BLASTX nr result
ID: Ophiopogon24_contig00002362
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ophiopogon24_contig00002362
(1069 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposo... 196 2e-53
gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum] 189 1e-50
gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium bar... 181 1e-47
gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium bar... 181 7e-47
gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium bar... 181 7e-47
gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposo... 174 1e-45
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] >gi|133711... 173 4e-44
gb|PHT34285.1| hypothetical protein CQW23_26085 [Capsicum baccatum] 167 3e-43
gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii] 160 4e-43
gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposo... 167 4e-43
gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinen... 162 2e-42
gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposo... 157 4e-41
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa] 163 1e-40
gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis] 162 2e-40
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 162 3e-40
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 162 3e-40
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 160 7e-40
gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 159 3e-39
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 158 6e-39
gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis] 157 7e-39
>gb|KYP71220.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 690
Score = 196 bits (499), Expect = 2e-53
Identities = 106/298 (35%), Positives = 166/298 (55%), Gaps = 5/298 (1%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ EF S+I +L+ +E K++DED+ +LL+ SLPS YK F++ ++Y +T+ +VK +L
Sbjct: 122 HLNEFNSIIMDLENIEIKIDDEDKAVLLIVSLPSTYKHFKEIMLYSNNDTLSFEDVKSNL 181
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAREKNSNGGSAGNPKFK----NYICNWCHRKGHIKA 721
L+K+K D + E +G S +EK S K + N C +C + GH +
Sbjct: 182 LSKEKFDLDIHSEDKGEGLSVRGRTQEKGSTSNKKSRSKSRGRKSNKTCRYCKKFGHDIS 241
Query: 720 DCKAWKKSKSNSKQDGATTNLA-IEDEDSCDVLSVTNSLVGNKRRWIIDSGRSQHVCTDR 544
DC KK + ++ A +E + DV+ +S +K WI+DSG + H+C +
Sbjct: 242 DCFILKKKQERQEKGKNPAEAANVETDSDGDVMISVSSDKRSKTEWILDSGCTFHMCPYK 301
Query: 543 EMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLGT 364
++F+T V GVV +GN T CK+ TIQ + HDG + TL +V +P + NLISLGT
Sbjct: 302 DLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSNVRFIPDLKRNLISLGT 361
Query: 363 LHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVTDGRK*FSSISTSRAVQ 190
L G + +E G + +S GA V +G++Y+LQGS+VT SS+S A +
Sbjct: 362 LESLGCKYSAEGGVLKVSKGAIVLLKANRIGSLYILQGSIVTGSAAVSSSMSDKDATK 419
>gb|PHT53674.1| hypothetical protein CQW23_08136 [Capsicum baccatum]
Length = 707
Score = 189 bits (480), Expect = 1e-50
Identities = 99/285 (34%), Positives = 161/285 (56%), Gaps = 11/285 (3%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ EF S+I +L+ ++ +++DED+ +LL+ SLP Y+ F++ ++YG T+ +VK +L
Sbjct: 120 HLGEFNSIIIDLENLDVEIDDEDKAVLLIVSLPPSYRHFKEIMLYGNNVTLSFDDVKSNL 179
