BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ophiopogon24_contig00006747
         (591 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020255546.1| putative exosome complex component rrp40 iso...   358   e-124
ref|XP_020106314.1| putative exosome complex component rrp40 iso...   350   e-120
gb|OAY75957.1| putative exosome complex component rrp40 [Ananas ...   350   e-120
ref|XP_010251261.1| PREDICTED: putative exosome complex componen...   347   e-119
ref|XP_012478611.1| PREDICTED: putative exosome complex componen...   345   e-119
ref|XP_010924257.1| PREDICTED: putative exosome complex componen...   346   e-119
ref|XP_006439811.1| putative exosome complex component rrp40 [Ci...   345   e-118
dbj|GAY38871.1| hypothetical protein CUMW_040050 [Citrus unshiu]      345   e-118
ref|XP_016666803.1| PREDICTED: putative exosome complex componen...   345   e-118
ref|XP_012478610.1| PREDICTED: putative exosome complex componen...   345   e-118
gb|OVA07587.1| Exosome complex RNA-binding protein 1/RRP40/RRP4 ...   345   e-118
ref|XP_008806895.1| PREDICTED: putative exosome complex componen...   344   e-118
ref|XP_002282635.1| PREDICTED: putative exosome complex componen...   343   e-118
ref|XP_022738928.1| putative exosome complex component rrp40 iso...   343   e-118
ref|XP_007036203.1| PREDICTED: putative exosome complex componen...   342   e-117
gb|OMO81471.1| Exosome complex RNA-binding protein 1/RRP40/RRP4 ...   342   e-117
ref|XP_006476772.1| PREDICTED: putative exosome complex componen...   342   e-117
ref|XP_021292055.1| putative exosome complex component rrp40 [He...   342   e-117
ref|XP_012080072.1| putative exosome complex component rrp40 [Ja...   341   e-117
ref|XP_002318044.1| exonuclease-related family protein [Populus ...   341   e-117

>ref|XP_020255546.1| putative exosome complex component rrp40 isoform X1 [Asparagus
           officinalis]
 gb|ONK81783.1| uncharacterized protein A4U43_C01F32830 [Asparagus officinalis]
          Length = 242

 Score =  358 bits (920), Expect = e-124
 Identities = 177/196 (90%), Positives = 185/196 (94%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           NS PT+LL+KIVVPGDVVLDLS   NQTIKLGAGLRQECDT+S+M+AGKLR LKPNKYW+
Sbjct: 7   NSHPTSLLEKIVVPGDVVLDLSKLTNQTIKLGAGLRQECDTISSMKAGKLRHLKPNKYWI 66

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRY PCVED ILGIVVDSKPDNFL+DIKGPSLAFLPVLAFEGGTRRNIPKFEVG+L
Sbjct: 67  ESSEKRYAPCVEDAILGIVVDSKPDNFLIDIKGPSLAFLPVLAFEGGTRRNIPKFEVGSL 126

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LYVRVVKANSGMN ELSCTDASGKAAEFGPLK GYMFETSTGLSRMLLSSPTCPVLEALG
Sbjct: 127 LYVRVVKANSGMNAELSCTDASGKAAEFGPLKGGYMFETSTGLSRMLLSSPTCPVLEALG 186

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFE AVGLNGRVW
Sbjct: 187 KKLSFETAVGLNGRVW 202


>ref|XP_020106314.1| putative exosome complex component rrp40 isoform X1 [Ananas
           comosus]
          Length = 235

 Score =  350 bits (898), Expect = e-120
 Identities = 170/193 (88%), Positives = 182/193 (94%)
 Frame = +3

Query: 12  PTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESS 191
           PTNL+DK VVPGDVVLDLS+  NQTIKLGAGLRQ+CDT+SAM+AGKLR  KPNKYW+ESS
Sbjct: 4   PTNLVDKPVVPGDVVLDLSTMANQTIKLGAGLRQDCDTISAMKAGKLRLSKPNKYWIESS 63

