDIVTIGEVL-LQKVHTSENPADMLTKPLPNAKFQHCLGL 497
Query: 129 I 127
+
Sbjct: 498 V 498
Score = 57.0 bits (136), Expect(3) = 1e-43
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = -2
Query: 644 RYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
RYL+GT+++GL+F R + + G+VD+DY GDLD RRS +GY+FT+
Sbjct: 328 RYLKGTSNIGLVFDR-NKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTL 375
Score = 31.2 bits (69), Expect(3) = 1e-43
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+S+VSR+M N K H AVKW+ +G
Sbjct: 304 AVSMVSRYMHNPGKDHWSAVKWIFRYLKG 332
>gb|KYP42039.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 394
Score = 137 bits (346), Expect(3) = 1e-43
Identities = 67/121 (55%), Positives = 88/121 (72%)
Frame = -1
Query: 489 AISWKAELQETIALSTTEAEYIAAVEASKEALWLKGLVKPFGIIQDSVQVHCDSQSAIHL 310
AISWKA LQ ALSTTEAEY++A E KEALW++GLVK G+ QD + V CDSQSAIHL
Sbjct: 270 AISWKASLQSIAALSTTEAEYVSATEGVKEALWIRGLVKELGLTQDVLTVFCDSQSAIHL 329
Query: 309 AKDQRYHKRTKHIDVRYHKLRQWVDRDKVIDMVKIGTKKNPADVMTKAIPVEKFKSALDF 130
K+ RYH +TKHIDV++H +R V +V+ + K+ T +NPAD++TK +P KF+ L
Sbjct: 330 TKNSRYHDKTKHIDVKHHFIRDIVTIGEVL-LQKVHTSENPADMLTKPLPNAKFQHCLGL 388
Query: 129 I 127
+
Sbjct: 389 V 389
Score = 57.0 bits (136), Expect(3) = 1e-43
Identities = 25/49 (51%), Positives = 37/49 (75%)
Frame = -2
Query: 644 RYLRGTADVGLLFQRLEEGNQVQLQGYVDADYAGDLDLRRSTTGYVFTV 498
RYL+GT+++GL+F R + + G+VD+DY GDLD RRS +GY+FT+
Sbjct: 219 RYLKGTSNIGLVFDR-NKATTNNVAGFVDSDYGGDLDRRRSLSGYIFTL 266
Score = 31.2 bits (69), Expect(3) = 1e-43
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 715 ALSVVSRFMSNS*KQH*EAVKWVLDTCEG 629
A+S+VSR+M N K H AVKW+ +G
Sbjct: 195 AVSMVSRYMHNPGKDHWSAVKWIFRYLKG 223