BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00007014
         (558 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020265237.1| RNA polymerase sigma factor sigC isoform X1 ...   150   7e-45
ref|XP_020265238.1| RNA polymerase sigma factor sigC isoform X2 ...   150   7e-45
ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC ...    93   5e-21
ref|XP_010909938.2| PREDICTED: RNA polymerase sigma factor sigC ...    82   7e-17
ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC ...    75   2e-12
ref|XP_009395048.1| PREDICTED: RNA polymerase sigma factor sigC ...    54   9e-12
gb|OVA08500.1| RNA polymerase sigma-70 [Macleaya cordata]              72   2e-11
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC ...    61   3e-10
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]    54   6e-08
gb|AKC88686.1| sigma factor [Geranium incanum]                         60   3e-07
ref|XP_008365120.1| PREDICTED: RNA polymerase sigma factor sigC-...    51   2e-06
ref|XP_020105596.1| RNA polymerase sigma factor sigC [Ananas com...    51   5e-06

>ref|XP_020265237.1| RNA polymerase sigma factor sigC isoform X1 [Asparagus officinalis]
 gb|ONK70030.1| uncharacterized protein A4U43_C05F29530 [Asparagus officinalis]
          Length = 543

 Score =  150 bits (378), Expect(2) = 7e-45
 Identities = 84/134 (62%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
 Frame = -2

Query: 548 NYKRWAFPIQPSTVPKQSHRHSSALRGREASFESGRSTHHVILEGGEVHQYTSKVYRCYS 369
           +YKRWAFPIQPS  PKQ  RH +AL GREA FESGRSTHH++LEGGEV++   K Y   S
Sbjct: 8   SYKRWAFPIQPSA-PKQPLRHPTALTGREALFESGRSTHHLVLEGGEVYRDAPKAYTYSS 66

Query: 368 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASL-RSSSKLQFSLLM 192
           GA  +         SSKI+D+E Y GSYNSS PI  MED+ A V SL RSSS +QFSLLM
Sbjct: 67  GATQS-------TRSSKIHDVELYRGSYNSSSPINTMEDSPACVESLRRSSSHIQFSLLM 119

Query: 191 ENLDKIEDILGGTD 150
           ENL +IEDIL G D
Sbjct: 120 ENLGEIEDILAGGD 133



 Score = 58.5 bits (140), Expect(2) = 7e-45
 Identities = 30/57 (52%), Positives = 39/57 (68%)
 Frame = -3

Query: 172 KISLAVPTWTLTGPTEAQSDFLLTEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           K+  A  + TL  PT   SDFLLTE+FR Y     + +QEA TIVR+G+SE+R+LRR
Sbjct: 152 KLFRACLSRTLMAPTSINSDFLLTENFRGYSSSFPLSRQEAPTIVRSGRSEERRLRR 208


>ref|XP_020265238.1| RNA polymerase sigma factor sigC isoform X2 [Asparagus officinalis]
          Length = 496

 Score =  150 bits (378), Expect(2) = 7e-45
 Identities = 84/134 (62%), Positives = 96/134 (71%), Gaps = 1/134 (0%)
 Frame = -2

Query: 548 NYKRWAFPIQPSTVPKQSHRHSSALRGREASFESGRSTHHVILEGGEVHQYTSKVYRCYS 369
           +YKRWAFPIQPS  PKQ  RH +AL GREA FESGRSTHH++LEGGEV++   K Y   S
Sbjct: 8   SYKRWAFPIQPSA-PKQPLRHPTALTGREALFESGRSTHHLVLEGGEVYRDAPKAYTYSS 66

Query: 368 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASL-RSSSKLQFSLLM 192
           GA  +         SSKI+D+E Y GSYNSS PI  MED+ A V SL RSSS +QFSLLM
Sbjct: 67  GATQS-------TRSSKIHDVELYRGSYNSSSPINTMEDSPACVESLRRSSSHIQFSLLM 119

Query: 191 ENLDKIEDILGGTD 150
           ENL +IEDIL G D
Sbjct: 120 ENLGEIEDILAGGD 133



 Score = 58.5 bits (140), Expect(2) = 7e-45
 Identities = 30/57 (52%), Positives = 39/57 (68%)
 Frame = -3

Query: 172 KISLAVPTWTLTGPTEAQSDFLLTEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           K+  A  + TL  PT   SDFLLTE+FR Y     + +QEA TIVR+G+SE+R+LRR
Sbjct: 152 KLFRACLSRTLMAPTSINSDFLLTENFRGYSSSFPLSRQEAPTIVRSGRSEERRLRR 208