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAREKNSNGGSAGNPKFKNY-----ICNWCHRKGHIK 724
L+K+K D+Q+ E S GL+ R +N G++G + K+ C +C ++ H
Sbjct: 180 LSKEKFDTQIHSE----SSGEGLVVRGRNHEVGASGKNQSKSKGKNSKYCRYCKKRNHEI 235
Query: 723 ADCKAWKKSKSNS------KQDGATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGRSQ 562
++C K ++ ++ + + E + C + S T +K W++DSG +
Sbjct: 236 SECYKLKNKQNREDKGKQPEKSAEASFVETESDGECFIASGTEQR--SKNEWVLDSGCTF 293
Query: 561 HVCTDREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYN 382
H+ +R+ F+TY S GG+V +GN CKVV K TI+ + HDG V TL V HVP + N
Sbjct: 294 HMSPNRDWFTTYESFNGGLVLMGNDAQCKVVGKGTIKIKTHDGVVRTLTSVRHVPDLKRN 353
Query: 381 LISLGTLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGS 247
LISLGTL G +E G + +S GA V G++Y+LQGS
Sbjct: 354 LISLGTLESQGCRYSAEGGVLKVSKGALVLLKAIRSGSLYLLQGS 398
>gb|PPD88818.1| hypothetical protein GOBAR_DD14224 [Gossypium barbadense]
Length = 718
Score = 181 bits (459), Expect = 1e-47
Identities = 101/261 (38%), Positives = 149/261 (57%), Gaps = 3/261 (1%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
HI++F +++N+L VE ++DEDQ +LLLCSLPS YKSF++ +IYG K+ + +VK HL
Sbjct: 388 HISQFITLLNDLKNVEVHIDDEDQAMLLLCSLPSSYKSFKETLIYG-KDKLSFEDVKGHL 446
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAREKNSNGGSAGNPKFKNYICNWCHRKGHIKADCKA 709
L++DK+D++ D +S L+A +K C +C + GH+KAD
Sbjct: 447 LSRDKLDNEFDLNSKADRQASVLVASKKREKR------------CRYCKKLGHVKADYYK 494
Query: 708 WKKSKSNSKQDGATTNLAIEDEDSCDVLSVTNSLVGNKR---RWIIDSGRSQHVCTDREM 538
+ ++ + + DE D L V+ S N + WI+DSG S H+ +RE
Sbjct: 495 LRNKRAAESNEEDVVGANLVDEGGDDFLLVSTS--DNSKLTSEWILDSGCSFHMYPNREW 552
Query: 537 FSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLGTLH 358
FSTY+SV GGVV +GN ++ K++ T++ R HDG + TL DV +VP R NLISL L
Sbjct: 553 FSTYSSVEGGVVHMGNDSSSKIIGIGTVKIRIHDGTIKTLSDVRYVPDLRKNLISLSILD 612
Query: 357 RDGFEIKSEDGAMLISNGARV 295
G I E + +S GA V
Sbjct: 613 LKGCRINIESSNIKVSRGALV 633
>gb|PPR84446.1| hypothetical protein GOBAR_AA36262 [Gossypium barbadense]
Length = 1841
Score = 181 bits (459), Expect = 7e-47
Identities = 99/285 (34%), Positives = 166/285 (58%), Gaps = 8/285 (2%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ +F S+I +L+ ++ K++DEDQ +++LCSLP Y++F D ++YG ++ + + EVK +
Sbjct: 645 HLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYG-RDDLTLEEVK-NA 702
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAREKN-SNGGSAG-----NPKFKNYICNWCHRKGHI 727
L+ ++ ++TG+ +++ GL+AR ++ + GGS+ + K C +C + GH+
Sbjct: 703 LSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRSQSKKRIQCYYCKKYGHM 762
Query: 726 KADCKAWKKSKSNSKQDGATTNLAIEDE--DSCDVLSVTNSLVGNKRRWIIDSGRSQHVC 553
K DC K+ + +Q N+A D D+ VL+V++S G RWI+D+G + H+
Sbjct: 763 KVDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGG--RWILDTGATFHIS 820
Query: 552 TDREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLIS 373
T ++ FSTY G V +GN C+V+ T++ + DG V TL DV H+P + NLIS
Sbjct: 821 TSKDAFSTYEK-HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLIS 879
Query: 372 LGTLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVT 238
L TL + GF +E G + + +GA L +Y L GS VT
Sbjct: 880 LSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVT 924