Query: 192 HKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYV 371
            KRYVPCVEDT+LGIVVD+KPDNFLVDIKGP+LAFLPVLAFEGGTRRNIPKFE+GTL+Y 
Sbjct: 64  QKRYVPCVEDTVLGIVVDTKPDNFLVDIKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYA 123

Query: 372 RVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKL 551
           RVVKANS MNPELSCTDA GKAAEFGPLKDGYMFETSTGL+RMLLSSP CPVLEALGKKL
Sbjct: 124 RVVKANSIMNPELSCTDAGGKAAEFGPLKDGYMFETSTGLARMLLSSPMCPVLEALGKKL 183

Query: 552 SFEIAVGLNGRVW 590
           SFE AVGLNGRVW
Sbjct: 184 SFETAVGLNGRVW 196


>gb|OAY75957.1| putative exosome complex component rrp40 [Ananas comosus]
          Length = 235

 Score =  350 bits (897), Expect = e-120
 Identities = 169/193 (87%), Positives = 182/193 (94%)
 Frame = +3

Query: 12  PTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESS 191
           PTNL+DK VVPGDVVLDLS+  NQTIKLGAGLRQ+CDT+SAM+AGKLR  KPNKYW+ESS
Sbjct: 4   PTNLVDKPVVPGDVVLDLSTMANQTIKLGAGLRQDCDTISAMKAGKLRLSKPNKYWIESS 63

Query: 192 HKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYV 371
            KRYVPCVEDT+LGIVVD+KPDNFLVD+KGP+LAFLPVLAFEGGTRRNIPKFE+GTL+Y 
Sbjct: 64  QKRYVPCVEDTVLGIVVDTKPDNFLVDVKGPNLAFLPVLAFEGGTRRNIPKFEIGTLIYA 123

Query: 372 RVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKL 551
           RVVKANS MNPELSCTDA GKAAEFGPLKDGYMFETSTGL+RMLLSSP CPVLEALGKKL
Sbjct: 124 RVVKANSIMNPELSCTDAGGKAAEFGPLKDGYMFETSTGLARMLLSSPMCPVLEALGKKL 183

Query: 552 SFEIAVGLNGRVW 590
           SFE AVGLNGRVW
Sbjct: 184 SFETAVGLNGRVW 196


>ref|XP_010251261.1| PREDICTED: putative exosome complex component rrp40 isoform X1
           [Nelumbo nucifera]
          Length = 243

 Score =  347 bits (891), Expect = e-119
 Identities = 170/192 (88%), Positives = 181/192 (94%)
 Frame = +3

Query: 15  TNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESSH 194
           T+ +D+IVVPGDVVLDLSS  NQTIKLG GLRQ+CDT+S M+AGKL+F KPNKYWVESS 
Sbjct: 10  TSFIDQIVVPGDVVLDLSSMSNQTIKLGGGLRQDCDTISVMKAGKLKFSKPNKYWVESSQ 69

Query: 195 KRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYVR 374
           KRYVPCVEDTILG VVDSK DNFLVDIKGP+LAFLPVLAFEGGTRRNIPK+E GTLLYVR
Sbjct: 70  KRYVPCVEDTILGTVVDSKADNFLVDIKGPTLAFLPVLAFEGGTRRNIPKYEAGTLLYVR 129

Query: 375 VVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLS 554
           VVKAN+GMNPELSCTDASGKAAEFG LKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLS
Sbjct: 130 VVKANAGMNPELSCTDASGKAAEFGVLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLS 189

Query: 555 FEIAVGLNGRVW 590
           FEIA+GLNGRVW
Sbjct: 190 FEIAIGLNGRVW 201


>ref|XP_012478611.1| PREDICTED: putative exosome complex component rrp40 isoform X2
           [Gossypium raimondii]
 gb|KJB30310.1| hypothetical protein B456_005G137000 [Gossypium raimondii]
          Length = 202