>ref|XP_008799751.1| PREDICTED: RNA polymerase sigma factor sigC [Phoenix dactylifera]
          Length = 567

 Score = 93.2 bits (230), Expect(2) = 5e-21
 Identities = 65/145 (44%), Positives = 89/145 (61%), Gaps = 13/145 (8%)
 Frame = -2

Query: 542 KRWAFPIQPSTVPK---------QSHRHSSALRGREASFESGR-STHHVILEGGEV-HQY 396
           KRWAFPIQ S +P          Q H  SS  R REA  E G+ S  H+  E  E+ H+ 
Sbjct: 10  KRWAFPIQ-SPLPTNPCARLLDHQHHPPSSFFRVREAFSEPGKVSLQHLFTERVELLHRD 68

Query: 395 TSKVYRCYSGALHNIESTSVYEESSKIN-DMEFYSGSYNSSRPITMME-DTSAYVASLRS 222
           TSK   C   A  +IE+ S   +++++N D +   G+++ +RPI MME D+SAY A L +
Sbjct: 69  TSKACVCSFEAPQSIENMSA--DANEVNMDRKLLRGAHDLNRPINMMENDSSAYHARLTA 126

Query: 221 SSKLQFSLLMENLDKIEDILGGTDM 147
           SS LQ++LLMENLD+IED+  GTD+
Sbjct: 127 SSSLQYNLLMENLDRIEDVFAGTDL 151



 Score = 35.4 bits (80), Expect(2) = 5e-21
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = -3

Query: 133 PTEAQSDFLLTEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           PT   S+FL +EH     ++  + +Q+   IVR+GK ++RKLRR
Sbjct: 182 PTADNSNFLHSEHSGGCSLEFPLVEQKHNIIVRSGKKKERKLRR 225


>ref|XP_010909938.2| PREDICTED: RNA polymerase sigma factor sigC [Elaeis guineensis]
          Length = 604

 Score = 82.4 bits (202), Expect(2) = 7e-17
 Identities = 59/142 (41%), Positives = 80/142 (56%), Gaps = 10/142 (7%)
 Frame = -2

Query: 542 KRWAFPIQPSTVPKQ-----SHRHS--SALRGREASFESGR-STHHVILEGGEV-HQYTS 390
           KRWAFPIQ             H H   S  R RE SFE G+ S+  +  E  E+ H+ T 
Sbjct: 51  KRWAFPIQSPLATNPCARLLDHHHPPPSFFRVREVSFELGKVSSQRLFTERVELLHRDTL 110

Query: 389 KVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMME-DTSAYVASLRSSSK 213
           K Y C   A  +IE+ S   ++ K+N           +RPI M+E D+S+Y A L++SS 
Sbjct: 111 KAYVCSFEAPQSIENMSA--DACKVN---IDKKLLKENRPINMIEEDSSSYNARLKASSS 165

Query: 212 LQFSLLMENLDKIEDILGGTDM 147
           LQ+SLLMENL++IED+  GTD+
Sbjct: 166 LQYSLLMENLERIEDVFAGTDL 187



 Score = 32.3 bits (72), Expect(2) = 7e-17
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -3

Query: 145 TLTGPTEAQSDFLLTEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           TL  PT   S+ L ++H     ++  + +Q+   IV +GK ++RKLRR
Sbjct: 214 TLMAPTADNSNSLHSKHSGGCSLEFPLGEQKHNIIVHSGKKKERKLRR 261


>ref|XP_010244378.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
 ref|XP_010244379.1| PREDICTED: RNA polymerase sigma factor sigC [Nelumbo nucifera]
          Length = 558

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 52/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%)
 Frame = -2

Query: 539 RWAFPIQPSTVPKQSHR-HSSALRGREASFESGRSTH-HVILEGGEVHQYTS-KVYRCYS 369
           +W FP+Q   +   S R HSS +R REA FES R +   VI E  E  Q    K Y C S
Sbjct: 8   KWVFPVQSHLLSHSSTRNHSSFVRSREAYFESARMSFLSVIPEESETLQKDPLKAYACSS 67

Query: 368 GALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMM--EDTSAYVASLRSSSKLQFSLL 195
           G L  + +             EF++  Y++   I++   ED+SA++ASL++     FSLL
Sbjct: 68  GTLQPVNNGYAAIGVKMNTSKEFHNSLYDTFEDISIATPEDSSAFLASLQARKISCFSLL 127