>gb|PPS20553.1| hypothetical protein GOBAR_AA00016 [Gossypium barbadense]
Length = 2351
Score = 181 bits (459), Expect = 7e-47
Identities = 99/285 (34%), Positives = 166/285 (58%), Gaps = 8/285 (2%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ +F S+I +L+ ++ K++DEDQ +++LCSLP Y++F D ++YG ++ + + EVK +
Sbjct: 624 HLDKFNSIIMDLNNIDNKIDDEDQAIIVLCSLPPSYENFVDTMMYG-RDDLTLEEVK-NA 681
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAREKN-SNGGSAG-----NPKFKNYICNWCHRKGHI 727
L+ ++ ++TG+ +++ GL+AR ++ + GGS+ + K C +C + GH+
Sbjct: 682 LSSSELRKKITGKVVENNEGEGLVARGRSKAKGGSSSKSHPRSQSKKRIQCYYCKKYGHM 741
Query: 726 KADCKAWKKSKSNSKQDGATTNLAIEDE--DSCDVLSVTNSLVGNKRRWIIDSGRSQHVC 553
K DC K+ + +Q N+A D D+ VL+V++S G RWI+D+G + H+
Sbjct: 742 KVDCPKRKEKSESQEQQNDRANVADADSSSDAEIVLAVSDSYAGG--RWILDTGATFHIS 799
Query: 552 TDREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLIS 373
T ++ FSTY G V +GN C+V+ T++ + DG V TL DV H+P + NLIS
Sbjct: 800 TSKDAFSTYEK-HSGSVLMGNDHACQVMGIGTVRIKMFDGIVRTLTDVRHIPEMKKNLIS 858
Query: 372 LGTLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVT 238
L TL + GF +E G + + +GA L +Y L GS VT
Sbjct: 859 LSTLDKKGFRYSAEGGVLKVFSGALTVIRGNLERGLYFLDGSSVT 903
>gb|KYP46254.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial
[Cajanus cajan]
Length = 609
Score = 174 bits (441), Expect = 1e-45
Identities = 107/280 (38%), Positives = 150/280 (53%), Gaps = 6/280 (2%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ E S++ EL ++ K+EDED ++LL SLP Y+SF +++ G KE I + EVK L
Sbjct: 56 HLDELNSILMELRYIDVKIEDEDAAMILLASLPPSYESFVNSLTVG-KECITMEEVKSSL 114
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAREKNSNGGSA---GNPKFK---NYICNWCHRKGHI 727
+++ +G+ GL+A NG G K K ICN+C GH
Sbjct: 115 HSRELWFKASANSEGVNGA--GLLAFNSTKNGKKKKEQGKKKTKVNPRDICNYCKEPGHW 172
Query: 726 KADCKAWKKSKSNSKQDGATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGRSQHVCTD 547
K DC KK S A + + E+E VLS+ ++ + +W++DSG S H+C +
Sbjct: 173 KKDCP--KKRNQKSVAVAAQEDSSFENEL---VLSIVDNHQHSAEQWVLDSGCSYHMCPN 227
Query: 546 REMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLG 367
R F TY GG VF+GN CK + TIQ + HDG + TL +V HVP + NLIS+G
Sbjct: 228 RSWFLTYEKKSGGDVFMGNDMACKTIGIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISVG 287
Query: 366 TLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGS 247
LH GF+ E G M IS G+ V GN+Y+LQGS
Sbjct: 288 VLHTKGFKCNVEGGVMEISKGSTVVIRGIKKGNLYMLQGS 327
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum]
gb|ABO36636.1| copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 173 bits (438), Expect = 4e-44
Identities = 104/291 (35%), Positives = 157/291 (53%), Gaps = 14/291 (4%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ + +++ EL ++ K+EDED L+LL SLP +++F + I G K+T+ + EV+ L
Sbjct: 118 HLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVG-KDTVSLEEVRSAL 176
Query: 888 LNKDKIDSQLTGEHLQDGSS-----SGLI--AREKNSNGGSAGNPKFKNY----ICNWCH 742
+++ H +G+S SGL +R+ NGG P K +CN+C
Sbjct: 177 HSREL-------RHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKPDDVCNYCK 229
Query: 741 RKGHIKADCKAWKKSKSNSKQDGATTNLAIEDEDSC---DVLSVTNSLVGNKRRWIIDSG 571
KGH K DC KK K + KQ + + A+ +ED+ D+ V + + W++DSG