 Score =  345 bits (884), Expect = e-119
 Identities = 168/196 (85%), Positives = 179/196 (91%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +S P + +D  VVPGDVVLDLSS  NQTIKLG GLRQ+CD +SAM+AG LRF KPNKYW+
Sbjct: 6   SSSPASFVDSTVVPGDVVLDLSSMTNQTIKLGGGLRQDCDAISAMKAGTLRFSKPNKYWI 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRYVPCVEDTILGIVVDSK DNFL+DIKGP++ FLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  ESSQKRYVPCVEDTILGIVVDSKADNFLIDIKGPAMGFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LY+RVVKAN GMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSR LLSSP CPVLEALG
Sbjct: 126 LYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPACPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIAVGLNGRVW
Sbjct: 186 KKLSFEIAVGLNGRVW 201


>ref|XP_010924257.1| PREDICTED: putative exosome complex component rrp40 [Elaeis
           guineensis]
          Length = 242

 Score =  346 bits (888), Expect = e-119
 Identities = 167/196 (85%), Positives = 181/196 (92%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           N   T+ +D+IV+PGD VLDLS+  NQTIKLG GLRQ+CDT+S M+AGKLR  KPNKYWV
Sbjct: 8   NPPLTSCIDRIVLPGDTVLDLSTMANQTIKLGEGLRQDCDTISVMKAGKLRLSKPNKYWV 67

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESSHKRYVPC EDTILGIVVDSKPDNFLVDIKGP+LA LPVLAFEGGTRRNIPKFEVGTL
Sbjct: 68  ESSHKRYVPCAEDTILGIVVDSKPDNFLVDIKGPTLALLPVLAFEGGTRRNIPKFEVGTL 127

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LYVRVVKAN+ MNPELSCTDA+GKAAEFGPLKDGYMFETSTGL+RMLL SPTCP+LEALG
Sbjct: 128 LYVRVVKANNSMNPELSCTDATGKAAEFGPLKDGYMFETSTGLARMLLGSPTCPILEALG 187

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIA+GLNGRVW
Sbjct: 188 KKLSFEIAIGLNGRVW 203


>ref|XP_006439811.1| putative exosome complex component rrp40 [Citrus clementina]
 ref|XP_006439812.1| putative exosome complex component rrp40 [Citrus clementina]
 gb|ESR53051.1| hypothetical protein CICLE_v10021986mg [Citrus clementina]
 gb|ESR53052.1| hypothetical protein CICLE_v10021986mg [Citrus clementina]
          Length = 238

 Score =  345 bits (885), Expect = e-118
 Identities = 168/192 (87%), Positives = 181/192 (94%)
 Frame = +3

Query: 15  TNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESSH 194
           TNL+DKIVVPGDVVLDLSS  NQTIKLG GLRQECD++S ++AGKLRF KPNKYWVESSH
Sbjct: 8   TNLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSH 67

Query: 195 KRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYVR 374
           KRYVPCVEDT+LGIVVD K DNF VDI+GP++AFLPVLAFEGGTRRNIPKFE+G+LLYVR
Sbjct: 68  KRYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVR 127

Query: 375 VVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLS 554
           VVKAN GMNPELSCTDASGKAAEFG LKDGYMFETS+GLSRMLLSSPTCPVLE LGK+LS
Sbjct: 128 VVKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSSGLSRMLLSSPTCPVLEELGKQLS 187

Query: 555 FEIAVGLNGRVW 590
           FEIAVGLNGRVW
Sbjct: 188 FEIAVGLNGRVW 199


>dbj|GAY38871.1| hypothetical protein CUMW_040050 [Citrus unshiu]
          Length = 238

 Score =  345 bits (884), Expect = e-118
 Identities = 168/191 (87%), Positives = 180/191 (94%)
 Frame = +3

Query: 18  NLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESSHK 197
           NL+DKIVVPGDVVLDLSS  NQTIKLG GLRQECD++S ++AGKLRF KPNKYWVESSHK
Sbjct: 9   NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSHK 68

Query: 198 RYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYVRV 377
           RYVPCVEDT+LGIVVD K DNF VDI+GP++AFLPVLAFEGGTRRNIPKFE+G+LLYVRV
Sbjct: 69  RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128

Query: 378 VKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLSF 557
           VKAN GMNPELSCTDASGKAAEFG LKDGYMFETSTGLSRMLLSSPTCPVLE LGK+LSF
Sbjct: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188