Query: 194 MENLDKIEDILGGTDM 147
           MEN++KIEDI   +D+
Sbjct: 128 MENVEKIEDIFVSSDL 143


>ref|XP_009395048.1| PREDICTED: RNA polymerase sigma factor sigC [Musa acuminata subsp.
           malaccensis]
          Length = 570

 Score = 53.5 bits (127), Expect(2) = 9e-12
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
 Frame = -2

Query: 425 ILEGGEV-HQYTSKVYRCYSGALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDT 249
           +L+GG++ H  T +      G + ++E  S      K++         +  + I MME +
Sbjct: 57  VLDGGKLLHTSTLRANASLFGEIQSVEGISDNAPEVKLDGWSSRI-CLDLDKQIPMMEAS 115

Query: 248 SAYVASLRSSSKLQFSLLMENLDKIEDILGGTDM 147
           SA+ ASL   + L+F+LLMEN+D+IED++ G DM
Sbjct: 116 SAFHASLTVKTPLEFNLLMENIDRIEDLIAGADM 149



 Score = 43.9 bits (102), Expect(2) = 9e-12
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = -3

Query: 142 LTGPTEAQSDFLLTEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           L G T   SDF++ +H  D P +  +  ++ +TIV +GK E+RKLRR
Sbjct: 178 LMGSTVVYSDFMVNKHLSDCPSEPLLDDKKGSTIVHSGKKEKRKLRR 224


>gb|OVA08500.1| RNA polymerase sigma-70 [Macleaya cordata]
          Length = 553

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
 Frame = -2

Query: 539 RWAFPIQPSTVPKQSHR-HSSALRGREASFESGR-STHHVILEGGEVH-QYTSKVYRCYS 369
           +W FP+Q S     S + +SS++RG+E S+ES R S   VI +  E   +   K Y C S
Sbjct: 8   KWVFPVQSSFPTNSSTKLYSSSVRGKEVSYESARVSILSVIPDESEPFIKDPFKAYACSS 67

Query: 368 GALHNIESTSV-YEESSKINDMEFYSGSYNSSRPIT--MMEDTSAYVASLRSSSKLQFSL 198
           GAL  +ES+SV  EE   + +   Y   YN    IT  M ++ S   +SLR +    FSL
Sbjct: 68  GALEIMESSSVEMEEMKMVINKGSYRTLYNPIDGITIPMQDERSTSASSLRENKTSYFSL 127

Query: 197 LMENLDKIEDILGGTDM 147
           LM++L+K+E+I    D+
Sbjct: 128 LMDSLEKVEEIFVDADL 144


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor sigC [Vitis vinifera]
 emb|CBI20603.3| unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score = 61.2 bits (147), Expect(2) = 3e-10
 Identities = 50/139 (35%), Positives = 74/139 (53%), Gaps = 8/139 (5%)
 Frame = -2

Query: 539 RWAFPIQ-PSTVPKQSHRHSSALRGREASFESGR-STHHVILEGGE-VHQYTSKVYRCYS 369
           +W FPI  P+     S   +S+++G+EASF+S R S   V  E  E +++   K + C S
Sbjct: 10  KWDFPISCPTLTNSPSRLCTSSVQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSS 69

Query: 368 GALHNIESTSVYEESSKINDMEFYSGSY-----NSSRPITMMEDTSAYVASLRSSSKLQF 204
           GAL   E+     E+ K+   +   G        S  PI   ED SA VA L++S   QF
Sbjct: 70  GALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIG--EDISASVAGLQASKASQF 127

Query: 203 SLLMENLDKIEDILGGTDM 147
           SLL+ENLD +E++   ++M
Sbjct: 128 SLLLENLDILEEMFADSNM 146



 Score = 30.8 bits (68), Expect(2) = 3e-10
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 103 TEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           TEH R+   + TV       +VR+GK E+RK +R
Sbjct: 187 TEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKR 220


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score = 53.5 bits (127), Expect(2) = 6e-08
 Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
 Frame = -2

Query: 497 SHRHSSALRGREASFESGR-STHHVILEGGE-VHQYTSKVYRCYSGALHNIESTSVYEES 324
           +H     ++G+EASF+S R S   V  E  E +++   K + C SGAL   E+     E+
Sbjct: 75  NHETDPYIQGKEASFDSTRFSFPSVTSEDCESLYKDPFKPFACSSGALQTFENDYSAMEA 134