Sbjct: 230 EKGHWKFDCP--KKKKQSEKQ---SVSAAVAEEDTNSEEDIALVADEHTHHSDVWVLDSG 284
Query: 570 RSQHVCTDREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRS 391
S H+C RE F+TY V GG + + NS+ CKVV +I+ R HDG TL++V HVP
Sbjct: 285 ASYHICPRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLM 344
Query: 390 RYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVT 238
NLISL L GF +DG + + G+ + + G +Y LQGS VT
Sbjct: 345 TKNLISLSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVT 395
>gb|PHT34285.1| hypothetical protein CQW23_26085 [Capsicum baccatum]
Length = 569
Score = 167 bits (423), Expect = 3e-43
Identities = 103/278 (37%), Positives = 150/278 (53%), Gaps = 16/278 (5%)
Frame = -2
Query: 1023 ETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHLLNKDKIDSQLTGEHL 844
+ +V DE +LLL SLP +K RD ++Y K+ I E+K L K++ID +TGE
Sbjct: 236 DAEVNDEYHAILLLISLPQSFKHIRDTMLYE-KDNISYKEIKSILKIKEQIDRDITGE-- 292
Query: 843 QDGSSS---GLIAREKNSN-------GGSAGNPKFKNYICNWCHRKGHIKADC-----KA 709
GS++ GL R ++S S K +N +C +CH+KGH+ ++C K
Sbjct: 293 --GSTTHGEGLFIRGRSSKKESNSERSQSRSKSKSRNVVCRYCHKKGHLISECCKLKNKE 350
Query: 708 WKKSKSNSKQDGATTNLAIE-DEDSCDVLSVTNSLVGNKRRWIIDSGRSQHVCTDREMFS 532
K N Q+ +T ++ DE + TNS + WI+DSG S H+ +R++F+
Sbjct: 351 KHKENKNEHQNVDSTEASMAADEFEGTIFLETNSSFKSNNEWILDSGCSYHMYPNRDLFT 410
Query: 531 TYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLGTLHRD 352
T+ SV GGV+ +G ST CKV DK T++ + HDG V TL DV +V + N+ISLGTL
Sbjct: 411 TFKSVGGGVILMGKSTPCKVFDKGTVRIKMHDGMVRTLTDVRYVSDLKKNIISLGTLESL 470
Query: 351 GFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVT 238
G + E G + S A V G +Y L GS+VT
Sbjct: 471 GCKYIGEGGVLKDSRDALVIIKAHRPGTLYTLLGSIVT 508
>gb|PON41343.1| Zinc finger, CCHC-type [Parasponia andersonii]
Length = 297
Score = 160 bits (406), Expect = 4e-43
Identities = 90/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)
Frame = -2
Query: 1065 IAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHLL 886
I +F +I++L+ +E K+EDED+ L+LL +LP Y+ F+DA++YG ++TI + EV+ +
Sbjct: 30 IDKFNKIIDDLENIEIKLEDEDKALILLNALPKAYEHFKDAMLYGREQTITLDEVQSAVK 89
Query: 885 NKDKIDSQLTGEHLQDGSSSGLIAR---EKNSNGGSAGNPKFKN---YICNWCHRKGHIK 724
K+ + E ++ + GL+AR EK N + K+ C CH++GH K
Sbjct: 90 AKELPRKK---EGKEENTGEGLMARGRSEKCDNKAPRNESRSKSKGRLKCFHCHKEGHFK 146
Query: 723 ADCKAWKKSKSNSKQDGATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGRSQHVCTDR 544
DC KK +D ++A + DS +VL VT+ + + WI+DSG S H+C +
Sbjct: 147 RDCPDRKKKVHEKPKDPGEASVASDGYDSAEVLVVTDE--DSSKEWIMDSGCSFHMCPTK 204
Query: 543 EMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLGT 364
F GG V +GN+ CKV +++ R DG L V +VP + NLISLG
Sbjct: 205 SWFENLEKTDGGSVLLGNNKPCKVAGIGSVRIRMFDGMERILQQVRYVPELKRNLISLGM 264
Query: 363 LHRDGFEIKSEDGAMLISNGARV 295
L +G+ K+E G++ +S G+ +
Sbjct: 265 LDMNGYSFKAEHGSLKVSKGSLI 287
>gb|KYP59893.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 593
Score = 167 bits (423), Expect = 4e-43
Identities = 104/281 (37%), Positives = 151/281 (53%), Gaps = 7/281 (2%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ E S++ EL + K+EDED ++LL SLP Y+SF +++ G KE I + EVK L
Sbjct: 108 HLDELNSILMELRDINVKIEDEDAAMILLASLPPSYESFVNSLSVG-KECITMEEVKSSL 166