Query: 558 EIAVGLNGRVW 590
           EIAVGLNGRVW
Sbjct: 189 EIAVGLNGRVW 199


>ref|XP_016666803.1| PREDICTED: putative exosome complex component rrp40 isoform X2
           [Gossypium hirsutum]
 ref|XP_017635430.1| PREDICTED: putative exosome complex component rrp40 isoform X2
           [Gossypium arboreum]
          Length = 240

 Score =  345 bits (884), Expect = e-118
 Identities = 168/196 (85%), Positives = 180/196 (91%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +S P + +D  VVPGDVVLDLSS  +QTIKLG GLRQ+CD +SAM+AG LRF KPNKYW+
Sbjct: 6   SSSPASFVDSTVVPGDVVLDLSSMTSQTIKLGGGLRQDCDAISAMKAGTLRFSKPNKYWI 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRYVPCVEDTILGIVVDSK DNFL+DIKGP++ FLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  ESSQKRYVPCVEDTILGIVVDSKADNFLIDIKGPAMGFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LY+RVVKAN GMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSR LLSSPTCPVLEALG
Sbjct: 126 LYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIAVGLNGRVW
Sbjct: 186 KKLSFEIAVGLNGRVW 201


>ref|XP_012478610.1| PREDICTED: putative exosome complex component rrp40 isoform X1
           [Gossypium raimondii]
 gb|KJB30309.1| hypothetical protein B456_005G137000 [Gossypium raimondii]
          Length = 240

 Score =  345 bits (884), Expect = e-118
 Identities = 168/196 (85%), Positives = 179/196 (91%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +S P + +D  VVPGDVVLDLSS  NQTIKLG GLRQ+CD +SAM+AG LRF KPNKYW+
Sbjct: 6   SSSPASFVDSTVVPGDVVLDLSSMTNQTIKLGGGLRQDCDAISAMKAGTLRFSKPNKYWI 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRYVPCVEDTILGIVVDSK DNFL+DIKGP++ FLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  ESSQKRYVPCVEDTILGIVVDSKADNFLIDIKGPAMGFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LY+RVVKAN GMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSR LLSSP CPVLEALG
Sbjct: 126 LYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPACPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIAVGLNGRVW
Sbjct: 186 KKLSFEIAVGLNGRVW 201


>gb|OVA07587.1| Exosome complex RNA-binding protein 1/RRP40/RRP4 [Macleaya cordata]
          Length = 241

 Score =  345 bits (884), Expect = e-118
 Identities = 168/192 (87%), Positives = 179/192 (93%)
 Frame = +3

Query: 15  TNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESSH 194
           T L+DKIVVPGDVVLDLS   NQTIKLG GLRQ+CD +S M++GKLRF KPNKYWVESS 
Sbjct: 11  TTLVDKIVVPGDVVLDLSKMANQTIKLGDGLRQDCDAISVMKSGKLRFSKPNKYWVESSQ 70

Query: 195 KRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYVR 374
           KRYVPC EDT+LGIVVD + DNFLVDIKGP+LAFLPVLAFEGGTRRNIPKFEVGTL+YVR
Sbjct: 71  KRYVPCAEDTVLGIVVDQRADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEVGTLIYVR 130

Query: 375 VVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLS 554
           VVKAN+GMNPELSCTDASGKAAEFGPLKDGY FE+STGLSRMLLSSPTCPVLEALGKKLS
Sbjct: 131 VVKANTGMNPELSCTDASGKAAEFGPLKDGYTFESSTGLSRMLLSSPTCPVLEALGKKLS 190

Query: 555 FEIAVGLNGRVW 590
           FEIAVGLNGRVW
Sbjct: 191 FEIAVGLNGRVW 202


>ref|XP_008806895.1| PREDICTED: putative exosome complex component rrp40 [Phoenix
           dactylifera]
          Length = 242

 Score =  344 bits (883), Expect = e-118
 Identities = 168/189 (88%), Positives = 179/189 (94%)
 Frame = +3