Query: 323 SKINDMEFYSGSY-----NSSRPITMMEDTSAYVASLRSSSKLQFSLLMENLDKIEDILG 159
            K+   +   G        S  PI   ED SA VA L++S   QFSLL+ENLD +E++  
Sbjct: 135 MKMKIGKCSHGDLFKIVNASQAPIG--EDISASVAGLQASKASQFSLLLENLDILEEMFA 192

Query: 158 GTDM 147
            ++M
Sbjct: 193 DSNM 196



 Score = 30.8 bits (68), Expect(2) = 6e-08
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 103 TEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           TEH R+   + TV       +VR+GK E+RK +R
Sbjct: 237 TEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKR 270


>gb|AKC88686.1| sigma factor [Geranium incanum]
          Length = 551

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
 Frame = -2

Query: 539 RWAFPIQPSTVPKQSHRHSSALRGREASFESGRSTHHVIL--EGGEVHQYTSKVYRCYSG 366
           +W FPI   ++P    +    +RGRE SF   R     ++  EG   H+   K Y   S 
Sbjct: 12  KWDFPIHSHSLPTSPFKLPPPVRGRETSFSGTRWLFLPVISEEGENSHRELLKAYSSSSA 71

Query: 365 ALHNIESTSVYEESSKINDMEFYSGSYNSSRPITMMEDTSAYVASLRSSSKLQFSLLMEN 186
           A   ++     +E   + D++   GSYN  R    M + S+  ASL ++   QF+LLMEN
Sbjct: 72  APQTLD-----DEFLGLGDIQINKGSYNGRRS---MIEVSSSQASLHATKPAQFNLLMEN 123

Query: 185 LDKIED 168
           L+ +E+
Sbjct: 124 LNVLEE 129


>ref|XP_008365120.1| PREDICTED: RNA polymerase sigma factor sigC-like [Malus domestica]
          Length = 559

 Score = 51.2 bits (121), Expect(2) = 2e-06
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 9/146 (6%)
 Frame = -2

Query: 557 YNYNYKRWAFPIQPS---TVPKQSHRHSSALRGREASFESGR-STHHVILEGGEVH-QYT 393
           +  N  +  FP+Q S   T    S   S+++RGRE SF S R S   +I E GE   + T
Sbjct: 5   FRLNLLKSGFPLQRSHWQTASSPSXLSSASVRGREGSFNSARLSFLSIISEEGETSGKDT 64

Query: 392 SKVYRCYSGALHNIESTSVYEESSKINDMEFY----SGSYNSSRPITMMEDTSAYVASLR 225
            K+Y C S +   +E     +  S + ++ F     S S N++    M +        L 
Sbjct: 65  LKIYSCSSASPQILE-----DGFSNLEEIRFRRVPKSSSSNTTGNNQMPDGDFRSSKGLE 119

Query: 224 SSSKLQFSLLMENLDKIEDILGGTDM 147
           + S   FSLL++NLD +E+    +D+
Sbjct: 120 ACSAAHFSLLLKNLDALEETFANSDV 145



 Score = 28.1 bits (61), Expect(2) = 2e-06
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 145 TLTGPTEAQSDFLLTEHFRDYPIDSTVRKQEAATIVRTGKSEQRKLRR 2
           TLT  +      + T    +Y +D  V      TIV +GK E+R+ R+
Sbjct: 172 TLTSSSFXDLSDIPTVPIEEYKMDKKVDNDRGKTIVWSGKKEERRSRK 219


>ref|XP_020105596.1| RNA polymerase sigma factor sigC [Ananas comosus]
          Length = 544

 Score = 51.2 bits (121), Expect(2) = 5e-06
 Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
 Frame = -2

Query: 419 EGGEVHQYTSKVYRCYSGALHNIESTSVYEESSKIN-DMEFYSGSYNSSRPITMMED--T 249
           E   + + T K    YS AL  +++ S   ++ K N D      S +    + +M +  T
Sbjct: 51  ERANLRRATFKASAYYSTALQGVDNVSDDVKAMKENMDRNCRGESRDVYETVNVMNENVT 110

Query: 248 SAYVASLRSSSKLQFSLLMENLDKIEDILGGTDM 147
           +A  A L + S LQF+LLMENL  IEDIL GTDM
Sbjct: 111 AAAAAKLGAKSYLQFNLLMENLHDIEDILSGTDM 144



 Score = 26.6 bits (57), Expect(2) = 5e-06
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 79  IDSTVRKQEAATIVRTGKSEQRKLRR 2
           ++++  +Q    IVRT K+ +RKLRR
Sbjct: 183 VETSFDEQNDRVIVRTAKARERKLRR 208