Query: 888 LNKD-KIDSQLTGEHLQDGSSSGLIAREKNSNGGSA---GNPKFK---NYICNWCHRKGH 730
+++ + + E + + +GL+A +NG G K K ICN+C GH
Sbjct: 167 HSRELRFKASANSEGV---NGAGLLAFNSTTNGKKKKEQGKKKTKVNPRDICNYCKEPGH 223
Query: 729 IKADCKAWKKSKSNSKQDGATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGRSQHVCT 550
K DC KK S A + + E+E VLS+ ++ +W++DSG S H+C
Sbjct: 224 WKKDCP--KKRNQKSVVVAAQEDSSFENEL---VLSIVDNHQHFVEQWVLDSGCSYHMCP 278
Query: 549 DREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISL 370
+R F TY GG VF+GN CK + TIQ + HDG + TL +V HVP + NLIS+
Sbjct: 279 NRSWFLTYEKKFGGDVFMGNDMACKTISIGTIQIKMHDGVIRTLTEVRHVPDLKKNLISV 338
Query: 369 GTLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGS 247
G L GF+ E G M I+ G+ + GN+Y+LQGS
Sbjct: 339 GVLDTKGFKCNVEGGVMEINKGSTIVIRGIKKGNLYMLQGS 379
>gb|PRQ51350.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 460
Score = 162 bits (411), Expect = 2e-42
Identities = 104/283 (36%), Positives = 156/283 (55%), Gaps = 6/283 (2%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ F ++++L KV+ K+E+EDQ LLLL SLP Y++ I+YG K+T+K+ EV+ L
Sbjct: 124 HMNVFRGLVDQLAKVDVKIEEEDQALLLLTSLPDSYENIITTILYG-KDTLKMEEVESTL 182
Query: 888 LNKDKI----DSQLTGEHLQDGSSSGL-IAREKNSNGGSAGNPKFKNYICNWCHRKGHIK 724
LN +K DSQ++ QD + G AR + + S + K C C GHI+
Sbjct: 183 LNHEKRRKADDSQISVFVAQDQNRWGRSTARGSSGHSRSKSRGRGKGKQCYKCKEWGHIR 242
Query: 723 ADCKAWKKSKSNSKQDGATTNLAIEDEDSCDVLSVTN-SLVGNKRRWIIDSGRSQHVCTD 547
DC WK+ K + D + T +A D + L+V+ + ++R WI+D+G S H+C+
Sbjct: 243 PDCPLWKE-KDDKGSDCSMTGIAQASNDFGEFLTVSKGNYTCSQRDWILDTGSSHHLCSR 301
Query: 546 REMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLG 367
RE F T+ V+G V + G+ T V+ T++ + DG V TL DV +VPR R NL+SL
Sbjct: 302 REYFDTFQEVKGFVTW-GDGTRRCVMGVGTVKIKMFDGAVRTLGDVVYVPRFRRNLVSLS 360
Query: 366 TLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVT 238
L G + S GAM IS G V + G+++ L G T
Sbjct: 361 QLDSKGCRVSSAGGAMKISRGCMVLMKGEKCGSMFRLIGKTQT 403
>gb|PKA49510.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 365
Score = 157 bits (397), Expect = 4e-41
Identities = 103/281 (36%), Positives = 148/281 (52%), Gaps = 4/281 (1%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ F+ +I++L + K+E+E++ LLLL SLP Y I+YG K+T+KV EV L
Sbjct: 10 HMNVFSKMISQLRSINVKLEEENEALLLLSSLPKSYDHLVTTILYG-KDTLKVEEVNATL 68
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAREKNSNGGS---AGNPKFKNYICNWCHRKGHIKAD 718
L+ + + Q TGE L +S R KN G K + C +C ++GH K D
Sbjct: 69 LSNEVRNKQSTGESLTVKTSQDR-GRSKNKFGNQYRYRSISKENDNRCYYCKKEGHWKRD 127
Query: 717 CKAWKKSKSNS-KQDGATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGRSQHVCTDRE 541
C KKSK K+ G ++A E + L T S + + WI+DS S H+C R+
Sbjct: 128 CP--KKSKQQQQKKSGEEASVASRLEKDSETLC-TFSCMDSSDSWILDSDCSYHMCPFRD 184
Query: 540 MFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLGTL 361
FSTY+ GG V +GN++ CK V TI+ + DG + TL +V HVP R LISLGTL
Sbjct: 185 WFSTYSIHDGGRVIMGNNSECKSVGIGTIKIKMFDGVIRTLTEVRHVPDLRKGLISLGTL 244
Query: 360 HRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVT 238
G DG + + GA V + + ++Y L G +T
Sbjct: 245 DASGCTFIGSDGIIKVKKGAPVVMKGEKIESLYRLIGKTIT 285
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa]
Length = 1335
Score = 163 bits (412), Expect = 1e-40