Query: 24  LDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESSHKRY 203
           +D++VVPGD VLDLS+  NQTIKLG GLRQ+ D +S M+AGKLR  KPNKYWVESSHKRY
Sbjct: 15  VDQLVVPGDTVLDLSTMSNQTIKLGEGLRQDSDKISVMKAGKLRLSKPNKYWVESSHKRY 74

Query: 204 VPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYVRVVK 383
           VPCVEDTILGIVVDSKPDNFLVDIKGP+LAFLPVLAFEGGTRRNIPKFEVGTLLYVRVVK
Sbjct: 75  VPCVEDTILGIVVDSKPDNFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGTLLYVRVVK 134

Query: 384 ANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLSFEI 563
           AN+ MNPELSCTDASGKAAEFGPLKDGYMFETSTGL+RMLLSSPTCPVLEALGKKLSFEI
Sbjct: 135 ANNSMNPELSCTDASGKAAEFGPLKDGYMFETSTGLARMLLSSPTCPVLEALGKKLSFEI 194

Query: 564 AVGLNGRVW 590
           A+GLNGRVW
Sbjct: 195 AIGLNGRVW 203


>ref|XP_002282635.1| PREDICTED: putative exosome complex component rrp40 isoform X1
           [Vitis vinifera]
 emb|CBI15022.3| unnamed protein product, partial [Vitis vinifera]
          Length = 237

 Score =  343 bits (880), Expect = e-118
 Identities = 166/196 (84%), Positives = 181/196 (92%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           ++ P + +D++VVPGDVVLDLS   NQTIKLG GL Q+CD ++  +AG+LRF KPNKYWV
Sbjct: 3   DNTPASFVDQLVVPGDVVLDLSKMGNQTIKLGGGLHQDCDAITVTKAGRLRFSKPNKYWV 62

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRYVPCVEDT+LGIVVDSK DNFLVDIKGP+LAFLPVLAFEGGTRRNIPKFE GTL
Sbjct: 63  ESSQKRYVPCVEDTVLGIVVDSKADNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEAGTL 122

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LYVRVVKAN+GMNPELSCTDASGKAAEFGPLKDGYMFE+STGLSRMLLSSPTCPVLEALG
Sbjct: 123 LYVRVVKANTGMNPELSCTDASGKAAEFGPLKDGYMFESSTGLSRMLLSSPTCPVLEALG 182

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIAVGLNGRVW
Sbjct: 183 KKLSFEIAVGLNGRVW 198


>ref|XP_022738928.1| putative exosome complex component rrp40 isoform X1 [Durio
           zibethinus]
 ref|XP_022738929.1| putative exosome complex component rrp40 isoform X1 [Durio
           zibethinus]
          Length = 240

 Score =  343 bits (880), Expect = e-118
 Identities = 165/196 (84%), Positives = 179/196 (91%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           ++ P + +D  VVPGDVVLDLSS  NQT+KLG GLRQ+CD +SAM+AG LRF KPNKYWV
Sbjct: 6   SNSPASFIDSTVVPGDVVLDLSSMTNQTVKLGGGLRQDCDAISAMKAGTLRFSKPNKYWV 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRYVPCVEDT+LGIVVDSK DNFL+D+KGP++ FLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  ESSQKRYVPCVEDTVLGIVVDSKADNFLIDVKGPAVGFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LY+RVVKAN GMNPELSCTDA GKAAEFGPLKDGYMFETSTGLSR LLSSPTCPVLEALG
Sbjct: 126 LYLRVVKANFGMNPELSCTDAGGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIAVGLNGRVW
Sbjct: 186 KKLSFEIAVGLNGRVW 201


>ref|XP_007036203.1| PREDICTED: putative exosome complex component rrp40 isoform X1
           [Theobroma cacao]
 gb|EOY20704.1| PNAS-3 related isoform 1 [Theobroma cacao]
          Length = 240

 Score =  342 bits (878), Expect = e-117
 Identities = 168/196 (85%), Positives = 177/196 (90%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +  P +L+D  VVPGDVVLDLSS  NQTI LG GLRQ+CD +S M+AG LRF KPNKYWV
Sbjct: 6   SGSPPSLIDSTVVPGDVVLDLSSMTNQTIMLGGGLRQDCDAISVMKAGTLRFSKPNKYWV 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRY PCVEDT+LGIVVDSK DNFL+DIKGP LAFLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  ESSQKRYTPCVEDTVLGIVVDSKADNFLIDIKGPVLAFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LY+RVVKAN GMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSR LLSSPTCPVLEALG
Sbjct: 126 LYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIAVGLNGRVW
Sbjct: 186 KKLSFEIAVGLNGRVW 201


>gb|OMO81471.1| Exosome complex RNA-binding protein 1/RRP40/RRP4 [Corchorus
           capsularis]
          Length = 240

 Score =  342 bits (877), Expect = e-117
 Identities = 166/196 (84%), Positives = 177/196 (90%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +  P + +D  VVPGDVVLDLSS  NQTIKLG GLRQ+CD +S M+AG LRF KPNKYWV
Sbjct: 6   SGSPASFIDSTVVPGDVVLDLSSMTNQTIKLGGGLRQDCDAISVMKAGTLRFTKPNKYWV 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRYVPCVEDT+LGIVVDSK DN L+DIKGP+LAFLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  ESSQKRYVPCVEDTVLGIVVDSKADNLLIDIKGPALAFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LY+RVVKAN GMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSR LLSSPTCPVLEALG
Sbjct: 126 LYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KK+SFEIAVGLNGR W
Sbjct: 186 KKISFEIAVGLNGRAW 201


>ref|XP_006476772.1| PREDICTED: putative exosome complex component rrp40 [Citrus
           sinensis]
 ref|XP_006476773.1| PREDICTED: putative exosome complex component rrp40 [Citrus
           sinensis]
 ref|XP_015385315.1| PREDICTED: putative exosome complex component rrp40 [Citrus
           sinensis]
 ref|XP_015385316.1| PREDICTED: putative exosome complex component rrp40 [Citrus
           sinensis]
 gb|KDO69672.1| hypothetical protein CISIN_1g026458mg [Citrus sinensis]
 gb|KDO69673.1| hypothetical protein CISIN_1g026458mg [Citrus sinensis]
          Length = 238

 Score =  342 bits (876), Expect = e-117
 Identities = 167/191 (87%), Positives = 179/191 (93%)
 Frame = +3

Query: 18  NLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWVESSHK 197
           NL+DKIVVPGDVVLDLSS  NQTIKLG GLRQECD++S ++AGKLRF KPNKYWVESS K
Sbjct: 9   NLVDKIVVPGDVVLDLSSMTNQTIKLGGGLRQECDSVSVIKAGKLRFSKPNKYWVESSQK 68

Query: 198 RYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTLLYVRV 377
           RYVPCVEDT+LGIVVD K DNF VDI+GP++AFLPVLAFEGGTRRNIPKFE+G+LLYVRV
Sbjct: 69  RYVPCVEDTVLGIVVDCKADNFFVDIRGPTIAFLPVLAFEGGTRRNIPKFEIGSLLYVRV 128

Query: 378 VKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALGKKLSF 557
           VKAN GMNPELSCTDASGKAAEFG LKDGYMFETSTGLSRMLLSSPTCPVLE LGK+LSF
Sbjct: 129 VKANPGMNPELSCTDASGKAAEFGLLKDGYMFETSTGLSRMLLSSPTCPVLEELGKQLSF 188

Query: 558 EIAVGLNGRVW 590
           EIAVGLNGRVW
Sbjct: 189 EIAVGLNGRVW 199


>ref|XP_021292055.1| putative exosome complex component rrp40 [Herrania umbratica]
 ref|XP_021292056.1| putative exosome complex component rrp40 [Herrania umbratica]
 ref|XP_021292057.1| putative exosome complex component rrp40 [Herrania umbratica]
          Length = 240