Identities = 102/288 (35%), Positives = 151/288 (52%), Gaps = 15/288 (5%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
HIAEF ++ +L +E K +DED LLLLCSLP+ Y +FRD I+ ++ + + EV + L
Sbjct: 120 HIAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLS-RDELTLKEVYDAL 178
Query: 888 LNKDKI--------DSQLTGEHLQ-DGSSSGLIAREKNSN--GGSAGNPKFKNYICNWCH 742
NK+K+ S GE L G + + EKN + G S P C +C
Sbjct: 179 QNKEKMKIMVQNDGSSSSKGEALHVRGRTENKTSNEKNYDRRGRSKSKPPGNKKFCVYCK 238
Query: 741 RKGHIKADCKAWKKSKSNSKQDG--ATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGR 568
K H +CK + + +K+DG + + A+ D+DS D L V V WI+DS
Sbjct: 239 LKNHNIDECKKVQAKERKNKKDGKVSVASAAVSDDDSGDCLVVFAGCVAGHDEWILDSAC 298
Query: 567 SQHVCTDREMFSTYTSV-RGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRS 391
S H+CT R FS+Y V +G VV +G+ C +V ++Q + DG TL +V ++P
Sbjct: 299 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGM 358
Query: 390 RYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKL-VGNVYVLQG 250
NLISL TL +G++ DG + +S G+ V L +YVL+G
Sbjct: 359 SRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRG 406
>gb|PRQ41601.1| putative tripeptidyl-peptidase II [Rosa chinensis]
Length = 1371
Score = 162 bits (411), Expect = 2e-40
Identities = 104/283 (36%), Positives = 156/283 (55%), Gaps = 6/283 (2%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ F ++++L KV+ K+E+EDQ LLLL SLP Y++ I+YG K+T+K+ EV+ L
Sbjct: 314 HMNVFRGLVDQLAKVDVKIEEEDQALLLLTSLPDSYENIITTILYG-KDTLKMEEVESTL 372
Query: 888 LNKDKI----DSQLTGEHLQDGSSSGL-IAREKNSNGGSAGNPKFKNYICNWCHRKGHIK 724
LN +K DSQ++ QD + G AR + + S + K C C GHI+
Sbjct: 373 LNHEKRRKADDSQISVFVAQDQNRWGRSTARGSSGHSRSKSRGRGKGKQCYKCKEWGHIR 432
Query: 723 ADCKAWKKSKSNSKQDGATTNLAIEDEDSCDVLSVTN-SLVGNKRRWIIDSGRSQHVCTD 547
DC WK+ K + D + T +A D + L+V+ + ++R WI+D+G S H+C+
Sbjct: 433 PDCPLWKE-KDDKGSDCSMTGIAQASNDFGEFLTVSKGNYTCSQRDWILDTGSSHHLCSR 491
Query: 546 REMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRSRYNLISLG 367
RE F T+ V+G V + G+ T V+ T++ + DG V TL DV +VPR R NL+SL
Sbjct: 492 REYFDTFQEVKGFVTW-GDGTRRCVMGVGTVKIKMFDGAVRTLGDVVYVPRFRRNLVSLS 550
Query: 366 TLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMVT 238
L G + S GAM IS G V + G+++ L G T
Sbjct: 551 QLDSKGCRVSSAGGAMKISRGCMVLMKGEKCGSMFRLIGKTQT 593
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 162 bits (409), Expect = 3e-40
Identities = 102/292 (34%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+AEF ++ +L +E K +DED LLLLCSLP+ Y +FRD I+ ++ + + EV + L
Sbjct: 118 HMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLS-RDELTLKEVYDAL 176
Query: 888 LNKDKI--------DSQLTGEHLQ-DGSSSGLIAREKNSN--GGSAGNPKFKNYICNWCH 742
NK+K+ S GE L G + + EKN + G S P C +C
Sbjct: 177 QNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCK 236
Query: 741 RKGHIKADCKAWKKSKSNSKQDG--ATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGR 568
K H +CK + + +K+DG + + A D+DS D L V V WI+DS
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSAC 296
Query: 567 SQHVCTDREMFSTYTSV-RGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRS 391
S H+CT R FS+Y V +G VV +G+ C +V ++Q + DG TL +V ++P
Sbjct: 297 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGM 356
Query: 390 RYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKL-VGNVYVLQGSMVT 238
NLISL TL +G++ DG + +S G+ V L +YVL+G +T
Sbjct: 357 SRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLT 408
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 162 bits (409), Expect = 3e-40
Identities = 102/292 (34%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+AEF ++ +L +E K +DED LLLLCSLP+ Y +FRD I+ ++ + + EV + L
Sbjct: 118 HMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLS-RDELTLKEVYDAL 176
Query: 888 LNKDKI--------DSQLTGEHLQ-DGSSSGLIAREKNSN--GGSAGNPKFKNYICNWCH 742
NK+K+ S GE L G + + EKN + G S P C +C
Sbjct: 177 QNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCK 236
Query: 741 RKGHIKADCKAWKKSKSNSKQDG--ATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGR 568
K H +CK + + +K+DG + + A D+DS D L V V WI+DS
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSAC 296
Query: 567 SQHVCTDREMFSTYTSV-RGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRS 391
S H+CT R FS+Y V +G VV +G+ C +V ++Q + DG TL +V ++P
Sbjct: 297 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGM 356
Query: 390 RYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKL-VGNVYVLQGSMVT 238
NLISL TL +G++ DG + +S G+ V L +YVL+G +T
Sbjct: 357 SRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDLNSAKLYVLRGCTLT 408
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
gb|ABA92739.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1373
Score = 160 bits (406), Expect = 7e-40
Identities = 101/292 (34%), Positives = 152/292 (52%), Gaps = 15/292 (5%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+AEF ++ +L +E K +DED LLLLCSLP+ Y +FRD I+ ++ + + EV + L
Sbjct: 118 HMAEFKKIVADLVSMEVKYDDEDLGLLLLCSLPNSYANFRDTILLS-RDELTLKEVYDAL 176
Query: 888 LNKDKI--------DSQLTGEHLQ-DGSSSGLIAREKNSN--GGSAGNPKFKNYICNWCH 742
NK+K+ S GE L G + + EKN + G S P C +C
Sbjct: 177 QNKEKMKIMVQNDGSSSSKGEALHVRGRTENRTSNEKNYDRRGRSKSKPPGNKKFCVYCK 236
Query: 741 RKGHIKADCKAWKKSKSNSKQDG--ATTNLAIEDEDSCDVLSVTNSLVGNKRRWIIDSGR 568
K H +CK + + +K+DG + + A D+DS D L V V WI+DS
Sbjct: 237 LKNHNIDECKKVQAKERKNKKDGKVSVASAAASDDDSGDCLVVFAGCVAGHDEWILDSAC 296
Query: 567 SQHVCTDREMFSTYTSV-RGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTLHDVSHVPRS 391
S H+CT R FS+Y V +G VV +G+ C +V ++Q + DG TL +V ++P
Sbjct: 297 SFHICTKRNWFSSYKPVQKGDVVRMGDDNPCAIVGIGSVQIKTDDGMTRTLKNVRYIPGM 356
Query: 390 RYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKL-VGNVYVLQGSMVT 238
NLISL TL +G++ DG + +S G+ V + +YVL+G +T
Sbjct: 357 SRNLISLSTLDAEGYKYSGSDGVLKVSKGSLVCLKGDVNSAKLYVLRGCTLT 408
>gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1241
Score = 159 bits (401), Expect = 3e-39
Identities = 93/303 (30%), Positives = 161/303 (53%), Gaps = 27/303 (8%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H++ F ++ +L+ +E K ++ED L+LLCSLPS Y +FRD I+Y ++T+ + EV + L
Sbjct: 29 HLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYS-RDTLTLKEVYDAL 87
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAR----EKNSN------------GGSAGNPKFKNYI 757
K+K+ + E + + GL+ R EKN+N G S ++K+
Sbjct: 88 HAKEKMKKMVPSEG-SNSQAEGLVVRGRQQEKNTNNKSRDKSSSIYRGRSKSRGRYKS-- 144