 Score =  342 bits (876), Expect = e-117
 Identities = 167/196 (85%), Positives = 176/196 (89%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +  P +L+D  VVPGDVVLDLSS  NQTIKLG GLRQ+CD +S M+AG LRF KPNKYWV
Sbjct: 6   SGSPASLIDSTVVPGDVVLDLSSMTNQTIKLGGGLRQDCDAISVMKAGTLRFSKPNKYWV 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           ESS KRY PCVED +LGIVVDSK DNFL+DIKGP LAFLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  ESSQKRYTPCVEDAVLGIVVDSKADNFLIDIKGPVLAFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LY+RVVKAN GMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSR LLSSPTCPVLEALG
Sbjct: 126 LYLRVVKANFGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRKLLSSPTCPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIA GLNGRVW
Sbjct: 186 KKLSFEIAAGLNGRVW 201


>ref|XP_012080072.1| putative exosome complex component rrp40 [Jatropha curcas]
 gb|KDP31104.1| hypothetical protein JCGZ_11480 [Jatropha curcas]
          Length = 241

 Score =  341 bits (875), Expect = e-117
 Identities = 166/196 (84%), Positives = 180/196 (91%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +S PT+L+DK+VVPGDVV+DLS+  NQTIKLG GLRQ+CD +S  ++GKLRF KPNKYWV
Sbjct: 6   SSSPTSLVDKLVVPGDVVIDLSTMSNQTIKLGGGLRQDCDAISVTKSGKLRFSKPNKYWV 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           E S KRYVPC ED++LGIVVDSK +NFLVDIKGP+LAFLPVLAFEGGTRRNIPKFEVGTL
Sbjct: 66  EGSQKRYVPCAEDSVLGIVVDSKAENFLVDIKGPTLAFLPVLAFEGGTRRNIPKFEVGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LYVRVVKAN GMNPELSCTDASGKAAEFG LKDGYMFE STGLSRMLLSSPTCPVLEALG
Sbjct: 126 LYVRVVKANPGMNPELSCTDASGKAAEFGVLKDGYMFECSTGLSRMLLSSPTCPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
            KLSFEIAVGLNGRVW
Sbjct: 186 NKLSFEIAVGLNGRVW 201


>ref|XP_002318044.1| exonuclease-related family protein [Populus trichocarpa]
 gb|ABK93275.1| unknown [Populus trichocarpa]
 gb|PNT10068.1| hypothetical protein POPTR_012G080300v3 [Populus trichocarpa]
          Length = 242

 Score =  341 bits (875), Expect = e-117
 Identities = 165/196 (84%), Positives = 178/196 (90%)
 Frame = +3

Query: 3   NSQPTNLLDKIVVPGDVVLDLSSKRNQTIKLGAGLRQECDTLSAMEAGKLRFLKPNKYWV 182
           +  P   +D +VVPGDVV+DLSS  NQTIKLG+GLRQ+CD +S M+AGKLRF KPNKYWV
Sbjct: 6   SGSPATFIDNLVVPGDVVVDLSSMTNQTIKLGSGLRQDCDAISVMKAGKLRFSKPNKYWV 65

Query: 183 ESSHKRYVPCVEDTILGIVVDSKPDNFLVDIKGPSLAFLPVLAFEGGTRRNIPKFEVGTL 362
           E+S KRYVPC ED++LGIVVDSK DNFL+DIKGP+LAFLPVLAFEGGTRRNIPKFE GTL
Sbjct: 66  ETSQKRYVPCAEDSVLGIVVDSKSDNFLIDIKGPALAFLPVLAFEGGTRRNIPKFEAGTL 125

Query: 363 LYVRVVKANSGMNPELSCTDASGKAAEFGPLKDGYMFETSTGLSRMLLSSPTCPVLEALG 542
           LYVRVVKAN GMNPELSCTDASGKAAEFG LKDGYMFE STGLSRMLLSSPTCPVLEALG
Sbjct: 126 LYVRVVKANPGMNPELSCTDASGKAAEFGALKDGYMFECSTGLSRMLLSSPTCPVLEALG 185

Query: 543 KKLSFEIAVGLNGRVW 590
           KKLSFEIAVGLNGRVW
Sbjct: 186 KKLSFEIAVGLNGRVW 201