Query: 756 CNWCHRKGHIKADCKAWK---KSK-------SNSKQDGATTNLAIEDEDSCDVLSVTNSL 607
C +C R GH ++C WK K K K++ + +++ ++L
Sbjct: 145 CKYCKRDGHDISEC--WKLQDKDKRTRKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGC 202
Query: 606 VGNKRRWIIDSGRSQHVCTDREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYV 427
+WI+D+ + H+C +R+ F+TY +V+GG V +G+ T C+V T+Q + DG +
Sbjct: 203 AQTSDQWILDTACTYHMCPNRDWFATYEAVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCI 262
Query: 426 TTLHDVSHVPRSRYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKL-VGNVYVLQG 250
TL DV H+P + +LISL TL R G++ DG + ++ G+ V + N+Y L+G
Sbjct: 263 RTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKYANLYHLRG 322
Query: 249 SMV 241
+ +
Sbjct: 323 TTI 325
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 158 bits (399), Expect = 6e-39
Identities = 93/303 (30%), Positives = 159/303 (52%), Gaps = 27/303 (8%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H++ F ++ +L+ +E K +++D L+LLCSLPS Y +FRD I+Y ++T+ + EV + L
Sbjct: 120 HLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYS-RDTLTLKEVYDAL 178
Query: 888 LNKDKIDSQLTGEHLQDGSSSGLIAR----EKNSN------------GGSAGNPKFKNYI 757
K+K+ + E + + GL+ R EKN+N G S ++K+
Sbjct: 179 HAKEKMKKMVPSEG-SNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKS-- 235
Query: 756 CNWCHRKGHIKADCKAWK---KSK-------SNSKQDGATTNLAIEDEDSCDVLSVTNSL 607
C +C R GH + C WK K K K++ + +++ ++L
Sbjct: 236 CKYCKRDGHDISKC--WKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGC 293
Query: 606 VGNKRRWIIDSGRSQHVCTDREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYV 427
+WI+D+ + H+C +R+ F+TY V+GG V +G+ T C+V T+Q + DG +
Sbjct: 294 AQTSDQWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCI 353
Query: 426 TTLHDVSHVPRSRYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKL-VGNVYVLQG 250
TL DV H+P + +LISL TL R G++ DG + ++ G+ V + N+Y LQG
Sbjct: 354 RTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQG 413
Query: 249 SMV 241
+ +
Sbjct: 414 TTI 416
>gb|OMO83367.1| Integrase, catalytic core [Corchorus capsularis]
Length = 785
Score = 157 bits (397), Expect = 7e-39
Identities = 100/299 (33%), Positives = 159/299 (53%), Gaps = 23/299 (7%)
Frame = -2
Query: 1068 HIAEFTSVINELDKVETKVEDEDQTLLLLCSLPSFYKSFRDAIIYGGKETIKVSEVKEHL 889
H+ F +I +L V K+EDED L+LL SLP +++FRD ++Y G++TI + +VK+ L
Sbjct: 97 HLDSFNRIILDLGGVRVKIEDEDLALILLFSLPRSFQNFRDTMLY-GRDTIALKDVKDAL 155
Query: 888 LNKD---KIDSQLTGEHLQDGSSSGLIAREKNSNGGSAGNPKFKN--------YICNWCH 742
L+K+ K+ + + GE +GLI + S+G +F++ C +C+
Sbjct: 156 LSKELQNKVSADVDGE-------AGLIVTRGRNKEKSSGTTRFRSRSKSRVSRLRCFYCN 208
Query: 741 RKGHIKADCKAWKKSKSNSK------------QDGATTNLAIEDEDSCDVLSVTNSLVGN 598
KGH++ DC KK S+ K Q+G++ +DE DVL+V S G+
Sbjct: 209 EKGHLRKDCPDRKKGNSSEKMESNVKAMVAIVQEGSSLVETSDDEVGTDVLTV--STTGS 266
Query: 597 KRRWIIDSGRSQHVCTDREMFSTYTSVRGGVVFIGNSTTCKVVDKETIQFRAHDGYVTTL 418
W++D+ S H+ R +F+T+ G V+ +G+ TT V ++Q + HDG + T
Sbjct: 267 ANTWVLDTSASYHMTFSRNLFTTFKEWNGSVM-LGDKTTLTVKGSGSVQIKTHDGTIRTF 325
Query: 417 HDVSHVPRSRYNLISLGTLHRDGFEIKSEDGAMLISNGARVTFATKLVGNVYVLQGSMV 241
D VP R NLISLGTL + G++ E+G + +S GA KL +Y L G+ V
Sbjct: 326 -DAWLVPELR-NLISLGTLDKQGYKYSGENGQIKVSKGAMTILKGKLQHGIYTLIGNSV 382